Literature DB >> 23138305

Genome sequencing in clinical microbiology.

Jacqueline Z-M Chan, Mark J Pallen, Beryl Oppenheim, Chrystala Constantinidou.   

Abstract

Mesh：

Year:  2012        PMID： 23138305     DOI： 10.1038/nbt.2410

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  43 in total

Review 1.  High-throughput sequencing and clinical microbiology: progress, opportunities and challenges.

Authors:  Mark J Pallen; Nicholas J Loman; Charles W Penn
Journal:  Curr Opin Microbiol       Date:  2010-09-16       Impact factor: 7.934

2.  High-throughput whole-genome sequencing to dissect the epidemiology of Acinetobacter baumannii isolates from a hospital outbreak.

Authors:  T Lewis; N J Loman; L Bingle; P Jumaa; G M Weinstock; D Mortiboy; M J Pallen
Journal:  J Hosp Infect       Date:  2010-03-17       Impact factor: 3.926

3.  Whole-genome sequencing and social-network analysis of a tuberculosis outbreak.

Authors:  Jennifer L Gardy; James C Johnston; Shannan J Ho Sui; Victoria J Cook; Lena Shah; Elizabeth Brodkin; Shirley Rempel; Richard Moore; Yongjun Zhao; Robert Holt; Richard Varhol; Inanc Birol; Marcus Lem; Meenu K Sharma; Kevin Elwood; Steven J M Jones; Fiona S L Brinkman; Robert C Brunham; Patrick Tang
Journal:  N Engl J Med       Date:  2011-02-24       Impact factor: 91.245

4.  Human skin wounds: a major and snowballing threat to public health and the economy.

Authors:  Chandan K Sen; Gayle M Gordillo; Sashwati Roy; Robert Kirsner; Lynn Lambert; Thomas K Hunt; Finn Gottrup; Geoffrey C Gurtner; Michael T Longaker
Journal:  Wound Repair Regen       Date:  2009 Nov-Dec       Impact factor: 3.617

5.  A metagenomic analysis of pandemic influenza A (2009 H1N1) infection in patients from North America.

Authors:  Alexander L Greninger; Eunice C Chen; Taylor Sittler; Alex Scheinerman; Nareg Roubinian; Guixia Yu; Edward Kim; Dylan R Pillai; Cyril Guyard; Tony Mazzulli; Pavel Isa; Carlos F Arias; John Hackett; Gerald Schochetman; Steve Miller; Patrick Tang; Charles Y Chiu
Journal:  PLoS One       Date:  2010-10-18       Impact factor: 3.240

6.  Genome sequencing of linezolid-resistant Streptococcus pneumoniae mutants reveals novel mechanisms of resistance.

Authors:  Jie Feng; Andréanne Lupien; Hélène Gingras; Jessica Wasserscheid; Ken Dewar; Danielle Légaré; Marc Ouellette
Journal:  Genome Res       Date:  2009-04-06       Impact factor: 9.043

Review 7.  Studying bacterial infections through culture-independent approaches.

Authors:  Geraint B Rogers; Mary P Carroll; Kenneth D Bruce
Journal:  J Med Microbiol       Date:  2009-06-25       Impact factor: 2.472

8.  Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak.

Authors:  Rene S Hendriksen; Lance B Price; James M Schupp; John D Gillece; Rolf S Kaas; David M Engelthaler; Valeria Bortolaia; Talima Pearson; Andrew E Waters; Bishnu Prasad Upadhyay; Sirjana Devi Shrestha; Shailaja Adhikari; Geeta Shakya; Paul S Keim; Frank M Aarestrup
Journal:  mBio       Date:  2011-09-01       Impact factor: 7.867

9.  Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with Methicillin-resistant S. aureus hospital-acquired infection in the United States.

Authors:  Veronica N Kos; Christopher A Desjardins; Allison Griggs; Gustavo Cerqueira; Andries Van Tonder; Matthew T G Holden; Paul Godfrey; Kelli L Palmer; Kip Bodi; Emmanuel F Mongodin; Jennifer Wortman; Michael Feldgarden; Trevor Lawley; Steven R Gill; Brian J Haas; Bruce Birren; Michael S Gilmore
Journal:  mBio       Date:  2012-05-22       Impact factor: 7.867

Review 10.  What does the future hold for clinical microbiology?

Authors:  Didier Raoult; Pierre Edouard Fournier; Michel Drancourt
Journal:  Nat Rev Microbiol       Date:  2004-02       Impact factor: 60.633
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  20 in total

Review 1.  Performance and Application of 16S rRNA Gene Cycle Sequencing for Routine Identification of Bacteria in the Clinical Microbiology Laboratory.

Authors:  Deirdre L Church; Lorenzo Cerutti; Antoine Gürtler; Thomas Griener; Adrian Zelazny; Stefan Emler
Journal:  Clin Microbiol Rev       Date:  2020-09-09       Impact factor: 26.132

Review 2.  Diagnosis of Clostridium difficile infection: an ongoing conundrum for clinicians and for clinical laboratories.

Authors:  Carey-Ann D Burnham; Karen C Carroll
Journal:  Clin Microbiol Rev       Date:  2013-07       Impact factor: 26.132

3.  Enabling large-scale next-generation sequence assembly with Blacklight.

Authors:  M Brian Couger; Lenore Pipes; Fabio Squina; Rolf Prade; Adam Siepel; Robert Palermo; Michael G Katze; Christopher E Mason; Philip D Blood
Journal:  Concurr Comput       Date:  2014-09-10       Impact factor: 1.536

Review 4.  Recent advances in understanding enteric pathogenic Escherichia coli.

Authors:  Matthew A Croxen; Robyn J Law; Roland Scholz; Kristie M Keeney; Marta Wlodarska; B Brett Finlay
Journal:  Clin Microbiol Rev       Date:  2013-10       Impact factor: 26.132

Review 5.  Viral surveillance and discovery.

Authors:  Walter Ian Lipkin; Cadhla Firth
Journal:  Curr Opin Virol       Date:  2013-04-17       Impact factor: 7.090

Review 6.  A Molecular Window into the Biology and Epidemiology of Pneumocystis spp.

Authors:  Liang Ma; Ousmane H Cissé; Joseph A Kovacs
Journal:  Clin Microbiol Rev       Date:  2018-06-13       Impact factor: 26.132

7.  TreeSeq, a Fast and Intuitive Tool for Analysis of Whole Genome and Metagenomic Sequence Data.

Authors:  Bastiaan Wintermans; Bernd Brandt; Christina Vandenbroucke-Grauls; Andries Budding
Journal:  PLoS One       Date:  2015-05-01       Impact factor: 3.240

8.  Software for selecting the most informative sets of genomic loci for multi-target microbial typing.

Authors:  Matthew V N O'Sullivan; Vitali Sintchenko; Gwendolyn L Gilbert
Journal:  BMC Bioinformatics       Date:  2013-05-01       Impact factor: 3.169

Review 9.  Genomics and outbreak investigation: from sequence to consequence.

Authors:  Esther R Robinson; Timothy M Walker; Mark J Pallen
Journal:  Genome Med       Date:  2013-04-29       Impact factor: 11.117

10.  A modified RNA-Seq approach for whole genome sequencing of RNA viruses from faecal and blood samples.

Authors:  Elizabeth M Batty; T H Nicholas Wong; Amy Trebes; Karène Argoud; Moustafa Attar; David Buck; Camilla L C Ip; Tanya Golubchik; Madeleine Cule; Rory Bowden; Charis Manganis; Paul Klenerman; Eleanor Barnes; A Sarah Walker; David H Wyllie; Daniel J Wilson; Kate E Dingle; Tim E A Peto; Derrick W Crook; Paolo Piazza
Journal:  PLoS One       Date:  2013-06-10       Impact factor: 3.240
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