Literature DB >> 23125747

3-Ethyl-sulfinyl-2-(3-fluoro-phen-yl)-5-iodo-7-methyl-1-benzofuran.

Hong Dae Choi1, Pil Ja Seo, Uk Lee.   

Abstract

In the title compound, C(17)H(14)FIO(2)S, the 3-fluoro-phenyl ring makes a dihedral angle of 14.56 (5)° with the mean plane [r.m.s. deviation = 0.012 (1) Å] of the benzofuran fragment. In the crystal, mol-ecules are linked via pairs of I⋯O contacts [3.038 (2) Å], forming inversion dimers. In the 3-fluoro-phenyl ring, the F atom is disordered over two positions, with site-occupancy factors of 0.747 (3) and 0.253 (3).

Entities:  

Year:  2012        PMID: 23125747      PMCID: PMC3470334          DOI: 10.1107/S1600536812039463

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information and the crystal structures of related compounds, see: Choi et al. (2010 ▶, 2011 ▶). For a review of halogen bonding, see: Politzer et al. (2007 ▶).

Experimental

Crystal data

C17H14FIO2S M = 428.24 Triclinic, a = 7.3338 (2) Å b = 10.3610 (2) Å c = 10.9799 (2) Å α = 104.644 (1)° β = 92.926 (1)° γ = 102.035 (1)° V = 784.71 (3) Å3 Z = 2 Mo Kα radiation μ = 2.19 mm−1 T = 173 K 0.35 × 0.29 × 0.24 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.556, T max = 0.746 14623 measured reflections 3918 independent reflections 3731 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.022 wR(F 2) = 0.056 S = 1.08 3918 reflections 211 parameters 164 restraints H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.65 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812039463/aa2071sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812039463/aa2071Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812039463/aa2071Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H14FIO2SZ = 2
Mr = 428.24F(000) = 420
Triclinic, P1Dx = 1.812 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3338 (2) ÅCell parameters from 9894 reflections
b = 10.3610 (2) Åθ = 2.4–28.4°
c = 10.9799 (2) ŵ = 2.19 mm1
α = 104.644 (1)°T = 173 K
β = 92.926 (1)°Block, colourless
γ = 102.035 (1)°0.35 × 0.29 × 0.24 mm
V = 784.71 (3) Å3
Bruker SMART APEXII CCD diffractometer3918 independent reflections
Radiation source: rotating anode3731 reflections with I > 2σ(I)
Graphite multilayer monochromatorRint = 0.040
Detector resolution: 10.0 pixels mm-1θmax = 28.4°, θmin = 1.9°
φ and ω scansh = −9→9
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −13→13
Tmin = 0.556, Tmax = 0.746l = −14→14
14623 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.022Hydrogen site location: difference Fourier map
wR(F2) = 0.056H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0255P)2 + 0.2925P] where P = (Fo2 + 2Fc2)/3
3918 reflections(Δ/σ)max = 0.001
211 parametersΔρmax = 0.38 e Å3
164 restraintsΔρmin = −0.65 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
I1−0.011910 (18)0.247792 (12)−0.066263 (10)0.03114 (5)
S10.27413 (7)0.74595 (4)0.42237 (4)0.02679 (10)
O10.21349 (18)0.39126 (13)0.50876 (12)0.0258 (3)
O20.1125 (2)0.75365 (15)0.33857 (14)0.0336 (3)
C10.2420 (3)0.57482 (18)0.43099 (17)0.0249 (3)
C20.1699 (3)0.45433 (17)0.32762 (17)0.0238 (3)
C30.1203 (3)0.42768 (18)0.19759 (17)0.0254 (3)
H30.13010.49960.15740.030*
C40.0563 (3)0.29164 (18)0.13005 (17)0.0259 (3)
C50.0365 (3)0.18389 (19)0.18758 (19)0.0280 (4)
H5−0.01230.09250.13740.034*
C60.0869 (3)0.20809 (18)0.31681 (18)0.0266 (4)
C70.1532 (3)0.34487 (18)0.38160 (17)0.0238 (3)
C80.2659 (2)0.53213 (18)0.53774 (17)0.0244 (3)
C90.0763 (3)0.0950 (2)0.3810 (2)0.0353 (4)
H9A0.20310.08400.40080.053*
H9B0.00120.00920.32460.053*
H9C0.01770.11800.45950.053*
C100.3342 (3)0.5987 (2)0.67072 (17)0.0269 (4)
C110.2991 (3)0.5240 (2)0.76036 (19)0.0317 (4)
H110.22850.43180.73530.038*
C12A0.3681 (3)0.5856 (3)0.8849 (2)0.0415 (5)0.747 (3)
H12A0.34590.53380.94490.050*0.747 (3)
C12B0.3681 (3)0.5856 (3)0.8849 (2)0.0415 (5)0.253 (3)
F1B0.3501 (9)0.5380 (6)0.9793 (5)0.0474 (16)0.253 (3)
C130.4679 (3)0.7192 (3)0.9258 (2)0.0439 (5)
H130.51450.76031.01230.053*
C14A0.4974 (3)0.7906 (2)0.8370 (2)0.0416 (5)0.747 (3)
F1A0.5917 (3)0.91806 (18)0.87743 (19)0.0506 (6)0.747 (3)
C14B0.4974 (3)0.7906 (2)0.8370 (2)0.0416 (5)0.253 (3)
H14B0.56410.88380.86390.050*0.253 (3)
C150.4356 (3)0.7346 (2)0.7108 (2)0.0341 (4)
H150.46130.78740.65190.041*
C160.4722 (3)0.7479 (2)0.3304 (2)0.0340 (4)
H16A0.57800.72950.37770.041*
H16B0.43720.67500.24960.041*
C170.5320 (4)0.8859 (2)0.3032 (2)0.0437 (5)
H17A0.42940.90180.25240.066*
H17B0.64240.88720.25650.066*
H17C0.56310.95820.38330.066*
U11U22U33U12U13U23
I10.03983 (9)0.02785 (8)0.02227 (8)0.00625 (6)0.00093 (5)0.00227 (5)
S10.0375 (2)0.01877 (19)0.0227 (2)0.00580 (17)0.00145 (18)0.00388 (16)
O10.0304 (6)0.0231 (6)0.0247 (6)0.0058 (5)0.0021 (5)0.0080 (5)
O20.0386 (8)0.0319 (7)0.0349 (7)0.0133 (6)0.0028 (6)0.0134 (6)
C10.0292 (9)0.0204 (8)0.0238 (8)0.0045 (7)0.0021 (7)0.0049 (6)
C20.0263 (8)0.0201 (7)0.0252 (8)0.0060 (7)0.0034 (7)0.0060 (6)
C30.0303 (9)0.0221 (8)0.0241 (8)0.0061 (7)0.0019 (7)0.0069 (7)
C40.0295 (9)0.0251 (8)0.0214 (8)0.0065 (7)0.0017 (7)0.0034 (7)
C50.0313 (9)0.0209 (8)0.0294 (9)0.0042 (7)0.0035 (7)0.0038 (7)
C60.0299 (9)0.0211 (8)0.0300 (9)0.0060 (7)0.0054 (7)0.0083 (7)
C70.0254 (8)0.0241 (8)0.0228 (8)0.0068 (7)0.0029 (7)0.0071 (7)
C80.0240 (8)0.0235 (8)0.0257 (8)0.0052 (7)0.0030 (7)0.0066 (7)
C90.0505 (12)0.0216 (8)0.0347 (10)0.0063 (8)0.0062 (9)0.0107 (8)
C100.0244 (8)0.0345 (9)0.0224 (8)0.0097 (7)0.0020 (7)0.0062 (7)
C110.0277 (9)0.0411 (11)0.0279 (9)0.0099 (8)0.0040 (8)0.0104 (8)
C12A0.0369 (11)0.0653 (15)0.0250 (10)0.0162 (11)0.0023 (8)0.0138 (10)
C12B0.0369 (11)0.0653 (15)0.0250 (10)0.0162 (11)0.0023 (8)0.0138 (10)
F1B0.060 (3)0.054 (3)0.032 (3)0.006 (3)0.003 (2)0.025 (2)
C130.0360 (11)0.0660 (15)0.0231 (10)0.0139 (11)−0.0038 (9)0.0001 (9)
C14A0.0360 (11)0.0438 (12)0.0362 (12)0.0075 (10)−0.0033 (9)−0.0025 (9)
F1A0.0606 (13)0.0339 (9)0.0430 (11)−0.0028 (9)−0.0106 (9)−0.0012 (8)
C14B0.0360 (11)0.0438 (12)0.0362 (12)0.0075 (10)−0.0033 (9)−0.0025 (9)
C150.0345 (10)0.0348 (10)0.0290 (10)0.0050 (8)−0.0013 (8)0.0051 (8)
C160.0350 (10)0.0298 (9)0.0362 (11)0.0048 (8)0.0048 (9)0.0091 (8)
C170.0499 (13)0.0345 (11)0.0424 (12)−0.0039 (10)0.0055 (10)0.0134 (9)
I1—C42.0982 (18)C9—H9B0.9800
I1—O2i3.0384 (15)C9—H9C0.9800
S1—O21.4908 (15)C10—C151.396 (3)
S1—C11.7666 (18)C10—C111.401 (3)
S1—C161.811 (2)C11—C12A1.373 (3)
O1—C71.373 (2)C11—H110.9500
O1—C81.378 (2)C12A—C131.372 (4)
C1—C81.369 (2)C12A—H12A0.9500
C1—C21.440 (3)C13—C14A1.366 (4)
C2—C71.393 (2)C13—H130.9500
C2—C31.397 (3)C14A—F1A1.308 (3)
C3—C41.385 (2)C14A—C151.371 (3)
C3—H30.9500C15—H150.9500
C4—C51.402 (3)C16—C171.515 (3)
C5—C61.393 (3)C16—H16A0.9900
C5—H50.9500C16—H16B0.9900
C6—C71.385 (3)C17—H17A0.9800
C6—C91.504 (2)C17—H17B0.9800
C8—C101.459 (3)C17—H17C0.9800
C9—H9A0.9800
C4—I1—O2i168.17 (6)H9A—C9—H9C109.5
O2—S1—C1107.75 (9)H9B—C9—H9C109.5
O2—S1—C16106.73 (9)C15—C10—C11119.02 (18)
C1—S1—C1697.34 (9)C15—C10—C8121.67 (17)
C7—O1—C8107.04 (13)C11—C10—C8119.31 (18)
C8—C1—C2107.39 (15)C12A—C11—C10119.2 (2)
C8—C1—S1126.73 (14)C12A—C11—H11120.4
C2—C1—S1125.69 (13)C10—C11—H11120.4
C7—C2—C3119.11 (16)C13—C12A—C11122.5 (2)
C7—C2—C1105.07 (15)C13—C12A—H12A118.8
C3—C2—C1135.82 (16)C11—C12A—H12A118.8
C4—C3—C2116.93 (16)C14A—C13—C12A117.2 (2)
C4—C3—H3121.5C14A—C13—H13121.4
C2—C3—H3121.5C12A—C13—H13121.4
C3—C4—C5122.64 (17)F1A—C14A—C13116.6 (2)
C3—C4—I1117.87 (13)F1A—C14A—C15120.1 (2)
C5—C4—I1119.49 (13)C13—C14A—C15123.3 (2)
C6—C5—C4121.33 (17)C14A—C15—C10118.8 (2)
C6—C5—H5119.3C14A—C15—H15120.6
C4—C5—H5119.3C10—C15—H15120.6
C7—C6—C5114.74 (16)C17—C16—S1110.13 (16)
C7—C6—C9122.26 (17)C17—C16—H16A109.6
C5—C6—C9122.97 (17)S1—C16—H16A109.6
O1—C7—C6124.33 (16)C17—C16—H16B109.6
O1—C7—C2110.45 (15)S1—C16—H16B109.6
C6—C7—C2125.21 (17)H16A—C16—H16B108.1
C1—C8—O1110.02 (16)C16—C17—H17A109.5
C1—C8—C10135.75 (17)C16—C17—H17B109.5
O1—C8—C10114.22 (15)H17A—C17—H17B109.5
C6—C9—H9A109.5C16—C17—H17C109.5
C6—C9—H9B109.5H17A—C17—H17C109.5
H9A—C9—H9B109.5H17B—C17—H17C109.5
C6—C9—H9C109.5
O2—S1—C1—C8−135.41 (17)C1—C2—C7—O1−1.2 (2)
C16—S1—C1—C8114.35 (18)C3—C2—C7—C6−1.2 (3)
O2—S1—C1—C238.91 (18)C1—C2—C7—C6179.34 (18)
C16—S1—C1—C2−71.33 (18)C2—C1—C8—O10.0 (2)
C8—C1—C2—C70.7 (2)S1—C1—C8—O1175.20 (13)
S1—C1—C2—C7−174.51 (14)C2—C1—C8—C10179.08 (19)
C8—C1—C2—C3−178.6 (2)S1—C1—C8—C10−5.8 (3)
S1—C1—C2—C36.2 (3)C7—O1—C8—C1−0.8 (2)
C7—C2—C3—C40.1 (3)C7—O1—C8—C10179.94 (14)
C1—C2—C3—C4179.4 (2)C1—C8—C10—C15−15.3 (3)
C2—C3—C4—C51.5 (3)O1—C8—C10—C15163.69 (17)
C2—C3—C4—I1−178.24 (13)C1—C8—C10—C11165.4 (2)
O2i—I1—C4—C3−17.6 (4)O1—C8—C10—C11−15.5 (2)
O2i—I1—C4—C5162.6 (2)C15—C10—C11—C12A−1.1 (3)
C3—C4—C5—C6−2.2 (3)C8—C10—C11—C12A178.15 (18)
I1—C4—C5—C6177.54 (14)C10—C11—C12A—C131.2 (3)
C4—C5—C6—C71.1 (3)C11—C12A—C13—C14A−0.1 (3)
C4—C5—C6—C9−177.08 (19)C12A—C13—C14A—F1A179.6 (2)
C8—O1—C7—C6−179.30 (17)C12A—C13—C14A—C15−1.2 (4)
C8—O1—C7—C21.27 (19)F1A—C14A—C15—C10−179.6 (2)
C5—C6—C7—O1−178.80 (16)C13—C14A—C15—C101.3 (3)
C9—C6—C7—O1−0.6 (3)C11—C10—C15—C14A−0.1 (3)
C5—C6—C7—C20.6 (3)C8—C10—C15—C14A−179.32 (19)
C9—C6—C7—C2178.76 (18)O2—S1—C16—C1767.44 (18)
C3—C2—C7—O1178.24 (16)C1—S1—C16—C17178.52 (17)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An overview of halogen bonding.

Authors:  Peter Politzer; Pat Lane; Monica C Concha; Yuguang Ma; Jane S Murray
Journal:  J Mol Model       Date:  2006-09-30       Impact factor: 1.810

3.  3-Ethyl-sulfinyl-2-(4-fluoro-phen-yl)-5-iodo-7-methyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-13

4.  2-(4-Chloro-phen-yl)-3-ethyl-sulfinyl-5-iodo-7-methyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-11
  4 in total

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