Literature DB >> 23125746

Bis(2-methyl-1H-benzimidazol-3-ium) naphthalene-1,5-disulfonate.

Shuai-Shuai Wei1, Shou-Wen Jin, Qiong Dong, Xin-Chao Cao, Ze-Yun Yu.   

Abstract

The asymmetric unit of the title compound, 2C(8)H(9)N(2) (+)·C(10)H(6)O(6)S(2) (2-), contains a 2-methyl-benzimidazolium cation and one half of a naphthalene-1,5-disulfonate anion. The formula unit is generated by an inversion center. In the crystal, N-H⋯O hydrogen bonds link the components into chains along [001]. In addition, weak C-H⋯O hydrogen bonds and weak C-H⋯π inter-actions are observed. The methyl H atoms were refined as disordered over two sets of sites with equal occupancy.

Entities:  

Year:  2012        PMID: 23125746      PMCID: PMC3470333          DOI: 10.1107/S1600536812039396

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to organic acids, see: Jin et al. (2012 ▶); Elder et al. (2010 ▶); Voogt & Blanch (2005 ▶); Wang et al. (2005 ▶); Zhang et al. (2005 ▶).

Experimental

Crystal data

2C8H9N2 +·C10H6O6S2 2− M = 552.61 Triclinic, a = 8.0360 (7) Å b = 9.3969 (8) Å c = 9.5101 (9) Å α = 105.789 (1)° β = 103.303 (1)° γ = 106.497 (2)° V = 624.75 (10) Å3 Z = 1 Mo Kα radiation μ = 0.26 mm−1 T = 298 K 0.45 × 0.41 × 0.19 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.888, T max = 0.951 3137 measured reflections 2169 independent reflections 1694 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.119 S = 1.05 2169 reflections 173 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.37 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812039396/lh5531sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812039396/lh5531Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812039396/lh5531Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C8H9N2+·C10H6O6S22Z = 1
Mr = 552.61F(000) = 288
Triclinic, P1Dx = 1.469 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.0360 (7) ÅCell parameters from 1471 reflections
b = 9.3969 (8) Åθ = 2.4–28.0°
c = 9.5101 (9) ŵ = 0.26 mm1
α = 105.789 (1)°T = 298 K
β = 103.303 (1)°Block, colourless
γ = 106.497 (2)°0.45 × 0.41 × 0.19 mm
V = 624.75 (10) Å3
Bruker SMART CCD diffractometer2169 independent reflections
Radiation source: fine-focus sealed tube1694 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
φ and ω scansθmax = 25.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −9→9
Tmin = 0.888, Tmax = 0.951k = −8→11
3137 measured reflectionsl = −10→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H-atom parameters constrained
wR(F2) = 0.119w = 1/[σ2(Fo2) + (0.0583P)2 + 0.1477P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2169 reflectionsΔρmax = 0.28 e Å3
173 parametersΔρmin = −0.37 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.043 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N10.2089 (3)0.0991 (2)−0.0901 (2)0.0390 (5)
H10.18380.1027−0.18170.047*
N20.2562 (3)0.1632 (2)0.1561 (2)0.0404 (5)
H20.26640.21480.24950.048*
O10.3057 (3)0.2484 (2)0.4604 (2)0.0530 (6)
O20.1946 (3)0.1418 (2)0.6381 (2)0.0447 (5)
O30.4010 (3)0.4162 (2)0.7288 (2)0.0524 (5)
S10.25771 (8)0.28337 (7)0.60043 (6)0.0330 (2)
C10.2166 (4)0.2092 (3)0.0356 (3)0.0383 (6)
C20.2784 (3)0.0185 (3)0.1067 (3)0.0354 (6)
C30.2475 (3)−0.0230 (3)−0.0511 (3)0.0354 (6)
C40.2607 (4)−0.1614 (3)−0.1376 (3)0.0436 (7)
H40.2379−0.1902−0.24380.052*
C50.3095 (4)−0.2543 (3)−0.0584 (3)0.0495 (7)
H50.3195−0.3484−0.11250.059*
C60.3443 (4)−0.2105 (3)0.1010 (3)0.0497 (7)
H60.3796−0.27510.15060.060*
C70.3281 (4)−0.0747 (3)0.1870 (3)0.0455 (7)
H70.3493−0.04670.29290.055*
C80.1861 (4)0.3582 (3)0.0410 (4)0.0552 (8)
H8A0.19930.41760.14520.083*0.50
H8B0.06430.3332−0.02630.083*0.50
H8C0.27490.42060.00770.083*0.50
H8D0.15970.3633−0.06080.083*0.50
H8E0.29470.44770.11060.083*0.50
H8F0.08410.36030.07670.083*0.50
C9−0.0943 (3)0.2568 (3)0.5733 (3)0.0356 (6)
H9−0.10130.16810.60090.043*
C100.0652 (3)0.3429 (3)0.5591 (2)0.0284 (5)
C110.0793 (3)0.4782 (3)0.5137 (2)0.0275 (5)
C120.2405 (3)0.5702 (3)0.4963 (3)0.0336 (6)
H120.34380.54270.51430.040*
C130.2477 (3)0.6986 (3)0.4535 (3)0.0388 (6)
H130.35520.75700.44210.047*
U11U22U33U12U13U23
N10.0449 (13)0.0439 (13)0.0288 (11)0.0159 (11)0.0095 (10)0.0171 (10)
N20.0476 (14)0.0419 (13)0.0294 (11)0.0160 (11)0.0130 (10)0.0101 (10)
O10.0700 (14)0.0829 (15)0.0407 (11)0.0547 (12)0.0338 (10)0.0335 (10)
O20.0573 (12)0.0481 (11)0.0447 (10)0.0312 (10)0.0162 (9)0.0290 (9)
O30.0407 (11)0.0512 (12)0.0517 (12)0.0217 (10)−0.0051 (9)0.0104 (9)
S10.0378 (4)0.0441 (4)0.0266 (3)0.0251 (3)0.0108 (3)0.0166 (3)
C10.0355 (14)0.0395 (15)0.0375 (14)0.0113 (12)0.0089 (11)0.0155 (12)
C20.0355 (14)0.0385 (14)0.0301 (13)0.0099 (11)0.0107 (11)0.0136 (11)
C30.0368 (14)0.0395 (14)0.0319 (13)0.0130 (12)0.0118 (11)0.0166 (11)
C40.0476 (17)0.0448 (16)0.0327 (13)0.0148 (13)0.0114 (12)0.0095 (12)
C50.0500 (17)0.0393 (16)0.0580 (18)0.0182 (14)0.0170 (15)0.0149 (14)
C60.0512 (18)0.0452 (17)0.0570 (18)0.0174 (14)0.0127 (14)0.0298 (15)
C70.0518 (17)0.0488 (17)0.0369 (14)0.0144 (14)0.0125 (13)0.0235 (13)
C80.0558 (19)0.0448 (17)0.0609 (19)0.0220 (15)0.0107 (16)0.0169 (15)
C90.0424 (15)0.0397 (14)0.0350 (13)0.0185 (12)0.0167 (12)0.0221 (12)
C100.0315 (13)0.0366 (13)0.0225 (11)0.0181 (11)0.0092 (10)0.0126 (10)
C110.0318 (13)0.0336 (13)0.0214 (11)0.0162 (11)0.0100 (10)0.0112 (10)
C120.0286 (13)0.0467 (15)0.0353 (13)0.0211 (12)0.0137 (11)0.0194 (12)
C130.0329 (14)0.0477 (15)0.0463 (15)0.0160 (12)0.0194 (12)0.0261 (13)
N1—C11.327 (3)C6—H60.9300
N1—C31.390 (3)C7—H70.9300
N1—H10.8600C8—H8A0.9600
N2—C11.335 (3)C8—H8B0.9600
N2—C21.389 (3)C8—H8C0.9600
N2—H20.8600C8—H8D0.9600
O1—S11.4491 (17)C8—H8E0.9600
O2—S11.4543 (17)C8—H8F0.9600
O3—S11.4427 (19)C9—C101.366 (3)
S1—C101.786 (2)C9—C13i1.403 (4)
C1—C81.478 (4)C9—H90.9300
C2—C31.386 (3)C10—C111.433 (3)
C2—C71.390 (4)C11—C121.413 (3)
C3—C41.384 (3)C11—C11i1.436 (4)
C4—C51.378 (4)C12—C131.365 (3)
C4—H40.9300C12—H120.9300
C5—C61.395 (4)C13—C9i1.403 (4)
C5—H50.9300C13—H130.9300
C6—C71.375 (4)
C1—N1—C3109.56 (19)H8A—C8—H8B109.5
C1—N1—H1125.2C1—C8—H8C109.5
C3—N1—H1125.2H8A—C8—H8C109.5
C1—N2—C2109.1 (2)H8B—C8—H8C109.5
C1—N2—H2125.5C1—C8—H8D109.5
C2—N2—H2125.5H8A—C8—H8D141.1
O3—S1—O1112.92 (13)H8B—C8—H8D56.3
O3—S1—O2113.16 (11)H8C—C8—H8D56.3
O1—S1—O2111.54 (11)C1—C8—H8E109.5
O3—S1—C10106.00 (11)H8A—C8—H8E56.3
O1—S1—C10106.50 (10)H8B—C8—H8E141.1
O2—S1—C10106.07 (11)H8C—C8—H8E56.3
N1—C1—N2108.8 (2)H8D—C8—H8E109.5
N1—C1—C8125.5 (2)C1—C8—H8F109.5
N2—C1—C8125.7 (2)H8A—C8—H8F56.3
C3—C2—N2106.4 (2)H8B—C8—H8F56.3
C3—C2—C7121.8 (2)H8C—C8—H8F141.1
N2—C2—C7131.7 (2)H8D—C8—H8F109.5
C4—C3—C2121.7 (2)H8E—C8—H8F109.5
C4—C3—N1132.2 (2)C10—C9—C13i120.3 (2)
C2—C3—N1106.1 (2)C10—C9—H9119.8
C5—C4—C3116.6 (2)C13i—C9—H9119.8
C5—C4—H4121.7C9—C10—C11121.2 (2)
C3—C4—H4121.7C9—C10—S1118.13 (18)
C4—C5—C6121.5 (3)C11—C10—S1120.63 (17)
C4—C5—H5119.2C12—C11—C10123.4 (2)
C6—C5—H5119.2C12—C11—C11i118.9 (2)
C7—C6—C5122.0 (3)C10—C11—C11i117.7 (3)
C7—C6—H6119.0C13—C12—C11121.3 (2)
C5—C6—H6119.0C13—C12—H12119.4
C6—C7—C2116.2 (2)C11—C12—H12119.4
C6—C7—H7121.9C12—C13—C9i120.5 (2)
C2—C7—H7121.9C12—C13—H13119.7
C1—C8—H8A109.5C9i—C13—H13119.7
C1—C8—H8B109.5
C3—N1—C1—N2−1.0 (3)C3—C2—C7—C6−0.2 (4)
C3—N1—C1—C8179.1 (3)N2—C2—C7—C6−177.4 (3)
C2—N2—C1—N11.1 (3)C13i—C9—C10—C11−1.3 (4)
C2—N2—C1—C8−178.9 (3)C13i—C9—C10—S1178.19 (18)
C1—N2—C2—C3−0.9 (3)O3—S1—C10—C9−118.6 (2)
C1—N2—C2—C7176.6 (3)O1—S1—C10—C9120.9 (2)
N2—C2—C3—C4179.3 (2)O2—S1—C10—C92.0 (2)
C7—C2—C3—C41.5 (4)O3—S1—C10—C1160.9 (2)
N2—C2—C3—N10.3 (3)O1—S1—C10—C11−59.6 (2)
C7—C2—C3—N1−177.5 (2)O2—S1—C10—C11−178.54 (17)
C1—N1—C3—C4−178.4 (3)C9—C10—C11—C12−179.5 (2)
C1—N1—C3—C20.4 (3)S1—C10—C11—C121.1 (3)
C2—C3—C4—C5−1.2 (4)C9—C10—C11—C11i1.1 (4)
N1—C3—C4—C5177.5 (3)S1—C10—C11—C11i−178.4 (2)
C3—C4—C5—C6−0.2 (4)C10—C11—C12—C13−179.7 (2)
C4—C5—C6—C71.4 (5)C11i—C11—C12—C13−0.2 (4)
C5—C6—C7—C2−1.2 (4)C11—C12—C13—C9i0.4 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2ii0.861.862.704 (3)165
N2—H2···O10.861.882.684 (3)155
C8—H8E···O3iii0.962.323.230 (4)158
C4—H4···Cg1iv0.932.613.468 (3)154
C4—H4···Cg2v0.932.613.468 (3)154
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C9–C11/C11i/C12i/C13i and C11–C13/C9i/C10i/C11i rings, respectively [symmetry code: (i) −x, −y + 1, −z + 1].

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O2ii 0.861.862.704 (3)165
N2—H2⋯O10.861.882.684 (3)155
C8—H8E⋯O3iii 0.962.323.230 (4)158
C4—H4⋯Cg1iv 0.932.613.468 (3)154
C4—H4⋯Cg2v 0.932.613.468 (3)154

Symmetry codes: (ii) ; (iii) ; (iv) ; (v) .

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