Literature DB >> 23139362

Automated image analysis of skeletal muscle fiber cross-sectional area.

Jyothi Mula1, Jonah D Lee, Fujun Liu, Lin Yang, Charlotte A Peterson.   

Abstract

Morphological characteristics of muscle fibers, such as fiber size, are critical factors that determine the health and function of the muscle. However, at this time, quantification of muscle fiber cross-sectional area is still a manual or, at best, a semiautomated process. This process is labor intensive, time consuming, and prone to errors, leading to high interobserver variability. We have developed and validated an automatic image segmentation algorithm and compared it directly with commercially available semiautomatic software currently considered state of the art. The proposed automatic segmentation algorithm was evaluated against a semiautomatic method with manual annotation using 35 randomly selected cross-sectional muscle histochemical images. The proposed algorithm begins with ridge detection to enhance the muscle fiber boundaries, followed by robust seed detection based on concave area identification to find initial seeds for muscle fibers. The final muscle fiber boundaries are automatically delineated using a gradient vector flow deformable model. Our automatic approach is accurate and represents a significant advancement in efficiency; quantification of fiber area in muscle cross sections was reduced from 25-40 min/image to 15 s/image, while accommodating common quantification obstacles including morphological variation (e.g., heterogeneity in fiber size and fibrosis) and technical artifacts (e.g., processing defects and poor staining quality). Automatic quantification of muscle fiber cross-sectional area using the proposed method is a powerful tool that will increase sensitivity, objectivity, and efficiency in measuring muscle adaptation.

Entities:  

Mesh:

Year:  2012        PMID: 23139362      PMCID: PMC3544517          DOI: 10.1152/japplphysiol.01022.2012

Source DB:  PubMed          Journal:  J Appl Physiol (1985)        ISSN: 0161-7567


  11 in total

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4.  Common tasks in microscopic and ultrastructural image analysis using ImageJ.

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5.  Sca-1-expressing nonmyogenic cells contribute to fibrosis in aged skeletal muscle.

Authors:  Mats Hidestrand; Sonia Richards-Malcolm; Catherine M Gurley; Greg Nolen; Barry Grimes; Amanda Waterstrat; Gary Van Zant; Charlotte A Peterson
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2008-06       Impact factor: 6.053

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Authors:  John J McCarthy; Jyothi Mula; Mitsunori Miyazaki; Rod Erfani; Kelcye Garrison; Amreen B Farooqui; Ratchakrit Srikuea; Benjamin A Lawson; Barry Grimes; Charles Keller; Gary Van Zant; Kenneth S Campbell; Karyn A Esser; Esther E Dupont-Versteegden; Charlotte A Peterson
Journal:  Development       Date:  2011-09       Impact factor: 6.868

9.  Neural factors versus hypertrophy in the time course of muscle strength gain.

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Authors:  Sarah M Senf; Stephen L Dodd; Andrew R Judge
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  23 in total

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2.  Aged Muscle Demonstrates Fiber-Type Adaptations in Response to Mechanical Overload, in the Absence of Myofiber Hypertrophy, Independent of Satellite Cell Abundance.

Authors:  Jonah D Lee; Christopher S Fry; Jyothi Mula; Tyler J Kirby; Janna R Jackson; Fujun Liu; Lin Yang; Esther E Dupont-Versteegden; John J McCarthy; Charlotte A Peterson
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2015-04-15       Impact factor: 6.053

3.  Automated fiber-type-specific cross-sectional area assessment and myonuclei counting in skeletal muscle.

Authors:  Fujun Liu; Christopher S Fry; Jyothi Mula; Janna R Jackson; Jonah D Lee; Charlotte A Peterson; Lin Yang
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4.  SMASH - semi-automatic muscle analysis using segmentation of histology: a MATLAB application.

Authors:  Lucas R Smith; Elisabeth R Barton
Journal:  Skelet Muscle       Date:  2014-11-27       Impact factor: 4.912

5.  Automated high-content morphological analysis of muscle fiber histology.

Authors:  Mauro Miazaki; Matheus P Viana; Zhong Yang; Cesar H Comin; Yaming Wang; Luciano da F Costa; Xiaoyin Xu
Journal:  Comput Biol Med       Date:  2015-04-23       Impact factor: 4.589

6.  AIIMDs: An Integrated Framework of Automatic Idiopathic Inflammatory Myopathy Diagnosis for Muscle.

Authors:  Manish Sapkota; Fujun Liu; Yuanpu Xie; Hai Su; Fuyong Xing; Lin Yang
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Review 7.  Computer-aided diagnosis in rheumatic diseases using ultrasound: an overview.

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Journal:  Clin Rheumatol       Date:  2019-11-06       Impact factor: 2.980

8.  MyoVision: software for automated high-content analysis of skeletal muscle immunohistochemistry.

Authors:  Yuan Wen; Kevin A Murach; Ivan J Vechetti; Christopher S Fry; Chase Vickery; Charlotte A Peterson; John J McCarthy; Kenneth S Campbell
Journal:  J Appl Physiol (1985)       Date:  2017-10-05

9.  A neural network approach to analyze cross-sections of muscle fibers in pathological images.

Authors:  Ye Li; Zhong Yang; Yaming Wang; Xinhua Cao; Xiaoyin Xu
Journal:  Comput Biol Med       Date:  2018-11-12       Impact factor: 4.589

10.  Pioglitazone treatment reduces adipose tissue inflammation through reduction of mast cell and macrophage number and by improving vascularity.

Authors:  Michael Spencer; Lin Yang; Akosua Adu; Brian S Finlin; Beibei Zhu; Lindsey R Shipp; Neda Rasouli; Charlotte A Peterson; Philip A Kern
Journal:  PLoS One       Date:  2014-07-10       Impact factor: 3.240

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