Literature DB >> 23125788

4,4'-[(2R*,3R*,4R*,5R*)-3,4-Dimethyl-tetra-hydro-furan-2,5-di-yl]diphenol.

Juan Manuel de Jesús Favela-Hernández1, María Del Rayo Camacho-Corona, Sylvain Bernès, Marcos Flores-Alamo.   

Abstract

The title mol-ecule, C(18)H(20)O(3), is a furan-oid lignan extracted from the leaves of Larrea tridentata. The relative absolute configuration for the four chiral centers was established, showing that this compound is 4-epi-larreatricin, which has been previously reported in the literature. The mol-ecule displays noncrystallographic C(2) symmetry, with the methyl and phenol substituents alternating above and below the mean plane of the furan ring. The conformation of this ring is described by the pseudorotation phase angle P = 171.3° and the maximum out-of-plane pucker ν(m) = 37.7°. These parameters indicate that the furan ring adopts the same conformation as the ribose residues in B-DNA. The packing is dominated by inter-molecular O-H⋯O hydrogen bonds. The phenol hy-droxy groups form chains in the [110] direction and these chains inter-act via O-H⋯O(furan) contacts.

Entities:  

Year:  2012        PMID: 23125788      PMCID: PMC3470375          DOI: 10.1107/S1600536812039359

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the extraction, synthesis, characterization and biological activity of the title compound, see: Konno et al. (1990 ▶); Moinuddin et al. (2003 ▶); Favela-Hernández et al. (2012 ▶). For the conformational analysis of sugar rings, see: Altona & Sundaralingam (1972 ▶); Sun et al. (2004 ▶). For an example of another naturally occurring furan­oid lignan, see: Soepadamo et al. (1991 ▶).

Experimental

Crystal data

C18H20O3 M = 284.34 Monoclinic, a = 6.4225 (4) Å b = 12.4973 (7) Å c = 9.8176 (7) Å β = 101.243 (6)° V = 772.88 (9) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.36 × 0.26 × 0.21 mm

Data collection

Agilent Xcalibur (Atlas, Gemini) diffractometer Absorption correction: analytical [CrysAlis PRO (Oxford Diffraction, 2009 ▶), based on expressions derived by Clark & Reid (1995 ▶)] T min = 0.980, T max = 0.985 5223 measured reflections 1592 independent reflections 1107 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.106 S = 1.05 1592 reflections 198 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: 1004 measured Friedel pairs merged for refinement Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2009 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812039359/mw2082sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812039359/mw2082Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812039359/mw2082Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H20O3F(000) = 304
Mr = 284.34Dx = 1.222 Mg m3
Monoclinic, P21Melting point: 503 K
Hall symbol: P 2ybMo Kα radiation, λ = 0.71073 Å
a = 6.4225 (4) ÅCell parameters from 1308 reflections
b = 12.4973 (7) Åθ = 3.5–26.0°
c = 9.8176 (7) ŵ = 0.08 mm1
β = 101.243 (6)°T = 298 K
V = 772.88 (9) Å3Block, colourless
Z = 20.36 × 0.26 × 0.21 mm
Agilent Xcalibur (Atlas, Gemini) diffractometer1592 independent reflections
Radiation source: Enhance (Mo) X-ray Source1107 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.041
Detector resolution: 10.4685 pixels mm-1θmax = 26.1°, θmin = 3.5°
φ and ω scansh = −7→6
Absorption correction: analytical [CrysAlis PRO (Oxford Diffraction, 2009), based on expressions derived by Clark & Reid (1995)]k = −15→15
Tmin = 0.980, Tmax = 0.985l = −12→11
5223 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0498P)2] where P = (Fo2 + 2Fc2)/3
1592 reflections(Δ/σ)max < 0.001
198 parametersΔρmax = 0.19 e Å3
1 restraintΔρmin = −0.18 e Å3
0 constraintsAbsolute structure: 1004 measured Friedel pairs merged for refinement
xyzUiso*/Ueq
O10.6576 (4)0.17906 (19)0.2077 (2)0.0608 (7)
O20.3301 (4)−0.29301 (19)0.0656 (2)0.0569 (6)
H20.377 (5)−0.303 (4)−0.014 (4)0.085*
O30.9213 (4)0.64265 (18)0.0690 (3)0.0741 (8)
H31.056 (8)0.659 (4)0.058 (5)0.111*
C20.5625 (5)0.1142 (3)0.3000 (3)0.0489 (8)
H2A0.43330.15000.31550.059*
C30.7244 (5)0.1130 (3)0.4373 (4)0.0588 (9)
H3A0.82550.05530.43130.071*
C40.8399 (5)0.2166 (3)0.4337 (3)0.0598 (9)
H4A0.74720.27390.45510.072*
C50.8532 (5)0.2269 (3)0.2820 (4)0.0519 (9)
H5A0.97270.18350.26510.062*
C60.6305 (7)0.0920 (5)0.5619 (4)0.0953 (16)
H6A0.74190.08720.64260.143*
H6B0.55300.02590.54980.143*
H6C0.53620.14930.57370.143*
C71.0528 (6)0.2277 (4)0.5332 (4)0.0903 (14)
H7A1.11260.29670.52120.135*
H7B1.14760.17280.51400.135*
H7C1.03230.22070.62700.135*
C80.5031 (5)0.0063 (2)0.2373 (4)0.0459 (8)
C90.6388 (5)−0.0506 (3)0.1717 (4)0.0564 (9)
H9A0.7700−0.02140.16590.068*
C100.5841 (5)−0.1507 (3)0.1138 (4)0.0574 (9)
H10A0.6780−0.18780.07000.069*
C110.3913 (5)−0.1941 (3)0.1217 (3)0.0448 (8)
C120.2553 (5)−0.1400 (3)0.1891 (4)0.0561 (9)
H12A0.1254−0.17010.19630.067*
C130.3120 (5)−0.0407 (3)0.2462 (4)0.0571 (9)
H13A0.2189−0.00470.29180.069*
C140.8752 (5)0.3372 (3)0.2270 (3)0.0467 (8)
C150.7158 (5)0.4127 (3)0.2230 (4)0.0586 (10)
H15A0.59430.39480.25630.070*
C160.7343 (5)0.5140 (3)0.1703 (4)0.0615 (10)
H16A0.62500.56320.16750.074*
C170.9120 (5)0.5420 (3)0.1225 (4)0.0526 (9)
C181.0742 (5)0.4688 (3)0.1258 (4)0.0535 (9)
H18A1.19620.48770.09370.064*
C191.0533 (5)0.3675 (3)0.1771 (4)0.0516 (9)
H19A1.16210.31820.17810.062*
U11U22U33U12U13U23
O10.0838 (15)0.0455 (15)0.0496 (14)−0.0226 (12)0.0047 (11)0.0036 (11)
O20.0778 (15)0.0387 (14)0.0569 (15)−0.0091 (12)0.0199 (11)−0.0006 (13)
O30.0794 (17)0.0361 (15)0.109 (2)−0.0074 (13)0.0236 (16)0.0085 (14)
C20.0552 (18)0.037 (2)0.055 (2)−0.0024 (15)0.0118 (15)0.0019 (16)
C30.070 (2)0.051 (2)0.055 (2)−0.0058 (18)0.0119 (17)0.0035 (19)
C40.063 (2)0.059 (2)0.054 (2)−0.0017 (18)0.0007 (15)0.006 (2)
C50.0527 (19)0.039 (2)0.063 (2)−0.0002 (15)0.0098 (15)−0.0003 (18)
C60.107 (3)0.109 (4)0.069 (3)−0.019 (3)0.013 (2)0.015 (3)
C70.086 (3)0.097 (4)0.077 (3)−0.015 (3)−0.009 (2)0.002 (3)
C80.0547 (19)0.0343 (19)0.049 (2)−0.0024 (14)0.0109 (15)0.0031 (15)
C90.0549 (19)0.048 (2)0.070 (3)−0.0090 (16)0.0216 (17)−0.006 (2)
C100.058 (2)0.053 (2)0.067 (2)0.0024 (17)0.0249 (17)−0.005 (2)
C110.0588 (19)0.0306 (18)0.0461 (19)−0.0029 (15)0.0128 (14)0.0048 (15)
C120.0563 (19)0.043 (2)0.073 (3)−0.0117 (17)0.0253 (17)−0.0023 (19)
C130.062 (2)0.048 (2)0.067 (3)−0.0035 (17)0.0257 (17)−0.0069 (19)
C140.0513 (18)0.038 (2)0.050 (2)−0.0052 (14)0.0076 (14)−0.0030 (16)
C150.054 (2)0.043 (2)0.081 (3)−0.0055 (16)0.0191 (18)−0.0015 (19)
C160.057 (2)0.040 (2)0.088 (3)−0.0006 (16)0.0154 (18)0.003 (2)
C170.060 (2)0.0313 (19)0.064 (2)−0.0072 (16)0.0073 (16)−0.0056 (17)
C180.0538 (19)0.045 (2)0.064 (2)−0.0055 (16)0.0176 (16)−0.0077 (18)
C190.0507 (18)0.037 (2)0.068 (2)0.0000 (15)0.0155 (16)−0.0045 (17)
O1—C21.437 (4)C7—H7C0.9600
O1—C51.452 (3)C8—C91.378 (5)
O2—C111.378 (4)C8—C131.379 (4)
O2—H20.90 (4)C9—C101.390 (5)
O3—C171.368 (4)C9—H9A0.9300
O3—H30.92 (5)C10—C111.368 (4)
C2—C81.501 (4)C10—H10A0.9300
C2—C31.533 (5)C11—C121.373 (5)
C2—H2A0.9800C12—C131.381 (5)
C3—C61.489 (5)C12—H12A0.9300
C3—C41.496 (5)C13—H13A0.9300
C3—H3A0.9800C14—C191.383 (5)
C4—C51.513 (5)C14—C151.387 (4)
C4—C71.524 (4)C15—C161.381 (5)
C4—H4A0.9800C15—H15A0.9300
C5—C141.497 (5)C16—C171.362 (5)
C5—H5A0.9800C16—H16A0.9300
C6—H6A0.9600C17—C181.382 (5)
C6—H6B0.9600C18—C191.379 (5)
C6—H6C0.9600C18—H18A0.9300
C7—H7A0.9600C19—H19A0.9300
C7—H7B0.9600
C2—O1—C5110.3 (2)H7B—C7—H7C109.5
C11—O2—H2111 (3)C9—C8—C13117.5 (3)
C17—O3—H3112 (3)C9—C8—C2121.5 (3)
O1—C2—C8110.7 (3)C13—C8—C2121.0 (3)
O1—C2—C3105.1 (2)C8—C9—C10121.5 (3)
C8—C2—C3115.2 (3)C8—C9—H9A119.2
O1—C2—H2A108.5C10—C9—H9A119.2
C8—C2—H2A108.5C11—C10—C9119.6 (3)
C3—C2—H2A108.5C11—C10—H10A120.2
C6—C3—C4117.0 (4)C9—C10—H10A120.2
C6—C3—C2114.2 (3)C10—C11—C12120.0 (3)
C4—C3—C2103.0 (3)C10—C11—O2121.6 (3)
C6—C3—H3A107.4C12—C11—O2118.4 (3)
C4—C3—H3A107.4C11—C12—C13119.7 (3)
C2—C3—H3A107.4C11—C12—H12A120.1
C3—C4—C5102.7 (3)C13—C12—H12A120.1
C3—C4—C7116.8 (3)C8—C13—C12121.7 (3)
C5—C4—C7114.0 (3)C8—C13—H13A119.2
C3—C4—H4A107.6C12—C13—H13A119.2
C5—C4—H4A107.6C19—C14—C15117.4 (3)
C7—C4—H4A107.6C19—C14—C5121.5 (3)
O1—C5—C14109.3 (2)C15—C14—C5121.1 (3)
O1—C5—C4104.5 (2)C16—C15—C14121.1 (3)
C14—C5—C4117.4 (3)C16—C15—H15A119.4
O1—C5—H5A108.4C14—C15—H15A119.4
C14—C5—H5A108.4C17—C16—C15120.3 (3)
C4—C5—H5A108.4C17—C16—H16A119.9
C3—C6—H6A109.5C15—C16—H16A119.9
C3—C6—H6B109.5C16—C17—O3118.1 (3)
H6A—C6—H6B109.5C16—C17—C18120.0 (3)
C3—C6—H6C109.5O3—C17—C18121.9 (3)
H6A—C6—H6C109.5C19—C18—C17119.3 (3)
H6B—C6—H6C109.5C19—C18—H18A120.3
C4—C7—H7A109.5C17—C18—H18A120.3
C4—C7—H7B109.5C18—C19—C14121.8 (3)
H7A—C7—H7B109.5C18—C19—H19A119.1
C4—C7—H7C109.5C14—C19—H19A119.1
H7A—C7—H7C109.5
C5—O1—C2—C8−131.3 (3)C8—C9—C10—C110.1 (5)
C5—O1—C2—C3−6.2 (3)C9—C10—C11—C12−1.4 (5)
O1—C2—C3—C6155.4 (4)C9—C10—C11—O2179.9 (3)
C8—C2—C3—C6−82.5 (4)C10—C11—C12—C131.4 (5)
O1—C2—C3—C427.4 (3)O2—C11—C12—C13−179.9 (3)
C8—C2—C3—C4149.6 (3)C9—C8—C13—C12−1.4 (5)
C6—C3—C4—C5−163.5 (3)C2—C8—C13—C12−179.9 (3)
C2—C3—C4—C5−37.3 (3)C11—C12—C13—C80.1 (5)
C6—C3—C4—C771.0 (5)O1—C5—C14—C19−124.5 (3)
C2—C3—C4—C7−162.8 (3)C4—C5—C14—C19116.8 (3)
C2—O1—C5—C14−143.7 (3)O1—C5—C14—C1554.8 (4)
C2—O1—C5—C4−17.2 (3)C4—C5—C14—C15−63.9 (4)
C3—C4—C5—O134.0 (3)C19—C14—C15—C160.3 (5)
C7—C4—C5—O1161.3 (3)C5—C14—C15—C16−179.0 (3)
C3—C4—C5—C14155.2 (3)C14—C15—C16—C17−0.7 (6)
C7—C4—C5—C14−77.5 (4)C15—C16—C17—O3178.8 (3)
O1—C2—C8—C944.0 (4)C15—C16—C17—C180.4 (6)
C3—C2—C8—C9−75.1 (4)C16—C17—C18—C190.3 (5)
O1—C2—C8—C13−137.5 (3)O3—C17—C18—C19−178.0 (3)
C3—C2—C8—C13103.4 (4)C17—C18—C19—C14−0.7 (5)
C13—C8—C9—C101.3 (5)C15—C14—C19—C180.4 (5)
C2—C8—C9—C10179.9 (3)C5—C14—C19—C18179.7 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3···O2i0.92 (5)1.84 (5)2.752 (4)169 (5)
O2—H2···O1ii0.90 (4)1.89 (4)2.723 (3)154 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3⋯O2i 0.92 (5)1.84 (5)2.752 (4)169 (5)
O2—H2⋯O1ii 0.90 (4)1.89 (4)2.723 (3)154 (3)

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and chiral HPLC analysis of the dibenzyltetrahydrofuran lignans, larreatricins, 8'-epi-larreatricins, 3,3'-didemethoxyverrucosins and meso-3,3'-didemethoxynectandrin B in the creosote bush (Larrea tridentata): evidence for regiospecific control of coupling.

Authors:  Syed G A Moinuddin; Shojiro Hishiyama; Man-Ho Cho; Laurence B Davin; Norman G Lewis
Journal:  Org Biomol Chem       Date:  2003-07-07       Impact factor: 3.876

3.  Conformational analysis of the sugar ring in nucleosides and nucleotides. A new description using the concept of pseudorotation.

Authors:  C Altona; M Sundaralingam
Journal:  J Am Chem Soc       Date:  1972-11-15       Impact factor: 15.419

4.  Furanoid lignans from Larrea tridentata.

Authors:  C Konno; Z Z Lu; H Z Xue; C A Erdelmeier; D Meksuriyen; C T Che; G A Cordell; D D Soejarto; D P Waller; H H Fong
Journal:  J Nat Prod       Date:  1990 Mar-Apr       Impact factor: 4.050

5.  PROSIT: pseudo-rotational online service and interactive tool, applied to a conformational survey of nucleosides and nucleotides.

Authors:  Guangyu Sun; Johannes H Voigt; Igor V Filippov; Victor E Marquez; Marc C Nicklaus
Journal:  J Chem Inf Comput Sci       Date:  2004 Sep-Oct

6.  (-)-Grandisin form Cryptocarya crassinervia.

Authors:  J M Saad; E Soepadamo; X P Fang; J L McLaughlin; P E Fanwick
Journal:  J Nat Prod       Date:  1991 Nov-Dec       Impact factor: 4.050

  6 in total

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