Literature DB >> 23143244

Crystallization and preliminary crystallographic analysis of 2-aminophenol 1,6-dioxygenase complexed with substrate and with an inhibitor.

De-Feng Li1, Jia-Yue Zhang, Yanjie Hou, Lei Liu, Shuang-Jiang Liu, Wei Liu.   

Abstract

Dioxygen activation implemented by nonhaem Fe(II) enzymes containing the 2-His-1-carboxylate facial triad has been extensively studied in recent years. Extradiol dioxygenase is the archetypal member of this superfamily and catalyzes the oxygenolytic ring opening of catechol analogues. Here, the crystallization and preliminary X-ray analysis of 2-aminophenol 1,6-dioxygenase, an enzyme representing a minor subset of extradiol dioxygenases that catalyze the fission of 2-aminophenol rather than catecholic compounds, is reported. Crystals of the holoenzyme with FeII and of complexes with the substrate 2-aminophenol and the suicide inhibitor 4-nitrocatechol were grown using the cocrystallization method under the same conditions as used for the crystallization of the apoenzyme. The crystals belonged to space group C2 and diffracted to 2.3-2.7 Å resolution; the crystal that diffracted to the highest resolution had unit-cell parameters a=270.24, b=48.39, c=108.55 Å, β=109.57°. All X-ray data sets collected from diffraction-quality crystals were suitable for structure determination.

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Year:  2012        PMID: 23143244      PMCID: PMC3515376          DOI: 10.1107/S1744309112038705

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  20 in total

1.  Molecular cloning of the protocatechuate 4,5-dioxygenase genes of Pseudomonas paucimobilis.

Authors:  Y Noda; S Nishikawa; K Shiozuka; H Kadokura; H Nakajima; K Yoda; Y Katayama; N Morohoshi; T Haraguchi; M Yamasaki
Journal:  J Bacteriol       Date:  1990-05       Impact factor: 3.490

2.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

3.  Novel genes encoding 2-aminophenol 1,6-dioxygenase from Pseudomonas species AP-3 growing on 2-aminophenol and catalytic properties of the purified enzyme.

Authors:  S Takenaka; S Murakami; R Shinke; K Hatakeyama; H Yukawa; K Aoki
Journal:  J Biol Chem       Date:  1997-06-06       Impact factor: 5.157

4.  Genetic and biochemical comparison of 2-aminophenol 1,6-dioxygenase of Pseudomonas pseudoalcaligenes JS45 to meta-cleavage dioxygenases: divergent evolution of 2-aminophenol meta-cleavage pathway.

Authors:  J K Davis; Z He; C C Somerville; J C Spain
Journal:  Arch Microbiol       Date:  1999-11       Impact factor: 2.552

Review 5.  The 2-His-1-carboxylate facial triad: a versatile platform for dioxygen activation by mononuclear non-heme iron(II) enzymes.

Authors:  Kevin D Koehntop; Joseph P Emerson; Lawrence Que
Journal:  J Biol Inorg Chem       Date:  2005-03-01       Impact factor: 3.358

6.  A novel 2-aminophenol 1,6-dioxygenase involved in the degradation of p-chloronitrobenzene by Comamonas strain CNB-1: purification, properties, genetic cloning and expression in Escherichia coli.

Authors:  Jian-Feng Wu; Cui-Wei Sun; Cheng-Ying Jiang; Zhi-Pei Liu; Shuang-Jiang Liu
Journal:  Arch Microbiol       Date:  2004-12-03       Impact factor: 2.552

7.  Crystal structure of an aromatic ring opening dioxygenase LigAB, a protocatechuate 4,5-dioxygenase, under aerobic conditions.

Authors:  K Sugimoto; T Senda; H Aoshima; E Masai; M Fukuda; Y Mitsui
Journal:  Structure       Date:  1999-08-15       Impact factor: 5.006

8.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

9.  X-ray absorption spectroscopic studies of the Fe(II) active site of catechol 2,3-dioxygenase. Implications for the extradiol cleavage mechanism.

Authors:  L Shu; Y M Chiou; A M Orville; M A Miller; J D Lipscomb; L Que
Journal:  Biochemistry       Date:  1995-05-23       Impact factor: 3.162

10.  Crystal structures of the reaction intermediate and its homologue of an extradiol-cleaving catecholic dioxygenase.

Authors:  Nobuyuki Sato; Yoshitaka Uragami; Tomoko Nishizaki; Yoshito Takahashi; Gen Sazaki; Keisuke Sugimoto; Takamasa Nonaka; Eiji Masai; Masao Fukuda; Toshiya Senda
Journal:  J Mol Biol       Date:  2002-08-23       Impact factor: 5.469

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