| Literature DB >> 23125788 |
Juan Manuel de Jesús Favela-Hernández1, María Del Rayo Camacho-Corona, Sylvain Bernès, Marcos Flores-Alamo.
Abstract
The title mol-ecule, C(18)H(20)O(3), is a furan-oid lignan extracted from the leaves of Larrea tridentata. The relative absolute configuration for the four chiral centers was established, showing that this compound is 4-epi-larreatricin, which has been previously reported in the literature. The mol-ecule displays noncrystallographic C(2) symmetry, with the methyl and phenol substituents alternating above and below the mean plane of the furan ring. The conformation of this ring is described by the pseudorotation phase angle P = 171.3° and the maximum out-of-plane pucker ν(m) = 37.7°. These parameters indicate that the furan ring adopts the same conformation as the ribose residues in B-DNA. The packing is dominated by inter-molecular O-H⋯O hydrogen bonds. The phenol hy-droxy groups form chains in the [110] direction and these chains inter-act via O-H⋯O(furan) contacts.Entities:
Year: 2012 PMID: 23125788 PMCID: PMC3470375 DOI: 10.1107/S1600536812039359
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H20O3 | |
| Monoclinic, | Melting point: 503 K |
| Hall symbol: P 2yb | Mo |
| Cell parameters from 1308 reflections | |
| θ = 3.5–26.0° | |
| µ = 0.08 mm−1 | |
| β = 101.243 (6)° | |
| Block, colourless | |
| 0.36 × 0.26 × 0.21 mm |
| Agilent Xcalibur (Atlas, Gemini) diffractometer | 1592 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 1107 reflections with |
| Graphite monochromator | |
| Detector resolution: 10.4685 pixels mm-1 | θmax = 26.1°, θmin = 3.5° |
| φ and ω scans | |
| Absorption correction: analytical [ | |
| 5223 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1592 reflections | (Δ/σ)max < 0.001 |
| 198 parameters | Δρmax = 0.19 e Å−3 |
| 1 restraint | Δρmin = −0.18 e Å−3 |
| 0 constraints | Absolute structure: 1004 measured Friedel pairs merged for refinement |
| O1 | 0.6576 (4) | 0.17906 (19) | 0.2077 (2) | 0.0608 (7) | |
| O2 | 0.3301 (4) | −0.29301 (19) | 0.0656 (2) | 0.0569 (6) | |
| H2 | 0.377 (5) | −0.303 (4) | −0.014 (4) | 0.085* | |
| O3 | 0.9213 (4) | 0.64265 (18) | 0.0690 (3) | 0.0741 (8) | |
| H3 | 1.056 (8) | 0.659 (4) | 0.058 (5) | 0.111* | |
| C2 | 0.5625 (5) | 0.1142 (3) | 0.3000 (3) | 0.0489 (8) | |
| H2A | 0.4333 | 0.1500 | 0.3155 | 0.059* | |
| C3 | 0.7244 (5) | 0.1130 (3) | 0.4373 (4) | 0.0588 (9) | |
| H3A | 0.8255 | 0.0553 | 0.4313 | 0.071* | |
| C4 | 0.8399 (5) | 0.2166 (3) | 0.4337 (3) | 0.0598 (9) | |
| H4A | 0.7472 | 0.2739 | 0.4551 | 0.072* | |
| C5 | 0.8532 (5) | 0.2269 (3) | 0.2820 (4) | 0.0519 (9) | |
| H5A | 0.9727 | 0.1835 | 0.2651 | 0.062* | |
| C6 | 0.6305 (7) | 0.0920 (5) | 0.5619 (4) | 0.0953 (16) | |
| H6A | 0.7419 | 0.0872 | 0.6426 | 0.143* | |
| H6B | 0.5530 | 0.0259 | 0.5498 | 0.143* | |
| H6C | 0.5362 | 0.1493 | 0.5737 | 0.143* | |
| C7 | 1.0528 (6) | 0.2277 (4) | 0.5332 (4) | 0.0903 (14) | |
| H7A | 1.1126 | 0.2967 | 0.5212 | 0.135* | |
| H7B | 1.1476 | 0.1728 | 0.5140 | 0.135* | |
| H7C | 1.0323 | 0.2207 | 0.6270 | 0.135* | |
| C8 | 0.5031 (5) | 0.0063 (2) | 0.2373 (4) | 0.0459 (8) | |
| C9 | 0.6388 (5) | −0.0506 (3) | 0.1717 (4) | 0.0564 (9) | |
| H9A | 0.7700 | −0.0214 | 0.1659 | 0.068* | |
| C10 | 0.5841 (5) | −0.1507 (3) | 0.1138 (4) | 0.0574 (9) | |
| H10A | 0.6780 | −0.1878 | 0.0700 | 0.069* | |
| C11 | 0.3913 (5) | −0.1941 (3) | 0.1217 (3) | 0.0448 (8) | |
| C12 | 0.2553 (5) | −0.1400 (3) | 0.1891 (4) | 0.0561 (9) | |
| H12A | 0.1254 | −0.1701 | 0.1963 | 0.067* | |
| C13 | 0.3120 (5) | −0.0407 (3) | 0.2462 (4) | 0.0571 (9) | |
| H13A | 0.2189 | −0.0047 | 0.2918 | 0.069* | |
| C14 | 0.8752 (5) | 0.3372 (3) | 0.2270 (3) | 0.0467 (8) | |
| C15 | 0.7158 (5) | 0.4127 (3) | 0.2230 (4) | 0.0586 (10) | |
| H15A | 0.5943 | 0.3948 | 0.2563 | 0.070* | |
| C16 | 0.7343 (5) | 0.5140 (3) | 0.1703 (4) | 0.0615 (10) | |
| H16A | 0.6250 | 0.5632 | 0.1675 | 0.074* | |
| C17 | 0.9120 (5) | 0.5420 (3) | 0.1225 (4) | 0.0526 (9) | |
| C18 | 1.0742 (5) | 0.4688 (3) | 0.1258 (4) | 0.0535 (9) | |
| H18A | 1.1962 | 0.4877 | 0.0937 | 0.064* | |
| C19 | 1.0533 (5) | 0.3675 (3) | 0.1771 (4) | 0.0516 (9) | |
| H19A | 1.1621 | 0.3182 | 0.1781 | 0.062* |
| O1 | 0.0838 (15) | 0.0455 (15) | 0.0496 (14) | −0.0226 (12) | 0.0047 (11) | 0.0036 (11) |
| O2 | 0.0778 (15) | 0.0387 (14) | 0.0569 (15) | −0.0091 (12) | 0.0199 (11) | −0.0006 (13) |
| O3 | 0.0794 (17) | 0.0361 (15) | 0.109 (2) | −0.0074 (13) | 0.0236 (16) | 0.0085 (14) |
| C2 | 0.0552 (18) | 0.037 (2) | 0.055 (2) | −0.0024 (15) | 0.0118 (15) | 0.0019 (16) |
| C3 | 0.070 (2) | 0.051 (2) | 0.055 (2) | −0.0058 (18) | 0.0119 (17) | 0.0035 (19) |
| C4 | 0.063 (2) | 0.059 (2) | 0.054 (2) | −0.0017 (18) | 0.0007 (15) | 0.006 (2) |
| C5 | 0.0527 (19) | 0.039 (2) | 0.063 (2) | −0.0002 (15) | 0.0098 (15) | −0.0003 (18) |
| C6 | 0.107 (3) | 0.109 (4) | 0.069 (3) | −0.019 (3) | 0.013 (2) | 0.015 (3) |
| C7 | 0.086 (3) | 0.097 (4) | 0.077 (3) | −0.015 (3) | −0.009 (2) | 0.002 (3) |
| C8 | 0.0547 (19) | 0.0343 (19) | 0.049 (2) | −0.0024 (14) | 0.0109 (15) | 0.0031 (15) |
| C9 | 0.0549 (19) | 0.048 (2) | 0.070 (3) | −0.0090 (16) | 0.0216 (17) | −0.006 (2) |
| C10 | 0.058 (2) | 0.053 (2) | 0.067 (2) | 0.0024 (17) | 0.0249 (17) | −0.005 (2) |
| C11 | 0.0588 (19) | 0.0306 (18) | 0.0461 (19) | −0.0029 (15) | 0.0128 (14) | 0.0048 (15) |
| C12 | 0.0563 (19) | 0.043 (2) | 0.073 (3) | −0.0117 (17) | 0.0253 (17) | −0.0023 (19) |
| C13 | 0.062 (2) | 0.048 (2) | 0.067 (3) | −0.0035 (17) | 0.0257 (17) | −0.0069 (19) |
| C14 | 0.0513 (18) | 0.038 (2) | 0.050 (2) | −0.0052 (14) | 0.0076 (14) | −0.0030 (16) |
| C15 | 0.054 (2) | 0.043 (2) | 0.081 (3) | −0.0055 (16) | 0.0191 (18) | −0.0015 (19) |
| C16 | 0.057 (2) | 0.040 (2) | 0.088 (3) | −0.0006 (16) | 0.0154 (18) | 0.003 (2) |
| C17 | 0.060 (2) | 0.0313 (19) | 0.064 (2) | −0.0072 (16) | 0.0073 (16) | −0.0056 (17) |
| C18 | 0.0538 (19) | 0.045 (2) | 0.064 (2) | −0.0055 (16) | 0.0176 (16) | −0.0077 (18) |
| C19 | 0.0507 (18) | 0.037 (2) | 0.068 (2) | 0.0000 (15) | 0.0155 (16) | −0.0045 (17) |
| O1—C2 | 1.437 (4) | C7—H7C | 0.9600 |
| O1—C5 | 1.452 (3) | C8—C9 | 1.378 (5) |
| O2—C11 | 1.378 (4) | C8—C13 | 1.379 (4) |
| O2—H2 | 0.90 (4) | C9—C10 | 1.390 (5) |
| O3—C17 | 1.368 (4) | C9—H9A | 0.9300 |
| O3—H3 | 0.92 (5) | C10—C11 | 1.368 (4) |
| C2—C8 | 1.501 (4) | C10—H10A | 0.9300 |
| C2—C3 | 1.533 (5) | C11—C12 | 1.373 (5) |
| C2—H2A | 0.9800 | C12—C13 | 1.381 (5) |
| C3—C6 | 1.489 (5) | C12—H12A | 0.9300 |
| C3—C4 | 1.496 (5) | C13—H13A | 0.9300 |
| C3—H3A | 0.9800 | C14—C19 | 1.383 (5) |
| C4—C5 | 1.513 (5) | C14—C15 | 1.387 (4) |
| C4—C7 | 1.524 (4) | C15—C16 | 1.381 (5) |
| C4—H4A | 0.9800 | C15—H15A | 0.9300 |
| C5—C14 | 1.497 (5) | C16—C17 | 1.362 (5) |
| C5—H5A | 0.9800 | C16—H16A | 0.9300 |
| C6—H6A | 0.9600 | C17—C18 | 1.382 (5) |
| C6—H6B | 0.9600 | C18—C19 | 1.379 (5) |
| C6—H6C | 0.9600 | C18—H18A | 0.9300 |
| C7—H7A | 0.9600 | C19—H19A | 0.9300 |
| C7—H7B | 0.9600 | ||
| C2—O1—C5 | 110.3 (2) | H7B—C7—H7C | 109.5 |
| C11—O2—H2 | 111 (3) | C9—C8—C13 | 117.5 (3) |
| C17—O3—H3 | 112 (3) | C9—C8—C2 | 121.5 (3) |
| O1—C2—C8 | 110.7 (3) | C13—C8—C2 | 121.0 (3) |
| O1—C2—C3 | 105.1 (2) | C8—C9—C10 | 121.5 (3) |
| C8—C2—C3 | 115.2 (3) | C8—C9—H9A | 119.2 |
| O1—C2—H2A | 108.5 | C10—C9—H9A | 119.2 |
| C8—C2—H2A | 108.5 | C11—C10—C9 | 119.6 (3) |
| C3—C2—H2A | 108.5 | C11—C10—H10A | 120.2 |
| C6—C3—C4 | 117.0 (4) | C9—C10—H10A | 120.2 |
| C6—C3—C2 | 114.2 (3) | C10—C11—C12 | 120.0 (3) |
| C4—C3—C2 | 103.0 (3) | C10—C11—O2 | 121.6 (3) |
| C6—C3—H3A | 107.4 | C12—C11—O2 | 118.4 (3) |
| C4—C3—H3A | 107.4 | C11—C12—C13 | 119.7 (3) |
| C2—C3—H3A | 107.4 | C11—C12—H12A | 120.1 |
| C3—C4—C5 | 102.7 (3) | C13—C12—H12A | 120.1 |
| C3—C4—C7 | 116.8 (3) | C8—C13—C12 | 121.7 (3) |
| C5—C4—C7 | 114.0 (3) | C8—C13—H13A | 119.2 |
| C3—C4—H4A | 107.6 | C12—C13—H13A | 119.2 |
| C5—C4—H4A | 107.6 | C19—C14—C15 | 117.4 (3) |
| C7—C4—H4A | 107.6 | C19—C14—C5 | 121.5 (3) |
| O1—C5—C14 | 109.3 (2) | C15—C14—C5 | 121.1 (3) |
| O1—C5—C4 | 104.5 (2) | C16—C15—C14 | 121.1 (3) |
| C14—C5—C4 | 117.4 (3) | C16—C15—H15A | 119.4 |
| O1—C5—H5A | 108.4 | C14—C15—H15A | 119.4 |
| C14—C5—H5A | 108.4 | C17—C16—C15 | 120.3 (3) |
| C4—C5—H5A | 108.4 | C17—C16—H16A | 119.9 |
| C3—C6—H6A | 109.5 | C15—C16—H16A | 119.9 |
| C3—C6—H6B | 109.5 | C16—C17—O3 | 118.1 (3) |
| H6A—C6—H6B | 109.5 | C16—C17—C18 | 120.0 (3) |
| C3—C6—H6C | 109.5 | O3—C17—C18 | 121.9 (3) |
| H6A—C6—H6C | 109.5 | C19—C18—C17 | 119.3 (3) |
| H6B—C6—H6C | 109.5 | C19—C18—H18A | 120.3 |
| C4—C7—H7A | 109.5 | C17—C18—H18A | 120.3 |
| C4—C7—H7B | 109.5 | C18—C19—C14 | 121.8 (3) |
| H7A—C7—H7B | 109.5 | C18—C19—H19A | 119.1 |
| C4—C7—H7C | 109.5 | C14—C19—H19A | 119.1 |
| H7A—C7—H7C | 109.5 | ||
| C5—O1—C2—C8 | −131.3 (3) | C8—C9—C10—C11 | 0.1 (5) |
| C5—O1—C2—C3 | −6.2 (3) | C9—C10—C11—C12 | −1.4 (5) |
| O1—C2—C3—C6 | 155.4 (4) | C9—C10—C11—O2 | 179.9 (3) |
| C8—C2—C3—C6 | −82.5 (4) | C10—C11—C12—C13 | 1.4 (5) |
| O1—C2—C3—C4 | 27.4 (3) | O2—C11—C12—C13 | −179.9 (3) |
| C8—C2—C3—C4 | 149.6 (3) | C9—C8—C13—C12 | −1.4 (5) |
| C6—C3—C4—C5 | −163.5 (3) | C2—C8—C13—C12 | −179.9 (3) |
| C2—C3—C4—C5 | −37.3 (3) | C11—C12—C13—C8 | 0.1 (5) |
| C6—C3—C4—C7 | 71.0 (5) | O1—C5—C14—C19 | −124.5 (3) |
| C2—C3—C4—C7 | −162.8 (3) | C4—C5—C14—C19 | 116.8 (3) |
| C2—O1—C5—C14 | −143.7 (3) | O1—C5—C14—C15 | 54.8 (4) |
| C2—O1—C5—C4 | −17.2 (3) | C4—C5—C14—C15 | −63.9 (4) |
| C3—C4—C5—O1 | 34.0 (3) | C19—C14—C15—C16 | 0.3 (5) |
| C7—C4—C5—O1 | 161.3 (3) | C5—C14—C15—C16 | −179.0 (3) |
| C3—C4—C5—C14 | 155.2 (3) | C14—C15—C16—C17 | −0.7 (6) |
| C7—C4—C5—C14 | −77.5 (4) | C15—C16—C17—O3 | 178.8 (3) |
| O1—C2—C8—C9 | 44.0 (4) | C15—C16—C17—C18 | 0.4 (6) |
| C3—C2—C8—C9 | −75.1 (4) | C16—C17—C18—C19 | 0.3 (5) |
| O1—C2—C8—C13 | −137.5 (3) | O3—C17—C18—C19 | −178.0 (3) |
| C3—C2—C8—C13 | 103.4 (4) | C17—C18—C19—C14 | −0.7 (5) |
| C13—C8—C9—C10 | 1.3 (5) | C15—C14—C19—C18 | 0.4 (5) |
| C2—C8—C9—C10 | 179.9 (3) | C5—C14—C19—C18 | 179.7 (3) |
| H··· | ||||
| O3—H3···O2i | 0.92 (5) | 1.84 (5) | 2.752 (4) | 169 (5) |
| O2—H2···O1ii | 0.90 (4) | 1.89 (4) | 2.723 (3) | 154 (3) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H3⋯O2i | 0.92 (5) | 1.84 (5) | 2.752 (4) | 169 (5) |
| O2—H2⋯O1ii | 0.90 (4) | 1.89 (4) | 2.723 (3) | 154 (3) |
Symmetry codes: (i) ; (ii) .