Literature DB >> 23125808

3-Methyl-5-methyl-sulfanyl-1,3,4-thia-diazole-2(3H)-thione.

Sebastian A Suarez1, Saroj K S Hazari, Biplab Ganguly, Fabio Doctorovich, Tapashi G Roy, Ricardo Baggio.   

Abstract

The title compound, C(4)H(6)N(2)S(3), has two very similar mol-ecules per asymmetric unit. The nine non-H atoms in each mol-ecule are coplanar, both having comparable r.m.s. deviations of 0.002 Å. The main inter-est in the rather simple structure resides in a survey of very weak (in some cases, borderline) non-bonding inter-actions of various kinds, viz. S⋯S, C-H⋯π, π-π [centroid-centroid distance = 3.8958 (13) Å] and C-S⋯π [3.7271 (11) Å], which act as the major driving force for the arrangement of mol-ecules in the structure. The role of long, though highly directional, S⋯S contacts (d > 3.60 Å), and their relevance to the stability of the structure is discussed.

Entities:  

Year:  2012        PMID: 23125808      PMCID: PMC3470395          DOI: 10.1107/S1600536812040147

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and characterization of the title compound, see: Espinosa et al. (2010 ▶); Thorn (1960 ▶). For the reactivity of thia­diazole, see: Espinosa et al. (2010 ▶). For significance of weak S⋯S inter­actions and for the role of weak inter­actions in the absence of stronger ones, see: Allen (2002 ▶); Bats (1976 ▶); Bondi (1964 ▶); Desiraju & Steiner (1999 ▶); Mrozek et al. (2000 ▶); Iwaoka & Isozumi (2012 ▶).

Experimental

Crystal data

C4H6N2S3 M = 178.30 Monoclinic, a = 9.3505 (4) Å b = 22.4118 (9) Å c = 7.6682 (5) Å β = 106.661 (5)° V = 1539.50 (14) Å3 Z = 8 Mo Kα radiation μ = 0.88 mm−1 T = 295 K 0.3 × 0.2 × 0.2 mm

Data collection

Oxford Diffraction Gemini CCD S Ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.81, T max = 0.84 32965 measured reflections 3821 independent reflections 2690 reflections with I > 2σ(I) R int = 0.060

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.102 S = 1.04 3821 reflections 167 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009) ▶. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812040147/zl2506sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812040147/zl2506Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812040147/zl2506Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H6N2S3F(000) = 736
Mr = 178.30Dx = 1.539 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6608 reflections
a = 9.3505 (4) Åθ = 3.5–29.0°
b = 22.4118 (9) ŵ = 0.88 mm1
c = 7.6682 (5) ÅT = 295 K
β = 106.661 (5)°Prism, colourless
V = 1539.50 (14) Å30.3 × 0.2 × 0.2 mm
Z = 8
Oxford Diffraction Gemini CCD S Ultra diffractometer3821 independent reflections
Radiation source: fine-focus sealed tube2690 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.060
ω scans, thick slicesθmax = 29.1°, θmin = 3.5°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)h = −12→12
Tmin = 0.81, Tmax = 0.84k = −30→29
32965 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0398P)2 + 0.5703P] where P = (Fo2 + 2Fc2)/3
3821 reflections(Δ/σ)max = 0.001
167 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C30.3939 (3)0.57279 (10)0.1948 (4)0.0553 (6)
H3A0.47180.58360.30190.083*
H3B0.32520.60540.1590.083*
H3C0.43660.56370.0980.083*
C4−0.1404 (3)0.54132 (12)0.2162 (4)0.0595 (7)
H4A−0.09150.56860.31120.089*
H4B−0.24580.54140.20220.089*
H4C−0.12280.55340.10410.089*
C70.0292 (3)0.67498 (11)0.0189 (4)0.0588 (7)
H7A−0.00330.67330.12670.088*
H7B0.08490.63960.0110.088*
H7C−0.05610.6776−0.08630.088*
C80.5833 (3)0.70055 (13)0.0599 (4)0.0654 (7)
H8A0.570.68180.16680.098*
H8B0.68670.69880.06350.098*
H8C0.52430.6801−0.04640.098*
S30.55055 (7)0.44639 (3)0.29305 (10)0.05657 (19)
S10.24366 (7)0.42026 (3)0.32098 (9)0.04892 (17)
S2−0.06774 (7)0.46747 (3)0.27437 (9)0.05080 (17)
N10.3150 (2)0.52053 (8)0.2336 (3)0.0406 (4)
N20.1669 (2)0.52810 (8)0.2290 (3)0.0420 (4)
C10.3770 (2)0.46736 (9)0.2779 (3)0.0404 (5)
C20.1153 (2)0.47832 (10)0.2715 (3)0.0414 (5)
S6−0.09695 (7)0.80636 (3)0.00218 (11)0.0622 (2)
S40.22529 (7)0.83027 (3)0.03346 (10)0.05732 (19)
S50.52524 (7)0.77719 (3)0.05225 (10)0.0598 (2)
N30.1238 (2)0.72729 (8)0.0269 (3)0.0432 (4)
N40.2722 (2)0.71785 (8)0.0383 (3)0.0469 (5)
C50.0747 (2)0.78324 (10)0.0200 (3)0.0427 (5)
C60.3387 (3)0.76844 (10)0.0417 (3)0.0445 (5)
U11U22U33U12U13U23
C30.0555 (15)0.0384 (13)0.0799 (18)−0.0036 (11)0.0321 (14)0.0124 (12)
C40.0447 (14)0.0685 (17)0.0683 (17)0.0017 (12)0.0212 (13)0.0040 (13)
C70.0499 (14)0.0406 (13)0.0840 (19)−0.0117 (11)0.0164 (13)−0.0036 (12)
C80.0453 (14)0.0712 (18)0.083 (2)0.0059 (13)0.0242 (14)0.0050 (15)
S30.0457 (3)0.0504 (4)0.0778 (5)0.0068 (3)0.0244 (3)0.0075 (3)
S10.0477 (3)0.0377 (3)0.0634 (4)−0.0060 (2)0.0192 (3)0.0043 (3)
S20.0418 (3)0.0538 (4)0.0603 (4)−0.0103 (3)0.0203 (3)−0.0044 (3)
N10.0373 (9)0.0368 (10)0.0511 (11)−0.0027 (8)0.0179 (8)0.0035 (8)
N20.0384 (10)0.0408 (10)0.0489 (11)−0.0009 (8)0.0158 (8)0.0011 (8)
C10.0428 (12)0.0364 (11)0.0439 (12)−0.0031 (9)0.0155 (10)0.0012 (9)
C20.0426 (12)0.0432 (12)0.0402 (12)−0.0044 (10)0.0146 (10)−0.0048 (9)
S60.0477 (4)0.0524 (4)0.0906 (5)0.0060 (3)0.0264 (4)−0.0029 (3)
S40.0507 (4)0.0375 (3)0.0862 (5)−0.0065 (3)0.0235 (3)−0.0008 (3)
S50.0433 (3)0.0608 (4)0.0790 (5)−0.0070 (3)0.0235 (3)0.0066 (3)
N30.0355 (9)0.0385 (10)0.0559 (12)−0.0022 (8)0.0134 (9)−0.0012 (8)
N40.0389 (10)0.0429 (11)0.0586 (12)−0.0011 (8)0.0136 (9)0.0008 (9)
C50.0422 (12)0.0389 (12)0.0480 (13)−0.0049 (10)0.0148 (10)−0.0036 (10)
C60.0399 (12)0.0467 (13)0.0472 (13)−0.0025 (10)0.0129 (10)0.0017 (10)
C3—N11.460 (3)C8—H8C0.96
C3—H3A0.96S3—C11.662 (2)
C3—H3B0.96S1—C11.736 (2)
C3—H3C0.96S1—C21.737 (2)
C4—S21.796 (3)S2—C21.735 (2)
C4—H4A0.96N1—C11.326 (3)
C4—H4B0.96N1—N21.385 (2)
C4—H4C0.96N2—C21.294 (3)
C7—N31.459 (3)S6—C51.655 (2)
C7—H7A0.96S4—C61.735 (2)
C7—H7B0.96S4—C51.738 (2)
C7—H7C0.96S5—C61.734 (2)
C8—S51.797 (3)N3—C51.331 (3)
C8—H8A0.96N3—N41.382 (3)
C8—H8B0.96N4—C61.289 (3)
S3···S2i3.6438 (10)S1···S6v3.3621 (10)
S2···S2ii3.6319 (9)S1···S5iv3.8332 (11)
S6···S5iii3.7189 (11)S2···S4v3.8778 (10)
S3···S4iv3.3671 (10)
N1—C3—H3A109.5C1—S1—C289.52 (10)
N1—C3—H3B109.5C2—S2—C499.90 (11)
H3A—C3—H3B109.5C1—N1—N2118.46 (17)
N1—C3—H3C109.5C1—N1—C3124.32 (19)
H3A—C3—H3C109.5N2—N1—C3117.18 (17)
H3B—C3—H3C109.5C2—N2—N1109.28 (18)
S2—C4—H4A109.5N1—C1—S3128.21 (17)
S2—C4—H4B109.5N1—C1—S1108.08 (16)
H4A—C4—H4B109.5S3—C1—S1123.71 (13)
S2—C4—H4C109.5N2—C2—S2124.35 (18)
H4A—C4—H4C109.5N2—C2—S1114.66 (17)
H4B—C4—H4C109.5S2—C2—S1120.96 (13)
N3—C7—H7A109.5C6—S4—C589.64 (11)
N3—C7—H7B109.5C6—S5—C8100.60 (12)
H7A—C7—H7B109.5C5—N3—N4118.36 (18)
N3—C7—H7C109.5C5—N3—C7123.90 (19)
H7A—C7—H7C109.5N4—N3—C7117.72 (18)
H7B—C7—H7C109.5C6—N4—N3109.63 (18)
S5—C8—H8A109.5N3—C5—S6127.83 (17)
S5—C8—H8B109.5N3—C5—S4107.77 (16)
H8A—C8—H8B109.5S6—C5—S4124.40 (14)
S5—C8—H8C109.5N4—C6—S5124.94 (18)
H8A—C8—H8C109.5N4—C6—S4114.57 (17)
H8B—C8—H8C109.5S5—C6—S4120.49 (13)
D—H···AD—HH···AD···AD—H···A
C4—H4C···Cg1vi0.962.863.589 (3)134
G1···G2d(G1-G2)(Å)d(G1-G1*)(Å)<G1*-G1-G2>(°)
Cg2···Cg2vii3.8958 (13)3.7320 (9)16.27 (2)
S3···Cg1viii3.7271 (11)3.5532 (13)17.66 (2)
(I)(II)*(III)
3.3621 (10)[-0.24]3.565[-0.04]3.577 (4)[-0.03]
3.3671 (10)[-0.23]3.694[+0.09]3.890 (4)[+0.29]
3.6319( 9)[+0.03]3.771[+0.17]3.906 (4)[+0.30]
3.6438 (10)[+0.04]3.924[+0.32]3.975 (4)[+0.37]
3.7189 (11)[+0.11]
3.8332 (11)[+0.23]
3.8778 (10)[+0.28]
Table 1

Selected interatomic distances (Å)

S3⋯S2i 3.6438 (10)
S2⋯S2ii 3.6319 (9)
S6⋯S5iii 3.7189 (11)
S3⋯S4iv 3.3671 (10)
S1⋯S6v 3.3621 (10)
S1⋯S5iv 3.8332 (11)
S2⋯S4v 3.8778 (10)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

Table 2

C—H⋯π interaction (Å, °)

Cg1 is the centroid of the C1,C2,N1,N2,S1 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4CCg1vi 0.962.863.589 (3)134

Symmetry code: (vi) .

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