Literature DB >> 23125799

Ethyl 2,4-dimethyl-pyrido[1,2-a]benz-imidazole-3-carboxyl-ate.

Ai Guo Zhu1, Zhuo Ming Ma, Lin Jie Li, Tian Tian Wei, Yan Qing Ge.   

Abstract

The title compound, C(16)H(16)N(2)O(2), was synthesized using a novel tandem annulation reaction between 1-(1H-benzo[d]imidazol-2-yl)ethanone and ethyl (E)-4-bromo-but-2-enoate under mild conditions. The dihedral angles formed by the mean plane of the five-membered imidazole ring with the dihydro-pyridin and benzene rings are 1.54 (9) and 1.85 (9)°, respectively.

Entities:  

Year:  2012        PMID: 23125799      PMCID: PMC3470386          DOI: 10.1107/S1600536812040299

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and characterization of pyrido[1,2-a]benz­imidazole derivatives, see: Ge et al. (2009 ▶, 2011 ▶). For pharmaceutical applications of nitro­gen-containing heterocyclic compounds, see: Badawey & Kappe (1999 ▶).

Experimental

Crystal data

C16H16N2O2 M = 268.31 Monoclinic, a = 7.671 (4) Å b = 13.174 (7) Å c = 13.807 (7) Å β = 102.680 (7)° V = 1361.3 (12) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 273 K 0.32 × 0.28 × 0.26 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.973, T max = 0.978 6894 measured reflections 2389 independent reflections 2056 reflections with I > 2σ(I) R int = 0.086

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.134 S = 1.05 2389 reflections 184 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812040299/rz5006sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812040299/rz5006Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812040299/rz5006Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16N2O2F(000) = 568
Mr = 268.31Dx = 1.309 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4261 reflections
a = 7.671 (4) Åθ = 3.0–28.2°
b = 13.174 (7) ŵ = 0.09 mm1
c = 13.807 (7) ÅT = 273 K
β = 102.680 (7)°Block, colourless
V = 1361.3 (12) Å30.32 × 0.28 × 0.26 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer2389 independent reflections
Radiation source: fine-focus sealed tube2056 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.086
phi and ω scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −5→9
Tmin = 0.973, Tmax = 0.978k = −15→14
6894 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.075P)2 + 0.2415P] where P = (Fo2 + 2Fc2)/3
2389 reflections(Δ/σ)max = 0.052
184 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.75792 (18)−0.01609 (10)0.27023 (9)0.0440 (4)
N20.72152 (15)−0.05514 (9)0.10717 (9)0.0351 (3)
O11.03253 (17)0.23943 (10)−0.01104 (10)0.0594 (4)
O20.80757 (16)0.30461 (8)0.04828 (9)0.0487 (3)
C10.7586 (4)0.47805 (16)0.07813 (19)0.0802 (7)
H1A0.63350.46810.05050.120*
H1B0.79070.54670.06640.120*
H1C0.78300.46540.14830.120*
C20.8641 (3)0.40713 (12)0.03063 (14)0.0531 (5)
H2A0.84290.4204−0.04010.064*
H2B0.99060.41550.05900.064*
C30.9069 (2)0.22855 (11)0.02743 (11)0.0400 (4)
C40.84263 (19)0.12847 (11)0.05743 (10)0.0365 (4)
C50.78468 (19)0.05213 (11)−0.01807 (10)0.0360 (4)
C60.72718 (19)−0.03754 (12)0.00956 (10)0.0373 (4)
H60.6910−0.0881−0.03760.045*
C70.77753 (19)0.01635 (11)0.18186 (10)0.0358 (3)
C80.84377 (19)0.11132 (11)0.15597 (11)0.0376 (4)
C90.9153 (2)0.18433 (13)0.23890 (12)0.0505 (4)
H9A1.00140.22840.21960.076*
H9B0.97140.14710.29720.076*
H9C0.81890.22410.25290.076*
C100.7900 (2)0.07044 (13)−0.12539 (11)0.0460 (4)
H10A0.74270.0123−0.16430.069*
H10B0.91130.0816−0.13060.069*
H10C0.71940.1291−0.14950.069*
C110.66408 (19)−0.13957 (11)0.15187 (11)0.0377 (4)
C120.6866 (2)−0.11231 (12)0.25233 (11)0.0410 (4)
C130.6335 (2)−0.18090 (14)0.31784 (13)0.0527 (5)
H130.6463−0.16520.38470.063*
C140.5616 (2)−0.27222 (14)0.28027 (14)0.0566 (5)
H140.5252−0.31830.32290.068*
C150.5415 (2)−0.29809 (13)0.17999 (14)0.0551 (5)
H150.4928−0.36070.15770.066*
C160.5929 (2)−0.23193 (12)0.11366 (13)0.0473 (4)
H160.5805−0.24840.04700.057*
U11U22U33U12U13U23
N10.0471 (8)0.0517 (8)0.0327 (7)−0.0038 (6)0.0078 (5)0.0015 (6)
N20.0331 (6)0.0393 (7)0.0329 (6)0.0012 (5)0.0070 (5)−0.0004 (5)
O10.0582 (8)0.0569 (7)0.0723 (9)−0.0017 (6)0.0340 (7)0.0058 (6)
O20.0493 (7)0.0397 (6)0.0601 (7)0.0010 (5)0.0186 (5)0.0031 (5)
C10.0948 (17)0.0504 (11)0.1022 (18)0.0057 (11)0.0363 (14)−0.0058 (11)
C20.0638 (11)0.0409 (9)0.0546 (10)−0.0031 (8)0.0126 (8)0.0046 (8)
C30.0396 (8)0.0440 (9)0.0363 (8)0.0011 (7)0.0080 (6)0.0016 (6)
C40.0319 (7)0.0413 (8)0.0366 (8)0.0036 (6)0.0085 (6)0.0005 (6)
C50.0321 (7)0.0438 (8)0.0324 (7)0.0057 (6)0.0074 (6)0.0000 (6)
C60.0366 (8)0.0432 (8)0.0314 (7)0.0027 (6)0.0055 (6)−0.0043 (6)
C70.0333 (7)0.0421 (8)0.0318 (7)0.0019 (6)0.0064 (6)−0.0017 (6)
C80.0355 (8)0.0409 (8)0.0360 (8)0.0017 (6)0.0069 (6)−0.0024 (6)
C90.0584 (10)0.0523 (10)0.0397 (9)−0.0096 (8)0.0084 (7)−0.0069 (7)
C100.0473 (9)0.0566 (10)0.0345 (8)0.0042 (7)0.0097 (7)0.0030 (7)
C110.0311 (7)0.0401 (8)0.0419 (8)0.0032 (6)0.0081 (6)0.0046 (6)
C120.0352 (8)0.0488 (9)0.0380 (8)0.0030 (6)0.0057 (6)0.0067 (6)
C130.0480 (10)0.0654 (11)0.0432 (9)−0.0023 (8)0.0067 (7)0.0143 (8)
C140.0476 (10)0.0582 (11)0.0622 (11)−0.0028 (8)0.0085 (8)0.0237 (9)
C150.0480 (10)0.0450 (9)0.0711 (12)−0.0029 (7)0.0105 (8)0.0066 (8)
C160.0449 (9)0.0444 (9)0.0534 (10)−0.0003 (7)0.0124 (7)−0.0015 (7)
N1—C71.332 (2)C6—H60.9300
N1—C121.381 (2)C7—C81.425 (2)
N2—C61.3775 (19)C8—C91.504 (2)
N2—C111.3899 (19)C9—H9A0.9600
N2—C71.393 (2)C9—H9B0.9600
O1—C31.2065 (19)C9—H9C0.9600
O2—C31.3283 (19)C10—H10A0.9600
O2—C21.455 (2)C10—H10B0.9600
C1—C21.480 (3)C10—H10C0.9600
C1—H1A0.9600C11—C161.389 (2)
C1—H1B0.9600C11—C121.406 (2)
C1—H1C0.9600C12—C131.401 (2)
C2—H2A0.9700C13—C141.377 (3)
C2—H2B0.9700C13—H130.9300
C3—C41.498 (2)C14—C151.401 (3)
C4—C81.377 (2)C14—H140.9300
C4—C51.446 (2)C15—C161.383 (2)
C5—C61.345 (2)C15—H150.9300
C5—C101.511 (2)C16—H160.9300
C7—N1—C12104.51 (12)C4—C8—C9124.71 (14)
C6—N2—C11130.57 (13)C7—C8—C9117.46 (13)
C6—N2—C7122.66 (13)C8—C9—H9A109.5
C11—N2—C7106.78 (12)C8—C9—H9B109.5
C3—O2—C2117.24 (13)H9A—C9—H9B109.5
C2—C1—H1A109.5C8—C9—H9C109.5
C2—C1—H1B109.5H9A—C9—H9C109.5
H1A—C1—H1B109.5H9B—C9—H9C109.5
C2—C1—H1C109.5C5—C10—H10A109.5
H1A—C1—H1C109.5C5—C10—H10B109.5
H1B—C1—H1C109.5H10A—C10—H10B109.5
O2—C2—C1107.44 (15)C5—C10—H10C109.5
O2—C2—H2A110.2H10A—C10—H10C109.5
C1—C2—H2A110.2H10B—C10—H10C109.5
O2—C2—H2B110.2C16—C11—N2131.97 (15)
C1—C2—H2B110.2C16—C11—C12123.44 (14)
H2A—C2—H2B108.5N2—C11—C12104.56 (13)
O1—C3—O2123.88 (14)N1—C12—C13129.53 (15)
O1—C3—C4124.72 (14)N1—C12—C11111.65 (13)
O2—C3—C4111.39 (13)C13—C12—C11118.81 (15)
C8—C4—C5122.15 (14)C14—C13—C12118.01 (17)
C8—C4—C3119.11 (13)C14—C13—H13121.0
C5—C4—C3118.72 (13)C12—C13—H13121.0
C6—C5—C4118.31 (14)C13—C14—C15122.22 (16)
C6—C5—C10119.97 (14)C13—C14—H14118.9
C4—C5—C10121.71 (14)C15—C14—H14118.9
C5—C6—N2120.53 (13)C16—C15—C14121.04 (17)
C5—C6—H6119.7C16—C15—H15119.5
N2—C6—H6119.7C14—C15—H15119.5
N1—C7—N2112.50 (13)C15—C16—C11116.48 (16)
N1—C7—C8129.02 (14)C15—C16—H16121.8
N2—C7—C8118.48 (13)C11—C16—H16121.8
C4—C8—C7117.80 (13)
  2 in total

1.  Benzimidazole condensed ring systems. XI. Synthesis of some substituted cycloalkyl pyrido[1,2-a]benzimidazoles with anticipated antineoplastic activity.

Authors:  E A Badawey; T Kappe
Journal:  Eur J Med Chem       Date:  1999 Jul-Aug       Impact factor: 6.514

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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