Literature DB >> 23125763

(E)-N'-(4-Meth-oxy-benzyl-idene)-2-(2-methyl-4-nitro-1H-imidazol-1-yl)acetohydrazide.

Hoong-Kun Fun1, Tze Shyang Chia, Priya V Frank, Mahesha Poojary, Balakrishna Kalluraya.   

Abstract

In the title compound, C(14)H(15)N(5)O(4), the central -C=N-N-C(=O)-C- bridge is nearly planar [maximum deviation = 0.037 (1) Å] and forms dihedral angles of 7.37 (9) and 73.33 (5)°, respectively, with the benzene and imidazole rings. The dihedral angle between the benzene and imidazole rings is 66.08 (9)°. The meth-oxy and nitro groups are nearly coplanar with the benzene and imidazole rings, respectively, with a C-O-C-C torsion angle of 5.9 (2)° and an O-N-C-C angle of -0.2 (2)°. In the crystal, mol-ecules are linked by a pair of N-H⋯O hydrogen bonds with an R(2) (2)(8) ring motif, forming an inversion dimer. The dimers are further inter-connected by C-H⋯O hydrogen bonds into a sheet parallel to the (111) plane. A C-H⋯π inter-action is also observed between the sheets.

Entities:  

Year:  2012        PMID: 23125763      PMCID: PMC3470350          DOI: 10.1107/S1600536812039621

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications and biological activities of imidazole derivatives, see: Frank & Kalluraya (2005 ▶); Dobler (2003 ▶); Gauthier & Duceppe (1984 ▶); Khan & Nandan (1997 ▶); Khabnadideh et al. (2003 ▶). For the stability of the temperature controller used for data collection, see: Cosier & Glazer (1986 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C14H15N5O4 M = 317.31 Triclinic, a = 4.3366 (1) Å b = 12.9773 (3) Å c = 13.2138 (3) Å α = 84.919 (2)° β = 87.353 (2)° γ = 84.611 (1)° V = 736.90 (3) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.51 × 0.19 × 0.11 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.947, T max = 0.988 15663 measured reflections 4303 independent reflections 3252 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.131 S = 1.03 4303 reflections 214 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812039621/is5195sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812039621/is5195Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812039621/is5195Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H15N5O4Z = 2
Mr = 317.31F(000) = 332
Triclinic, P1Dx = 1.430 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.3366 (1) ÅCell parameters from 5229 reflections
b = 12.9773 (3) Åθ = 2.3–30.0°
c = 13.2138 (3) ŵ = 0.11 mm1
α = 84.919 (2)°T = 100 K
β = 87.353 (2)°Plate, yellow
γ = 84.611 (1)°0.51 × 0.19 × 0.11 mm
V = 736.90 (3) Å3
Bruker SMART APEXII CCD area-detector diffractometer4303 independent reflections
Radiation source: fine-focus sealed tube3252 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.035
φ and ω scansθmax = 30.1°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −6→6
Tmin = 0.947, Tmax = 0.988k = −18→18
15663 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0518P)2 + 0.496P] where P = (Fo2 + 2Fc2)/3
4303 reflections(Δ/σ)max < 0.001
214 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.31 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.4105 (3)0.76565 (9)1.00477 (9)0.0228 (3)
O21.0816 (3)0.88398 (8)0.42690 (8)0.0168 (2)
O31.4713 (3)0.47331 (9)0.20227 (9)0.0237 (3)
O41.5848 (3)0.44149 (9)0.36131 (9)0.0256 (3)
N10.5223 (3)0.85992 (9)0.62488 (10)0.0157 (3)
N20.7370 (3)0.90552 (10)0.55866 (10)0.0151 (3)
N30.9336 (3)0.68443 (9)0.40406 (10)0.0156 (3)
N41.0435 (3)0.63333 (9)0.24863 (10)0.0164 (3)
N51.4374 (3)0.49076 (9)0.29156 (10)0.0175 (3)
C1−0.4567 (4)0.65710 (13)1.02022 (13)0.0243 (4)
H1A−0.60640.64581.07710.036*
H1B−0.25900.61711.03570.036*
H1C−0.53610.63440.95840.036*
C2−0.2144 (4)0.79626 (12)0.92693 (12)0.0178 (3)
C3−0.0763 (4)0.73140 (12)0.85563 (12)0.0181 (3)
H3A−0.11780.66050.85930.022*
C40.1213 (4)0.77065 (11)0.77954 (12)0.0164 (3)
H4A0.21390.72610.73110.020*
C50.1872 (4)0.87453 (11)0.77251 (11)0.0149 (3)
C60.0467 (4)0.93826 (12)0.84475 (12)0.0193 (3)
H6A0.08931.00900.84150.023*
C7−0.1527 (4)0.90054 (12)0.92063 (12)0.0204 (3)
H7A−0.24770.94530.96850.025*
C80.4071 (4)0.91518 (11)0.69559 (12)0.0155 (3)
H8A0.46580.98360.69790.019*
C90.8830 (4)0.84969 (11)0.48733 (11)0.0141 (3)
C100.7805 (4)0.74033 (11)0.48597 (12)0.0172 (3)
H10A0.82650.70060.55180.021*
H10B0.55340.74520.47820.021*
C111.1547 (4)0.60235 (11)0.41596 (12)0.0162 (3)
H11A1.24470.57220.47710.019*
C121.2159 (4)0.57381 (11)0.31963 (12)0.0156 (3)
C130.8741 (4)0.70062 (11)0.30221 (12)0.0156 (3)
C140.6539 (4)0.78659 (12)0.26004 (13)0.0197 (3)
H14A0.62000.77730.18870.030*
H14B0.74030.85310.26450.030*
H14C0.45630.78610.29910.030*
H1N20.792 (5)0.9681 (18)0.5660 (16)0.031 (6)*
U11U22U33U12U13U23
O10.0275 (7)0.0223 (6)0.0192 (6)−0.0081 (5)0.0062 (5)−0.0019 (4)
O20.0186 (6)0.0126 (5)0.0197 (5)−0.0047 (4)0.0036 (4)−0.0028 (4)
O30.0346 (7)0.0162 (5)0.0199 (6)0.0018 (5)0.0016 (5)−0.0055 (4)
O40.0341 (7)0.0176 (5)0.0242 (6)0.0067 (5)−0.0071 (5)−0.0021 (5)
N10.0165 (6)0.0127 (5)0.0178 (6)−0.0019 (5)0.0009 (5)−0.0012 (5)
N20.0173 (7)0.0104 (5)0.0181 (6)−0.0040 (5)0.0031 (5)−0.0033 (5)
N30.0200 (7)0.0099 (5)0.0174 (6)−0.0032 (5)0.0016 (5)−0.0034 (4)
N40.0195 (7)0.0113 (5)0.0185 (6)−0.0022 (5)0.0003 (5)−0.0023 (5)
N50.0228 (7)0.0096 (5)0.0204 (7)−0.0017 (5)−0.0009 (5)−0.0025 (5)
C10.0275 (9)0.0232 (8)0.0224 (8)−0.0092 (7)0.0021 (7)0.0024 (6)
C20.0183 (8)0.0197 (7)0.0155 (7)−0.0027 (6)0.0003 (6)−0.0007 (6)
C30.0219 (8)0.0135 (6)0.0191 (7)−0.0031 (6)−0.0011 (6)−0.0009 (5)
C40.0175 (8)0.0140 (6)0.0179 (7)0.0000 (6)0.0002 (6)−0.0034 (5)
C50.0151 (7)0.0128 (6)0.0168 (7)−0.0007 (6)−0.0005 (6)−0.0020 (5)
C60.0232 (8)0.0131 (6)0.0221 (8)−0.0024 (6)0.0008 (7)−0.0045 (6)
C70.0231 (8)0.0182 (7)0.0204 (8)−0.0022 (6)0.0040 (7)−0.0065 (6)
C80.0173 (7)0.0112 (6)0.0182 (7)−0.0009 (6)−0.0017 (6)−0.0021 (5)
C90.0153 (7)0.0111 (6)0.0163 (7)−0.0014 (5)−0.0019 (6)−0.0022 (5)
C100.0223 (8)0.0128 (6)0.0173 (7)−0.0046 (6)0.0050 (6)−0.0047 (5)
C110.0205 (8)0.0101 (6)0.0185 (7)−0.0034 (6)−0.0003 (6)−0.0015 (5)
C120.0178 (8)0.0102 (6)0.0190 (7)−0.0023 (6)0.0009 (6)−0.0017 (5)
C130.0188 (8)0.0096 (6)0.0191 (7)−0.0035 (6)0.0002 (6)−0.0029 (5)
C140.0229 (8)0.0130 (6)0.0229 (8)0.0016 (6)−0.0023 (7)−0.0025 (6)
O1—C21.3599 (19)C3—C41.384 (2)
O1—C11.437 (2)C3—H3A0.9500
O2—C91.2340 (18)C4—C51.398 (2)
O3—N51.2206 (17)C4—H4A0.9500
O4—N51.2410 (18)C5—C61.399 (2)
N1—C81.2825 (19)C5—C81.460 (2)
N1—N21.3853 (17)C6—C71.380 (2)
N2—C91.3394 (19)C6—H6A0.9500
N2—H1N20.88 (2)C7—H7A0.9500
N3—C111.368 (2)C8—H8A0.9500
N3—C131.376 (2)C9—C101.5284 (19)
N3—C101.4565 (19)C10—H10A0.9900
N4—C131.3208 (19)C10—H10B0.9900
N4—C121.365 (2)C11—C121.364 (2)
N5—C121.4371 (19)C11—H11A0.9500
C1—H1A0.9800C13—C141.485 (2)
C1—H1B0.9800C14—H14A0.9800
C1—H1C0.9800C14—H14B0.9800
C2—C31.396 (2)C14—H14C0.9800
C2—C71.399 (2)
C2—O1—C1117.64 (13)C5—C6—H6A119.3
C8—N1—N2115.67 (12)C6—C7—C2119.82 (14)
C9—N2—N1118.95 (12)C6—C7—H7A120.1
C9—N2—H1N2119.3 (14)C2—C7—H7A120.1
N1—N2—H1N2121.5 (14)N1—C8—C5121.01 (13)
C11—N3—C13107.62 (12)N1—C8—H8A119.5
C11—N3—C10125.49 (13)C5—C8—H8A119.5
C13—N3—C10126.83 (13)O2—C9—N2122.86 (13)
C13—N4—C12103.74 (13)O2—C9—C10122.67 (13)
O3—N5—O4124.20 (14)N2—C9—C10114.47 (13)
O3—N5—C12119.08 (13)N3—C10—C9112.56 (12)
O4—N5—C12116.72 (13)N3—C10—H10A109.1
O1—C1—H1A109.5C9—C10—H10A109.1
O1—C1—H1B109.5N3—C10—H10B109.1
H1A—C1—H1B109.5C9—C10—H10B109.1
O1—C1—H1C109.5H10A—C10—H10B107.8
H1A—C1—H1C109.5C12—C11—N3103.93 (14)
H1B—C1—H1C109.5C12—C11—H11A128.0
O1—C2—C3124.58 (14)N3—C11—H11A128.0
O1—C2—C7115.76 (14)C11—C12—N4113.11 (14)
C3—C2—C7119.66 (14)C11—C12—N5125.50 (14)
C4—C3—C2119.79 (14)N4—C12—N5121.40 (13)
C4—C3—H3A120.1N4—C13—N3111.59 (14)
C2—C3—H3A120.1N4—C13—C14125.55 (14)
C3—C4—C5121.31 (14)N3—C13—C14122.82 (13)
C3—C4—H4A119.3C13—C14—H14A109.5
C5—C4—H4A119.3C13—C14—H14B109.5
C4—C5—C6118.03 (14)H14A—C14—H14B109.5
C4—C5—C8121.61 (13)C13—C14—H14C109.5
C6—C5—C8120.30 (13)H14A—C14—H14C109.5
C7—C6—C5121.39 (14)H14B—C14—H14C109.5
C7—C6—H6A119.3
C8—N1—N2—C9175.35 (14)C13—N3—C10—C9−74.30 (19)
C1—O1—C2—C35.9 (2)O2—C9—C10—N3−2.2 (2)
C1—O1—C2—C7−174.01 (15)N2—C9—C10—N3177.07 (14)
O1—C2—C3—C4−179.73 (15)C13—N3—C11—C120.07 (16)
C7—C2—C3—C40.2 (3)C10—N3—C11—C12177.30 (13)
C2—C3—C4—C50.2 (2)N3—C11—C12—N4−0.37 (17)
C3—C4—C5—C6−0.2 (2)N3—C11—C12—N5179.33 (13)
C3—C4—C5—C8176.91 (15)C13—N4—C12—C110.52 (17)
C4—C5—C6—C7−0.3 (2)C13—N4—C12—N5−179.19 (13)
C8—C5—C6—C7−177.45 (16)O3—N5—C12—C11−179.70 (15)
C5—C6—C7—C20.8 (3)O4—N5—C12—C11−0.2 (2)
O1—C2—C7—C6179.25 (16)O3—N5—C12—N40.0 (2)
C3—C2—C7—C6−0.7 (3)O4—N5—C12—N4179.49 (14)
N2—N1—C8—C5−177.68 (14)C12—N4—C13—N3−0.46 (16)
C4—C5—C8—N17.6 (2)C12—N4—C13—C14177.23 (15)
C6—C5—C8—N1−175.37 (15)C11—N3—C13—N40.26 (17)
N1—N2—C9—O2−178.50 (14)C10—N3—C13—N4−176.93 (13)
N1—N2—C9—C102.3 (2)C11—N3—C13—C14−177.51 (14)
C11—N3—C10—C9108.99 (16)C10—N3—C13—C145.3 (2)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O2i0.88 (2)2.06 (2)2.9372 (17)176 (2)
C11—H11A···O4ii0.952.283.186 (2)160
C14—H14A···O1iii0.982.463.434 (2)173
C14—H14C···Cg1iv0.982.743.4747 (18)133
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the N3/C11/C12/N4/C13 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H1N2⋯O2i 0.88 (2)2.06 (2)2.9372 (17)176 (2)
C11—H11A⋯O4ii 0.952.283.186 (2)160
C14—H14A⋯O1iii 0.982.463.434 (2)173
C14—H14CCg1iv 0.982.743.4747 (18)133

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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