Literature DB >> 23130696

rfishbase: exploring, manipulating and visualizing FishBase data from R.

C Boettiger1, D T Lang, P C Wainwright.   

Abstract

This article introduces a package that provides interactive and programmatic access to the FishBase repository. This package allows interaction with data on over 30 000 fish species in the rich statistical computing environment, R. This direct, scriptable interface to FishBase data enables better discovery and integration essential for large-scale comparative analyses. This article provides several examples to illustrate how the package works, and how it can be integrated into phylogenetics packages such as ape and geiger.
© 2012 The Authors. Journal of Fish Biology © 2012 The Fisheries Society of the British Isles.

Mesh:

Year:  2012        PMID: 23130696     DOI: 10.1111/j.1095-8649.2012.03464.x

Source DB:  PubMed          Journal:  J Fish Biol        ISSN: 0022-1112            Impact factor:   2.051


  25 in total

1.  Climate drives the geography of marine consumption by changing predator communities.

Authors:  Matthew A Whalen; Ross D B Whippo; John J Stachowicz; Paul H York; Erin Aiello; Teresa Alcoverro; Andrew H Altieri; Lisandro Benedetti-Cecchi; Camilla Bertolini; Midoli Bresch; Fabio Bulleri; Paul E Carnell; Stéphanie Cimon; Rod M Connolly; Mathieu Cusson; Meredith S Diskin; Elrika D'Souza; Augusto A V Flores; F Joel Fodrie; Aaron W E Galloway; Leo C Gaskins; Olivia J Graham; Torrance C Hanley; Christopher J Henderson; Clara M Hereu; Margot Hessing-Lewis; Kevin A Hovel; Brent B Hughes; A Randall Hughes; Kristin M Hultgren; Holger Jänes; Dean S Janiak; Lane N Johnston; Pablo Jorgensen; Brendan P Kelaher; Claudia Kruschel; Brendan S Lanham; Kun-Seop Lee; Jonathan S Lefcheck; Enrique Lozano-Álvarez; Peter I Macreadie; Zachary L Monteith; Nessa E O'Connor; Andrew D Olds; Jennifer K O'Leary; Christopher J Patrick; Oscar Pino; Alistair G B Poore; Michael A Rasheed; Wendel W Raymond; Katrin Reiss; O Kennedy Rhoades; Max T Robinson; Paige G Ross; Francesca Rossi; Thomas A Schlacher; Janina Seemann; Brian R Silliman; Delbert L Smee; Martin Thiel; Richard K F Unsworth; Brigitta I van Tussenbroek; Adriana Vergés; Mallarie E Yeager; Bree K Yednock; Shelby L Ziegler; J Emmett Duffy
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-26       Impact factor: 11.205

2.  The Effects of Ecological Traits on the Rate of Molecular Evolution in Ray-Finned Fishes: A Multivariable Approach.

Authors:  Jacqueline A May; Zeny Feng; Matthew G Orton; Sarah J Adamowicz
Journal:  J Mol Evol       Date:  2020-10-03       Impact factor: 2.395

3.  Migratory lineages rapidly evolve larger body sizes than non-migratory relatives in ray-finned fishes.

Authors:  Michael D Burns; Devin D Bloom
Journal:  Proc Biol Sci       Date:  2020-01-15       Impact factor: 5.349

4.  Can size distributions of European lake fish communities be predicted by trophic positions of their fish species?

Authors:  Renee M van Dorst; Christine Argillier; Sandra Brucet; Kerstin Holmgren; Pietro Volta; Ian J Winfield; Thomas Mehner
Journal:  Ecol Evol       Date:  2022-07-11       Impact factor: 3.167

5.  Sharks are the preferred scraping surface for large pelagic fishes: Possible implications for parasite removal and fitness in a changing ocean.

Authors:  Christopher D H Thompson; Jessica J Meeuwig
Journal:  PLoS One       Date:  2022-10-19       Impact factor: 3.752

6.  A phylogenomic framework for pelagiarian fishes (Acanthomorpha: Percomorpha) highlights mosaic radiation in the open ocean.

Authors:  Matt Friedman; Kara L Feilich; Hermione T Beckett; Michael E Alfaro; Brant C Faircloth; David Černý; Masaki Miya; Thomas J Near; Richard C Harrington
Journal:  Proc Biol Sci       Date:  2019-09-11       Impact factor: 5.349

7.  Linking dimensions of data on global marine animal diversity.

Authors:  Thomas J Webb; Bart Vanhoorne
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-11-02       Impact factor: 6.237

8.  Co-extinction in a host-parasite network: identifying key hosts for network stability.

Authors:  Tad Dallas; Emily Cornelius
Journal:  Sci Rep       Date:  2015-08-17       Impact factor: 4.379

9.  A preliminary inventory of the catfishes of the lower Rio Nhamundá, Brazil (Ostariophysi, Siluriformes).

Authors:  Rupert A Collins; Emanuell Duarte Ribeiro; Valéria Nogueira Machado; Tomas Hrbek; Izeni Pires Farias
Journal:  Biodivers Data J       Date:  2015-04-29

10.  Evolutionary origin of the Scombridae (tunas and mackerels): members of a paleogene adaptive radiation with 14 other pelagic fish families.

Authors:  Masaki Miya; Matt Friedman; Takashi P Satoh; Hirohiko Takeshima; Tetsuya Sado; Wataru Iwasaki; Yusuke Yamanoue; Masanori Nakatani; Kohji Mabuchi; Jun G Inoue; Jan Yde Poulsen; Tsukasa Fukunaga; Yukuto Sato; Mutsumi Nishida
Journal:  PLoS One       Date:  2013-09-04       Impact factor: 3.240

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