Literature DB >> 23144373

Genome sequence of Halorubrum sp. strain T3, an extremely halophilic archaeon harboring a virus-like element.

Shaoxing Chen1, Chuanming Wang, Zhiwei Zhao, Zhu L Yang.   

Abstract

Halorubrum sp. strain T3, harboring a virus-like element, was isolated from a sample collected from a solar saltern in Yunnan, China. Several strains of Halorubrum pleomorphic viruses were reported in this genus recently; however, the virus-host interaction in haloarchaea remains unclear. To explore this issue, here we present the genome sequence of Halorubrum sp. strain T3 (3,168,011 bp, 68.48% G+C content).

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Year:  2012        PMID： 23144373      PMCID： PMC3497484          DOI： 10.1128/JB.01528-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  20 in total

1.  Diversity of culturable halophilic archaea isolated from Rambla Salada, Murcia (Spain).

Authors:  R Luque; C M González-Domenech; I Llamas; E Quesada; V Béjar
Journal:  Extremophiles       Date:  2012-01-05       Impact factor: 2.395

2.  Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system.

Authors:  Kirill A Datsenko; Ksenia Pougach; Anton Tikhonov; Barry L Wanner; Konstantin Severinov; Ekaterina Semenova
Journal:  Nat Commun       Date:  2012-07-10       Impact factor: 14.919

3.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

4.  Prophinder: a computational tool for prophage prediction in prokaryotic genomes.

Authors:  Gipsi Lima-Mendez; Jacques Van Helden; Ariane Toussaint; Raphaël Leplae
Journal:  Bioinformatics       Date:  2008-01-30       Impact factor: 6.937

5.  Halorubrum chaoviator sp. nov., a haloarchaeon isolated from sea salt in Baja California, Mexico, Western Australia and Naxos, Greece.

Authors:  Rocco L Mancinelli; Ragnhild Landheim; Cristina Sánchez-Porro; Marion Dornmayr-Pfaffenhuemer; Claudia Gruber; Andrea Legat; Antonio Ventosa; Christian Radax; Kunio Ihara; Melisa R White; Helga Stan-Lotter
Journal:  Int J Syst Evol Microbiol       Date:  2009-06-30       Impact factor: 2.747

6.  Lateral gene transfer occurring in haloarchaea: an interpretative imitation study.

Authors:  Shaoxing Chen; Rodham E Tulloss; Yanhong Liu; Bang Feng; Zhiwei Zhao; Zhu L Yang
Journal:  World J Microbiol Biotechnol       Date:  2012-07-04       Impact factor: 3.312

7.  An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope.

Authors:  Maija K Pietilä; Elina Roine; Lars Paulin; Nisse Kalkkinen; Dennis H Bamford
Journal:  Mol Microbiol       Date:  2009-03-04       Impact factor: 3.501

8.  SOAP: short oligonucleotide alignment program.

Authors:  Ruiqiang Li; Yingrui Li; Karsten Kristiansen; Jun Wang
Journal:  Bioinformatics       Date:  2008-01-28       Impact factor: 6.937

9.  Related haloarchaeal pleomorphic viruses contain different genome types.

Authors:  Ana Sencilo; Lars Paulin; Stefanie Kellner; Mark Helm; Elina Roine
Journal:  Nucleic Acids Res       Date:  2012-03-06       Impact factor: 16.971

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
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  2 in total

1.  Molecular characterization of pHRDV1, a new virus-like mobile genetic element closely related to pleomorphic viruses in haloarchaea.

Authors:  Shaoxing Chen; Chuanming Wang; Jian-Ping Xu; Zhu L Yang
Journal:  Extremophiles       Date:  2013-12-29       Impact factor: 2.395

Review 2.  Viruses of haloarchaea.

Authors:  Alison W S Luk; Timothy J Williams; Susanne Erdmann; R Thane Papke; Ricardo Cavicchioli
Journal:  Life (Basel)       Date:  2014-11-13
  2 in total

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