Literature DB >> 23125816

(2E)-2-{[3-Methyl-5-(2-naphth-yloxy)-1-phenyl-1H-pyrazol-4-yl]methyl-idene}hydrazinecarbothio-amide monohydrate.

Hoong-Kun Fun1, Tze Shyang Chia, Shobhitha Shetty, Balakrishna Kalluraya.   

Abstract

In the title compound, C(22)H(19)N(5)OS·H(2)O, the naphthalene ring system and the benzene ring [dihedral angle = 85.19 (8)°] make dihedral angles of 87.02 (9) and 14.41 (10)°, respectively, with the pyrazole ring. The mean plane through the 2-methyl-enehydrazinecarbothio-amide group [C-N-N-C(=S)-N; maximum deviation = 0.022 (1) Å] is slightly twisted from the pyrazole ring [dihedral angle = 5.60 (11)°]. In the crystal, mol-ecules are linked by N-H⋯S, N-H⋯O, O-H⋯S, O-H⋯N and C-H⋯S hydrogen bonds into sheets parallel to the ab plane. π-π inter-actions are also observed [centroid-to-centroid distances = 3.7778 (12) and 3.7010 (12) Å].

Entities:  

Year:  2012        PMID: 23125816      PMCID: PMC3470403          DOI: 10.1107/S1600536812039815

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activities of pyrazoles and their derivatives, see: Rai et al. (2008 ▶); Hall et al. (2008 ▶); Isloor et al. (2009 ▶); Girisha et al. (2010 ▶). For the stability of the temperature controller used for data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C22H19N5OS·H2O M = 419.50 Triclinic, a = 7.9384 (2) Å b = 11.1512 (2) Å c = 13.0325 (3) Å α = 113.481 (1)° β = 90.942 (1)° γ = 107.359 (1)° V = 997.81 (4) Å3 Z = 2 Mo Kα radiation μ = 0.19 mm−1 T = 100 K 0.41 × 0.22 × 0.17 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.925, T max = 0.967 15860 measured reflections 4542 independent reflections 3499 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.124 S = 1.04 4542 reflections 292 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812039815/rz5007sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812039815/rz5007Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812039815/rz5007Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H19N5OS·H2OZ = 2
Mr = 419.50F(000) = 440
Triclinic, P1Dx = 1.396 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.9384 (2) ÅCell parameters from 5898 reflections
b = 11.1512 (2) Åθ = 2.7–29.9°
c = 13.0325 (3) ŵ = 0.19 mm1
α = 113.481 (1)°T = 100 K
β = 90.942 (1)°Block, yellow
γ = 107.359 (1)°0.41 × 0.22 × 0.17 mm
V = 997.81 (4) Å3
Bruker SMART APEXII CCD diffractometer4542 independent reflections
Radiation source: fine-focus sealed tube3499 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
φ and ω scansθmax = 27.5°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→10
Tmin = 0.925, Tmax = 0.967k = −14→14
15860 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0598P)2 + 0.5141P] where P = (Fo2 + 2Fc2)/3
4542 reflections(Δ/σ)max < 0.001
292 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.33 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.57687 (7)0.72177 (5)0.01468 (4)0.02486 (14)
O1−0.19366 (17)0.59419 (13)0.21670 (11)0.0213 (3)
O1W0.3788 (2)1.05291 (17)0.10581 (15)0.0346 (4)
N1−0.3199 (2)0.39469 (16)0.25166 (13)0.0191 (3)
N2−0.2933 (2)0.27084 (16)0.23124 (14)0.0206 (3)
N30.1454 (2)0.55365 (17)0.11750 (14)0.0232 (4)
N40.3012 (2)0.57326 (18)0.07115 (14)0.0233 (4)
N50.3021 (2)0.79095 (19)0.10655 (15)0.0248 (4)
C10.0100 (2)0.7186 (2)0.39444 (16)0.0198 (4)
H1A−0.02390.63860.40940.024*
C20.1399 (2)0.84368 (19)0.47281 (16)0.0197 (4)
C30.2230 (3)0.8533 (2)0.57417 (16)0.0216 (4)
H3A0.19040.77520.59160.026*
C40.3494 (3)0.9740 (2)0.64713 (17)0.0245 (4)
H4A0.40400.97880.71470.029*
C50.3998 (3)1.0916 (2)0.62329 (17)0.0237 (4)
H5A0.48851.17480.67440.028*
C60.3209 (3)1.0856 (2)0.52650 (17)0.0226 (4)
H6A0.35501.16520.51110.027*
C70.1886 (2)0.96195 (19)0.44872 (16)0.0192 (4)
C80.1020 (3)0.9522 (2)0.34795 (16)0.0220 (4)
H8A0.13211.03120.33170.026*
C9−0.0238 (3)0.8314 (2)0.27380 (16)0.0217 (4)
H9A−0.08220.82660.20740.026*
C10−0.0654 (2)0.71408 (19)0.29778 (16)0.0193 (4)
C11−0.5279 (3)0.5262 (2)0.30213 (16)0.0229 (4)
H11A−0.47000.58110.26460.027*
C12−0.6720 (3)0.5495 (2)0.35584 (17)0.0248 (4)
H12A−0.71040.62290.35690.030*
C13−0.7608 (3)0.4676 (2)0.40784 (17)0.0258 (4)
H13A−0.86060.48350.44310.031*
C14−0.7026 (3)0.3621 (2)0.40795 (17)0.0252 (4)
H14A−0.76340.30530.44320.030*
C15−0.5566 (3)0.3391 (2)0.35700 (16)0.0222 (4)
H15A−0.51620.26750.35820.027*
C16−0.4695 (2)0.42118 (19)0.30412 (16)0.0190 (4)
C17−0.1488 (2)0.2736 (2)0.18121 (16)0.0203 (4)
C18−0.0785 (2)0.3980 (2)0.16783 (16)0.0205 (4)
C19−0.1928 (2)0.47093 (19)0.21273 (16)0.0191 (4)
C200.0800 (3)0.4335 (2)0.11819 (16)0.0223 (4)
H20A0.13730.36650.08530.027*
C210.3835 (3)0.6963 (2)0.06758 (15)0.0196 (4)
C22−0.0798 (3)0.1541 (2)0.14558 (18)0.0269 (4)
H22A−0.15850.08080.16320.040*
H22B0.04100.18530.18630.040*
H22C−0.07680.11800.06390.040*
H1N40.353 (3)0.504 (3)0.044 (2)0.039 (7)*
H2N50.346 (4)0.872 (3)0.103 (2)0.049 (8)*
H1N50.206 (3)0.770 (3)0.137 (2)0.039 (7)*
H2W10.367 (4)1.077 (3)0.045 (3)0.066 (10)*
H1W10.478 (4)1.114 (4)0.152 (3)0.071 (10)*
U11U22U33U12U13U23
S10.0260 (3)0.0226 (3)0.0313 (3)0.0092 (2)0.0110 (2)0.0157 (2)
O10.0210 (7)0.0147 (7)0.0275 (7)0.0045 (5)0.0013 (5)0.0095 (6)
O1W0.0398 (9)0.0229 (8)0.0378 (9)0.0026 (7)−0.0007 (8)0.0156 (7)
N10.0204 (8)0.0158 (8)0.0233 (8)0.0078 (6)0.0040 (6)0.0092 (7)
N20.0230 (8)0.0155 (8)0.0258 (8)0.0080 (7)0.0042 (7)0.0098 (7)
N30.0234 (8)0.0221 (9)0.0245 (8)0.0069 (7)0.0065 (7)0.0106 (7)
N40.0250 (9)0.0214 (9)0.0271 (9)0.0100 (7)0.0104 (7)0.0118 (7)
N50.0272 (9)0.0199 (9)0.0307 (9)0.0092 (7)0.0101 (8)0.0129 (8)
C10.0203 (9)0.0176 (9)0.0258 (10)0.0082 (8)0.0084 (8)0.0118 (8)
C20.0197 (9)0.0185 (9)0.0243 (10)0.0097 (8)0.0081 (7)0.0098 (8)
C30.0245 (10)0.0190 (10)0.0261 (10)0.0102 (8)0.0071 (8)0.0119 (8)
C40.0255 (10)0.0247 (11)0.0240 (10)0.0104 (8)0.0040 (8)0.0097 (9)
C50.0229 (10)0.0193 (10)0.0267 (10)0.0064 (8)0.0040 (8)0.0079 (8)
C60.0243 (10)0.0165 (9)0.0295 (10)0.0085 (8)0.0091 (8)0.0108 (8)
C70.0201 (9)0.0183 (9)0.0227 (9)0.0097 (7)0.0087 (7)0.0095 (8)
C80.0261 (10)0.0181 (9)0.0269 (10)0.0099 (8)0.0091 (8)0.0124 (8)
C90.0243 (10)0.0208 (10)0.0235 (10)0.0091 (8)0.0064 (8)0.0117 (8)
C100.0157 (9)0.0167 (9)0.0255 (10)0.0058 (7)0.0061 (7)0.0084 (8)
C110.0243 (10)0.0219 (10)0.0253 (10)0.0095 (8)0.0052 (8)0.0115 (8)
C120.0256 (10)0.0225 (10)0.0302 (11)0.0125 (8)0.0046 (8)0.0116 (9)
C130.0230 (10)0.0276 (11)0.0288 (11)0.0111 (9)0.0083 (8)0.0119 (9)
C140.0247 (10)0.0219 (10)0.0292 (11)0.0060 (8)0.0073 (8)0.0122 (9)
C150.0234 (10)0.0184 (10)0.0257 (10)0.0076 (8)0.0033 (8)0.0098 (8)
C160.0177 (9)0.0178 (9)0.0202 (9)0.0064 (7)0.0029 (7)0.0063 (8)
C170.0210 (9)0.0167 (9)0.0212 (9)0.0055 (7)0.0012 (7)0.0068 (8)
C180.0218 (9)0.0177 (9)0.0226 (9)0.0061 (8)0.0037 (7)0.0094 (8)
C190.0190 (9)0.0152 (9)0.0220 (9)0.0033 (7)0.0014 (7)0.0086 (8)
C200.0237 (10)0.0199 (10)0.0257 (10)0.0091 (8)0.0053 (8)0.0106 (8)
C210.0251 (10)0.0169 (9)0.0168 (9)0.0065 (8)0.0016 (7)0.0077 (8)
C220.0270 (10)0.0210 (10)0.0348 (11)0.0108 (8)0.0083 (9)0.0116 (9)
S1—C211.6859 (19)C6—C71.421 (3)
O1—C191.357 (2)C6—H6A0.9500
O1—C101.403 (2)C7—C81.422 (3)
O1W—H2W10.94 (3)C8—C91.369 (3)
O1W—H1W10.88 (3)C8—H8A0.9500
N1—C191.359 (2)C9—C101.410 (3)
N1—N21.380 (2)C9—H9A0.9500
N1—C161.428 (2)C11—C121.388 (3)
N2—C171.327 (2)C11—C161.391 (3)
N3—C201.289 (2)C11—H11A0.9500
N3—N41.383 (2)C12—C131.384 (3)
N4—C211.352 (2)C12—H12A0.9500
N4—H1N40.93 (3)C13—C141.386 (3)
N5—C211.335 (3)C13—H13A0.9500
N5—H2N50.89 (3)C14—C151.385 (3)
N5—H1N50.88 (3)C14—H14A0.9500
C1—C101.362 (3)C15—C161.390 (3)
C1—C21.423 (3)C15—H15A0.9500
C1—H1A0.9500C17—C181.414 (3)
C2—C31.417 (3)C17—C221.497 (3)
C2—C71.420 (3)C18—C191.381 (3)
C3—C41.366 (3)C18—C201.446 (3)
C3—H3A0.9500C20—H20A0.9500
C4—C51.411 (3)C22—H22A0.9800
C4—H4A0.9500C22—H22B0.9800
C5—C61.368 (3)C22—H22C0.9800
C5—H5A0.9500
C19—O1—C10116.98 (14)C1—C10—C9122.20 (18)
H2W1—O1W—H1W1107 (3)O1—C10—C9115.16 (16)
C19—N1—N2110.16 (15)C12—C11—C16118.91 (18)
C19—N1—C16131.06 (16)C12—C11—H11A120.5
N2—N1—C16118.75 (15)C16—C11—H11A120.5
C17—N2—N1105.70 (15)C13—C12—C11121.09 (19)
C20—N3—N4114.56 (16)C13—C12—H12A119.5
C21—N4—N3119.81 (16)C11—C12—H12A119.5
C21—N4—H1N4118.9 (16)C12—C13—C14119.39 (18)
N3—N4—H1N4121.3 (16)C12—C13—H13A120.3
C21—N5—H2N5120.8 (18)C14—C13—H13A120.3
C21—N5—H1N5117.0 (17)C15—C14—C13120.44 (19)
H2N5—N5—H1N5122 (2)C15—C14—H14A119.8
C10—C1—C2119.59 (17)C13—C14—H14A119.8
C10—C1—H1A120.2C14—C15—C16119.67 (18)
C2—C1—H1A120.2C14—C15—H15A120.2
C3—C2—C7119.00 (17)C16—C15—H15A120.2
C3—C2—C1121.73 (17)C15—C16—C11120.46 (17)
C7—C2—C1119.27 (17)C15—C16—N1118.54 (17)
C4—C3—C2120.58 (18)C11—C16—N1121.00 (17)
C4—C3—H3A119.7N2—C17—C18111.53 (16)
C2—C3—H3A119.7N2—C17—C22120.73 (17)
C3—C4—C5120.78 (19)C18—C17—C22127.74 (17)
C3—C4—H4A119.6C19—C18—C17104.38 (16)
C5—C4—H4A119.6C19—C18—C20130.63 (18)
C6—C5—C4119.91 (19)C17—C18—C20124.98 (17)
C6—C5—H5A120.0O1—C19—N1122.18 (16)
C4—C5—H5A120.0O1—C19—C18129.54 (17)
C5—C6—C7120.90 (18)N1—C19—C18108.22 (16)
C5—C6—H6A119.6N3—C20—C18121.63 (18)
C7—C6—H6A119.6N3—C20—H20A119.2
C2—C7—C6118.82 (17)C18—C20—H20A119.2
C2—C7—C8118.63 (17)N5—C21—N4116.22 (17)
C6—C7—C8122.55 (17)N5—C21—S1123.99 (15)
C9—C8—C7121.42 (18)N4—C21—S1119.79 (14)
C9—C8—H8A119.3C17—C22—H22A109.5
C7—C8—H8A119.3C17—C22—H22B109.5
C8—C9—C10118.83 (18)H22A—C22—H22B109.5
C8—C9—H9A120.6C17—C22—H22C109.5
C10—C9—H9A120.6H22A—C22—H22C109.5
C1—C10—O1122.62 (17)H22B—C22—H22C109.5
C19—N1—N2—C170.7 (2)C14—C15—C16—C110.0 (3)
C16—N1—N2—C17179.09 (16)C14—C15—C16—N1−179.64 (17)
C20—N3—N4—C21−178.93 (17)C12—C11—C16—C151.4 (3)
C10—C1—C2—C3−179.63 (17)C12—C11—C16—N1−178.98 (17)
C10—C1—C2—C70.0 (3)C19—N1—C16—C15−166.70 (19)
C7—C2—C3—C4−0.7 (3)N2—N1—C16—C1515.3 (2)
C1—C2—C3—C4178.93 (18)C19—N1—C16—C1113.6 (3)
C2—C3—C4—C50.1 (3)N2—N1—C16—C11−164.33 (17)
C3—C4—C5—C60.4 (3)N1—N2—C17—C18−0.1 (2)
C4—C5—C6—C7−0.3 (3)N1—N2—C17—C22−179.62 (17)
C3—C2—C7—C60.8 (3)N2—C17—C18—C19−0.6 (2)
C1—C2—C7—C6−178.83 (16)C22—C17—C18—C19178.93 (19)
C3—C2—C7—C8−178.74 (16)N2—C17—C18—C20178.86 (17)
C1—C2—C7—C81.6 (3)C22—C17—C18—C20−1.6 (3)
C5—C6—C7—C2−0.3 (3)C10—O1—C19—N1106.6 (2)
C5—C6—C7—C8179.23 (18)C10—O1—C19—C18−76.5 (2)
C2—C7—C8—C9−1.1 (3)N2—N1—C19—O1176.39 (16)
C6—C7—C8—C9179.36 (18)C16—N1—C19—O1−1.7 (3)
C7—C8—C9—C10−1.0 (3)N2—N1—C19—C18−1.1 (2)
C2—C1—C10—O1179.76 (16)C16—N1—C19—C18−179.22 (18)
C2—C1—C10—C9−2.2 (3)C17—C18—C19—O1−176.24 (18)
C19—O1—C10—C1−24.8 (2)C20—C18—C19—O14.3 (3)
C19—O1—C10—C9157.06 (16)C17—C18—C19—N11.0 (2)
C8—C9—C10—C12.8 (3)C20—C18—C19—N1−178.40 (19)
C8—C9—C10—O1−179.09 (16)N4—N3—C20—C18177.44 (17)
C16—C11—C12—C13−2.0 (3)C19—C18—C20—N35.4 (3)
C11—C12—C13—C141.2 (3)C17—C18—C20—N3−173.91 (19)
C12—C13—C14—C150.3 (3)N3—N4—C21—N5−2.4 (3)
C13—C14—C15—C16−0.9 (3)N3—N4—C21—S1178.15 (13)
D—H···AD—HH···AD···AD—H···A
N4—H1N4···S1i0.93 (3)2.56 (3)3.466 (2)165 (3)
N5—H2N5···O1W0.89 (3)1.94 (3)2.805 (3)164 (3)
O1W—H2W1···S1ii0.94 (4)2.58 (4)3.397 (2)145 (3)
O1W—H1W1···N2iii0.89 (4)2.01 (4)2.876 (3)167 (4)
C20—H20A···S1i0.952.873.741 (2)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N4—H1N4⋯S1i 0.93 (3)2.56 (3)3.466 (2)165 (3)
N5—H2N5⋯O1W 0.89 (3)1.94 (3)2.805 (3)164 (3)
O1W—H2W1⋯S1ii 0.94 (4)2.58 (4)3.397 (2)145 (3)
O1W—H1W1⋯N2iii 0.89 (4)2.01 (4)2.876 (3)167 (4)
C20—H20A⋯S1i 0.952.873.741 (2)153

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  K S Girisha; Balakrishna Kalluraya; Vijaya Narayana
Journal:  Eur J Med Chem       Date:  2010-07-24       Impact factor: 6.514

5.  Convenient access to 1,3,4-trisubstituted pyrazoles carrying 5-nitrothiophene moiety via 1,3-dipolar cycloaddition of sydnones with acetylenic ketones and their antimicrobial evaluation.

Authors:  N Satheesha Rai; Balakrishna Kalluraya; B Lingappa; Shaliny Shenoy; Vedavati G Puranic
Journal:  Eur J Med Chem       Date:  2007-08-30       Impact factor: 6.514

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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