| Literature DB >> 23125808 |
Sebastian A Suarez1, Saroj K S Hazari, Biplab Ganguly, Fabio Doctorovich, Tapashi G Roy, Ricardo Baggio.
Abstract
The title compound, C(4)H(6)N(2)S(3), has two very similar mol-ecules per asymmetric unit. The nine non-H atoms in each mol-ecule are coplanar, both having comparable r.m.s. deviations of 0.002 Å. The main inter-est in the rather simple structure resides in a survey of very weak (in some cases, borderline) non-bonding inter-actions of various kinds, viz. S⋯S, C-H⋯π, π-π [centroid-centroid distance = 3.8958 (13) Å] and C-S⋯π [3.7271 (11) Å], which act as the major driving force for the arrangement of mol-ecules in the structure. The role of long, though highly directional, S⋯S contacts (d > 3.60 Å), and their relevance to the stability of the structure is discussed.Entities:
Year: 2012 PMID: 23125808 PMCID: PMC3470395 DOI: 10.1107/S1600536812040147
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C4H6N2S3 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 6608 reflections |
| θ = 3.5–29.0° | |
| µ = 0.88 mm−1 | |
| β = 106.661 (5)° | Prism, colourless |
| 0.3 × 0.2 × 0.2 mm | |
| Oxford Diffraction Gemini CCD S Ultra diffractometer | 3821 independent reflections |
| Radiation source: fine-focus sealed tube | 2690 reflections with |
| Graphite monochromator | |
| ω scans, thick slices | θmax = 29.1°, θmin = 3.5° |
| Absorption correction: multi-scan ( | |
| 32965 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3821 reflections | (Δ/σ)max = 0.001 |
| 167 parameters | Δρmax = 0.25 e Å−3 |
| 0 restraints | Δρmin = −0.27 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C3 | 0.3939 (3) | 0.57279 (10) | 0.1948 (4) | 0.0553 (6) | |
| H3A | 0.4718 | 0.5836 | 0.3019 | 0.083* | |
| H3B | 0.3252 | 0.6054 | 0.159 | 0.083* | |
| H3C | 0.4366 | 0.5637 | 0.098 | 0.083* | |
| C4 | −0.1404 (3) | 0.54132 (12) | 0.2162 (4) | 0.0595 (7) | |
| H4A | −0.0915 | 0.5686 | 0.3112 | 0.089* | |
| H4B | −0.2458 | 0.5414 | 0.2022 | 0.089* | |
| H4C | −0.1228 | 0.5534 | 0.1041 | 0.089* | |
| C7 | 0.0292 (3) | 0.67498 (11) | 0.0189 (4) | 0.0588 (7) | |
| H7A | −0.0033 | 0.6733 | 0.1267 | 0.088* | |
| H7B | 0.0849 | 0.6396 | 0.011 | 0.088* | |
| H7C | −0.0561 | 0.6776 | −0.0863 | 0.088* | |
| C8 | 0.5833 (3) | 0.70055 (13) | 0.0599 (4) | 0.0654 (7) | |
| H8A | 0.57 | 0.6818 | 0.1668 | 0.098* | |
| H8B | 0.6867 | 0.6988 | 0.0635 | 0.098* | |
| H8C | 0.5243 | 0.6801 | −0.0464 | 0.098* | |
| S3 | 0.55055 (7) | 0.44639 (3) | 0.29305 (10) | 0.05657 (19) | |
| S1 | 0.24366 (7) | 0.42026 (3) | 0.32098 (9) | 0.04892 (17) | |
| S2 | −0.06774 (7) | 0.46747 (3) | 0.27437 (9) | 0.05080 (17) | |
| N1 | 0.3150 (2) | 0.52053 (8) | 0.2336 (3) | 0.0406 (4) | |
| N2 | 0.1669 (2) | 0.52810 (8) | 0.2290 (3) | 0.0420 (4) | |
| C1 | 0.3770 (2) | 0.46736 (9) | 0.2779 (3) | 0.0404 (5) | |
| C2 | 0.1153 (2) | 0.47832 (10) | 0.2715 (3) | 0.0414 (5) | |
| S6 | −0.09695 (7) | 0.80636 (3) | 0.00218 (11) | 0.0622 (2) | |
| S4 | 0.22529 (7) | 0.83027 (3) | 0.03346 (10) | 0.05732 (19) | |
| S5 | 0.52524 (7) | 0.77719 (3) | 0.05225 (10) | 0.0598 (2) | |
| N3 | 0.1238 (2) | 0.72729 (8) | 0.0269 (3) | 0.0432 (4) | |
| N4 | 0.2722 (2) | 0.71785 (8) | 0.0383 (3) | 0.0469 (5) | |
| C5 | 0.0747 (2) | 0.78324 (10) | 0.0200 (3) | 0.0427 (5) | |
| C6 | 0.3387 (3) | 0.76844 (10) | 0.0417 (3) | 0.0445 (5) |
| C3 | 0.0555 (15) | 0.0384 (13) | 0.0799 (18) | −0.0036 (11) | 0.0321 (14) | 0.0124 (12) |
| C4 | 0.0447 (14) | 0.0685 (17) | 0.0683 (17) | 0.0017 (12) | 0.0212 (13) | 0.0040 (13) |
| C7 | 0.0499 (14) | 0.0406 (13) | 0.0840 (19) | −0.0117 (11) | 0.0164 (13) | −0.0036 (12) |
| C8 | 0.0453 (14) | 0.0712 (18) | 0.083 (2) | 0.0059 (13) | 0.0242 (14) | 0.0050 (15) |
| S3 | 0.0457 (3) | 0.0504 (4) | 0.0778 (5) | 0.0068 (3) | 0.0244 (3) | 0.0075 (3) |
| S1 | 0.0477 (3) | 0.0377 (3) | 0.0634 (4) | −0.0060 (2) | 0.0192 (3) | 0.0043 (3) |
| S2 | 0.0418 (3) | 0.0538 (4) | 0.0603 (4) | −0.0103 (3) | 0.0203 (3) | −0.0044 (3) |
| N1 | 0.0373 (9) | 0.0368 (10) | 0.0511 (11) | −0.0027 (8) | 0.0179 (8) | 0.0035 (8) |
| N2 | 0.0384 (10) | 0.0408 (10) | 0.0489 (11) | −0.0009 (8) | 0.0158 (8) | 0.0011 (8) |
| C1 | 0.0428 (12) | 0.0364 (11) | 0.0439 (12) | −0.0031 (9) | 0.0155 (10) | 0.0012 (9) |
| C2 | 0.0426 (12) | 0.0432 (12) | 0.0402 (12) | −0.0044 (10) | 0.0146 (10) | −0.0048 (9) |
| S6 | 0.0477 (4) | 0.0524 (4) | 0.0906 (5) | 0.0060 (3) | 0.0264 (4) | −0.0029 (3) |
| S4 | 0.0507 (4) | 0.0375 (3) | 0.0862 (5) | −0.0065 (3) | 0.0235 (3) | −0.0008 (3) |
| S5 | 0.0433 (3) | 0.0608 (4) | 0.0790 (5) | −0.0070 (3) | 0.0235 (3) | 0.0066 (3) |
| N3 | 0.0355 (9) | 0.0385 (10) | 0.0559 (12) | −0.0022 (8) | 0.0134 (9) | −0.0012 (8) |
| N4 | 0.0389 (10) | 0.0429 (11) | 0.0586 (12) | −0.0011 (8) | 0.0136 (9) | 0.0008 (9) |
| C5 | 0.0422 (12) | 0.0389 (12) | 0.0480 (13) | −0.0049 (10) | 0.0148 (10) | −0.0036 (10) |
| C6 | 0.0399 (12) | 0.0467 (13) | 0.0472 (13) | −0.0025 (10) | 0.0129 (10) | 0.0017 (10) |
| C3—N1 | 1.460 (3) | C8—H8C | 0.96 |
| C3—H3A | 0.96 | S3—C1 | 1.662 (2) |
| C3—H3B | 0.96 | S1—C1 | 1.736 (2) |
| C3—H3C | 0.96 | S1—C2 | 1.737 (2) |
| C4—S2 | 1.796 (3) | S2—C2 | 1.735 (2) |
| C4—H4A | 0.96 | N1—C1 | 1.326 (3) |
| C4—H4B | 0.96 | N1—N2 | 1.385 (2) |
| C4—H4C | 0.96 | N2—C2 | 1.294 (3) |
| C7—N3 | 1.459 (3) | S6—C5 | 1.655 (2) |
| C7—H7A | 0.96 | S4—C6 | 1.735 (2) |
| C7—H7B | 0.96 | S4—C5 | 1.738 (2) |
| C7—H7C | 0.96 | S5—C6 | 1.734 (2) |
| C8—S5 | 1.797 (3) | N3—C5 | 1.331 (3) |
| C8—H8A | 0.96 | N3—N4 | 1.382 (3) |
| C8—H8B | 0.96 | N4—C6 | 1.289 (3) |
| S3···S2i | 3.6438 (10) | S1···S6v | 3.3621 (10) |
| S2···S2ii | 3.6319 (9) | S1···S5iv | 3.8332 (11) |
| S6···S5iii | 3.7189 (11) | S2···S4v | 3.8778 (10) |
| S3···S4iv | 3.3671 (10) | ||
| N1—C3—H3A | 109.5 | C1—S1—C2 | 89.52 (10) |
| N1—C3—H3B | 109.5 | C2—S2—C4 | 99.90 (11) |
| H3A—C3—H3B | 109.5 | C1—N1—N2 | 118.46 (17) |
| N1—C3—H3C | 109.5 | C1—N1—C3 | 124.32 (19) |
| H3A—C3—H3C | 109.5 | N2—N1—C3 | 117.18 (17) |
| H3B—C3—H3C | 109.5 | C2—N2—N1 | 109.28 (18) |
| S2—C4—H4A | 109.5 | N1—C1—S3 | 128.21 (17) |
| S2—C4—H4B | 109.5 | N1—C1—S1 | 108.08 (16) |
| H4A—C4—H4B | 109.5 | S3—C1—S1 | 123.71 (13) |
| S2—C4—H4C | 109.5 | N2—C2—S2 | 124.35 (18) |
| H4A—C4—H4C | 109.5 | N2—C2—S1 | 114.66 (17) |
| H4B—C4—H4C | 109.5 | S2—C2—S1 | 120.96 (13) |
| N3—C7—H7A | 109.5 | C6—S4—C5 | 89.64 (11) |
| N3—C7—H7B | 109.5 | C6—S5—C8 | 100.60 (12) |
| H7A—C7—H7B | 109.5 | C5—N3—N4 | 118.36 (18) |
| N3—C7—H7C | 109.5 | C5—N3—C7 | 123.90 (19) |
| H7A—C7—H7C | 109.5 | N4—N3—C7 | 117.72 (18) |
| H7B—C7—H7C | 109.5 | C6—N4—N3 | 109.63 (18) |
| S5—C8—H8A | 109.5 | N3—C5—S6 | 127.83 (17) |
| S5—C8—H8B | 109.5 | N3—C5—S4 | 107.77 (16) |
| H8A—C8—H8B | 109.5 | S6—C5—S4 | 124.40 (14) |
| S5—C8—H8C | 109.5 | N4—C6—S5 | 124.94 (18) |
| H8A—C8—H8C | 109.5 | N4—C6—S4 | 114.57 (17) |
| H8B—C8—H8C | 109.5 | S5—C6—S4 | 120.49 (13) |
| H··· | ||||
| C4—H4 | 0.96 | 2.86 | 3.589 (3) | 134 |
| G1···G2 | d(G1-G2)(Å) | d(G1-G1*)(Å) | <G1*-G1-G2>(°) |
| Cg2···Cg2vii | 3.8958 (13) | 3.7320 (9) | 16.27 (2) |
| S3···Cg1viii | 3.7271 (11) | 3.5532 (13) | 17.66 (2) |
| (I) | (II)* | (III) |
| 3.3621 (10)[-0.24] | 3.565[-0.04] | 3.577 (4)[-0.03] |
| 3.3671 (10)[-0.23] | 3.694[+0.09] | 3.890 (4)[+0.29] |
| 3.6319( 9)[+0.03] | 3.771[+0.17] | 3.906 (4)[+0.30] |
| 3.6438 (10)[+0.04] | 3.924[+0.32] | 3.975 (4)[+0.37] |
| 3.7189 (11)[+0.11] | ||
| 3.8332 (11)[+0.23] | ||
| 3.8778 (10)[+0.28] |
Selected interatomic distances (Å)
| S3⋯S2i | 3.6438 (10) |
| S2⋯S2ii | 3.6319 (9) |
| S6⋯S5iii | 3.7189 (11) |
| S3⋯S4iv | 3.3671 (10) |
| S1⋯S6v | 3.3621 (10) |
| S1⋯S5iv | 3.8332 (11) |
| S2⋯S4v | 3.8778 (10) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .
C—H⋯π interaction (Å, °)
Cg1 is the centroid of the C1,C2,N1,N2,S1 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C4—H4 | 0.96 | 2.86 | 3.589 (3) | 134 |
Symmetry code: (vi) .