Literature DB >> 23132856

Structural enzymology of Cellvibrio japonicus Agd31B protein reveals α-transglucosylase activity in glycoside hydrolase family 31.

Johan Larsbrink1, Atsushi Izumi, Glyn R Hemsworth, Gideon J Davies, Harry Brumer.   

Abstract

The metabolism of the storage polysaccharides glycogen and starch is of vital importance to organisms from all domains of life. In bacteria, utilization of these α-glucans requires the concerted action of a variety of enzymes, including glycoside hydrolases, glycoside phosphorylases, and transglycosylases. In particular, transglycosylases from glycoside hydrolase family 13 (GH13) and GH77 play well established roles in α-glucan side chain (de)branching, regulation of oligo- and polysaccharide chain length, and formation of cyclic dextrans. Here, we present the biochemical and tertiary structural characterization of a new type of bacterial 1,4-α-glucan 4-α-glucosyltransferase from GH31. Distinct from 1,4-α-glucan 6-α-glucosyltransferases (EC 2.4.1.24) and 4-α-glucanotransferases (EC 2.4.1.25), this enzyme strictly transferred one glucosyl residue from α(1→4)-glucans in disproportionation reactions. Substrate hydrolysis was undetectable for a series of malto-oligosaccharides except maltose for which transglycosylation nonetheless dominated across a range of substrate concentrations. Crystallographic analysis of the enzyme in free, acarbose-complexed, and trapped 5-fluoro-β-glucosyl-enzyme intermediate forms revealed extended substrate interactions across one negative and up to three positive subsites, thus providing structural rationalization for the unique, single monosaccharide transferase activity of the enzyme.

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Year:  2012        PMID: 23132856      PMCID: PMC3527916          DOI: 10.1074/jbc.M112.416511

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  55 in total

Review 1.  The functions of 4-alpha-glucanotransferases and their use for the production of cyclic glucans.

Authors:  T Takaha; S M Smith
Journal:  Biotechnol Genet Eng Rev       Date:  1999

2.  Integration of macromolecular diffraction data.

Authors:  A G Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-10

3.  Novel alpha-glucosidase from Aspergillus nidulans with strong transglycosylation activity.

Authors:  Naoki Kato; Sachie Suyama; Masao Shirokane; Masashi Kato; Tetsuo Kobayashi; Norihiro Tsukagoshi
Journal:  Appl Environ Microbiol       Date:  2002-03       Impact factor: 4.792

4.  Bacteroides thetaiotaomicron VPI-5482 glycoside hydrolase family 66 homolog catalyzes dextranolytic and cyclization reactions.

Authors:  Young-Min Kim; Eiji Yamamoto; Min-Sun Kang; Hiroyuki Nakai; Wataru Saburi; Masayuki Okuyama; Haruhide Mori; Kazumi Funane; Mitsuru Momma; Zui Fujimoto; Mikihiko Kobayashi; Doman Kim; Atsuo Kimura
Journal:  FEBS J       Date:  2012-08-02       Impact factor: 5.542

5.  The crystal structure of Thermotoga maritima maltosyltransferase and its implications for the molecular basis of the novel transfer specificity.

Authors:  A Roujeinikova; C Raasch; J Burke; P J Baker; W Liebl; D W Rice
Journal:  J Mol Biol       Date:  2001-09-07       Impact factor: 5.469

6.  Reclassification of 'Pseudomonas fluorescens subsp. cellulosa' NCIMB 10462 (Ueda et al. 1952) as Cellvibrio japonicus sp. nov. and revival of Cellvibrio vulgaris sp. nov., nom. rev. and Cellvibrio fulvus sp. nov., nom. rev.

Authors:  David R Humphry; Gary W Black; Stephen P Cummings
Journal:  Int J Syst Evol Microbiol       Date:  2003-03       Impact factor: 2.747

7.  Identification of the catalytic nucleophile of the Family 31 alpha-glucosidase from Aspergillus niger via trapping of a 5-fluoroglycosyl-enzyme intermediate.

Authors:  S S Lee; S He; S G Withers
Journal:  Biochem J       Date:  2001-10-15       Impact factor: 3.857

8.  Detailed dissection of a new mechanism for glycoside cleavage: alpha-1,4-glucan lyase.

Authors:  Seung Seo Lee; Shukun Yu; Stephen G Withers
Journal:  Biochemistry       Date:  2003-11-11       Impact factor: 3.162

9.  A synergistic reaction mechanism of a cycloalternan-forming enzyme and a D-glucosyltransferase for the production of cycloalternan in Bacillus sp. NRRL B-21195.

Authors:  Yeon-Kye Kim; Motomitsu Kitaoka; Kiyoshi Hayashi; Cheorl-Ho Kim; Gregory L Côté
Journal:  Carbohydr Res       Date:  2003-10-10       Impact factor: 2.104

10.  Crystal structure of Thermotoga maritima 4-alpha-glucanotransferase and its acarbose complex: implications for substrate specificity and catalysis.

Authors:  Anna Roujeinikova; Carsten Raasch; Svetlana Sedelnikova; Wolfgang Liebl; David W Rice
Journal:  J Mol Biol       Date:  2002-08-02       Impact factor: 5.469

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  18 in total

1.  Division of labor in honey bee gut microbiota for plant polysaccharide digestion.

Authors:  Hao Zheng; Julie Perreau; J Elijah Powell; Benfeng Han; Zijing Zhang; Waldan K Kwong; Susannah G Tringe; Nancy A Moran
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-27       Impact factor: 11.205

2.  Structure-function analysis of silkworm sucrose hydrolase uncovers the mechanism of substrate specificity in GH13 subfamily 17 exo-α-glucosidases.

Authors:  Takatsugu Miyazaki; Enoch Y Park
Journal:  J Biol Chem       Date:  2020-05-07       Impact factor: 5.157

3.  Development of a strategy for the screening of α-glucosidase-producing microorganisms.

Authors:  Bo Zhou; Nan Huang; Wei Zeng; Hao Zhang; Guiguang Chen; Zhiqun Liang
Journal:  J Microbiol       Date:  2020-01-29       Impact factor: 3.422

4.  Crystal structure of α-1,4-glucan lyase, a unique glycoside hydrolase family member with a novel catalytic mechanism.

Authors:  Henriëtte J Rozeboom; Shukun Yu; Susan Madrid; Kor H Kalk; Ran Zhang; Bauke W Dijkstra
Journal:  J Biol Chem       Date:  2013-07-31       Impact factor: 5.157

Review 5.  α-Glucosidases and α-1,4-glucan lyases: structures, functions, and physiological actions.

Authors:  Masayuki Okuyama; Wataru Saburi; Haruhide Mori; Atsuo Kimura
Journal:  Cell Mol Life Sci       Date:  2016-04-30       Impact factor: 9.261

Review 6.  Polysaccharide degradation systems of the saprophytic bacterium Cellvibrio japonicus.

Authors:  Jeffrey G Gardner
Journal:  World J Microbiol Biotechnol       Date:  2016-06-04       Impact factor: 3.312

7.  Structural basis of the strict specificity of a bacterial GH31 α-1,3-glucosidase for nigerooligosaccharides.

Authors:  Marina Ikegaya; Toshio Moriya; Naruhiko Adachi; Masato Kawasaki; Enoch Y Park; Takatsugu Miyazaki
Journal:  J Biol Chem       Date:  2022-03-12       Impact factor: 5.486

8.  Structural insight into how Streptomyces coelicolor maltosyl transferase GlgE binds α-maltose 1-phosphate and forms a maltosyl-enzyme intermediate.

Authors:  Karl Syson; Clare E M Stevenson; Abdul M Rashid; Gerhard Saalbach; Minhong Tang; Anne Tuukkanen; Dmitri I Svergun; Stephen G Withers; David M Lawson; Stephen Bornemann
Journal:  Biochemistry       Date:  2014-04-11       Impact factor: 3.162

9.  An Aspergillus nidulans β-mannanase with high transglycosylation capacity revealed through comparative studies within glycosidase family 5.

Authors:  Anna Rosengren; Sumitha K Reddy; Johan Svantesson Sjöberg; Oskar Aurelius; Derek T Logan; Katarína Kolenová; Henrik Stålbrand
Journal:  Appl Microbiol Biotechnol       Date:  2014-06-21       Impact factor: 4.813

10.  Stereoselective synthesis of a 4-⍺-glucoside of valienamine and its X-ray structure in complex with Streptomyces coelicolor GlgE1-V279S.

Authors:  Anshupriya Si; Thilina D Jayasinghe; Radhika Thanvi; Donald R Ronning; Steven J Sucheck
Journal:  Sci Rep       Date:  2021-06-28       Impact factor: 4.379

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