Literature DB >> 23141721

New insights into small RNA-dependent translational regulation in prokaryotes.

Guillaume Desnoyers1, Marie-Pier Bouchard, Eric Massé.   

Abstract

Bacterial small RNAs (sRNAs) typically repress translation of target mRNAs by pairing directly to the ribosome-binding site (RBS) and competing with initiating ribosomes, an event that is often followed by rapid mRNA decay. In recent years, however, many examples of translation-repressing sRNAs pairing outside the RBS have been described. In this review, we focus on newly characterized mechanisms that explain how a sRNA can modulate translation by binding outside of the RBS and discuss new insights into the events following translation repression. These new mechanisms broaden current perspectives of sRNA pairing sites on mRNA targets and demonstrate how the interplay between sRNAs, mRNA structures, and protein partners can contribute to post-transcriptional regulation.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 23141721     DOI: 10.1016/j.tig.2012.10.004

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  46 in total

Review 1.  New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing.

Authors:  Alexander Maxwell Burroughs; Yoshinari Ando; L Aravind
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-12-05       Impact factor: 9.957

2.  Small RNA Transcriptome of the Oral Microbiome during Periodontitis Progression.

Authors:  Ana E Duran-Pinedo; Susan Yost; Jorge Frias-Lopez
Journal:  Appl Environ Microbiol       Date:  2015-07-17       Impact factor: 4.792

3.  A game of tag: MAPS catches up on RNA interactomes.

Authors:  Marie-Claude Carrier; David Lalaouna; Eric Massé
Journal:  RNA Biol       Date:  2016-03-11       Impact factor: 4.652

4.  APERO: a genome-wide approach for identifying bacterial small RNAs from RNA-Seq data.

Authors:  Simon Leonard; Sam Meyer; Stephan Lacour; William Nasser; Florence Hommais; Sylvie Reverchon
Journal:  Nucleic Acids Res       Date:  2019-09-05       Impact factor: 16.971

Review 5.  Enzymes Involved in Posttranscriptional RNA Metabolism in Gram-Negative Bacteria.

Authors:  Bijoy K Mohanty; Sidney R Kushner
Journal:  Microbiol Spectr       Date:  2018-04

Review 6.  Messenger RNA degradation in bacterial cells.

Authors:  Monica P Hui; Patricia L Foley; Joel G Belasco
Journal:  Annu Rev Genet       Date:  2014-10-01       Impact factor: 16.830

7.  Transcriptional analysis of Deinococcus radiodurans reveals novel small RNAs that are differentially expressed under ionizing radiation.

Authors:  Chen-Hsun Tsai; Rick Liao; Brendan Chou; Lydia M Contreras
Journal:  Appl Environ Microbiol       Date:  2014-12-29       Impact factor: 4.792

8.  The Small RNA PinT Contributes to PhoP-Mediated Regulation of the Salmonella Pathogenicity Island 1 Type III Secretion System in Salmonella enterica Serovar Typhimurium.

Authors:  Kyungsub Kim; Alexander D Palmer; Carin K Vanderpool; James M Slauch
Journal:  J Bacteriol       Date:  2019-09-06       Impact factor: 3.490

9.  Small and Low but Potent: the Complex Regulatory Role of the Small RNA SolB in Solventogenesis in Clostridium acetobutylicum.

Authors:  Alexander J Jones; Alan G Fast; Michael Clupper; Eleftherios T Papoutsakis
Journal:  Appl Environ Microbiol       Date:  2018-07-02       Impact factor: 4.792

10.  The bacterial endoribonuclease RNase E can cleave RNA in the absence of the RNA chaperone Hfq.

Authors:  Yu Mi Baek; Kyoung-Jin Jang; Hyobeen Lee; Soojin Yoon; Ahruem Baek; Kangseok Lee; Dong-Eun Kim
Journal:  J Biol Chem       Date:  2019-09-20       Impact factor: 5.157

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