| Literature DB >> 23125746 |
Shuai-Shuai Wei1, Shou-Wen Jin, Qiong Dong, Xin-Chao Cao, Ze-Yun Yu.
Abstract
The asymmetric unit of the title compound, 2C(8)H(9)N(2) (+)·C(10)H(6)O(6)S(2) (2-), contains a 2-methyl-benzimidazolium cation and one half of a naphthalene-1,5-disulfonate anion. The formula unit is generated by an inversion center. In the crystal, N-H⋯O hydrogen bonds link the components into chains along [001]. In addition, weak C-H⋯O hydrogen bonds and weak C-H⋯π inter-actions are observed. The methyl H atoms were refined as disordered over two sets of sites with equal occupancy.Entities:
Year: 2012 PMID: 23125746 PMCID: PMC3470333 DOI: 10.1107/S1600536812039396
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 2C8H9N2+·C10H6O6S22− | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1471 reflections | |
| θ = 2.4–28.0° | |
| µ = 0.26 mm−1 | |
| α = 105.789 (1)° | |
| β = 103.303 (1)° | Block, colourless |
| γ = 106.497 (2)° | 0.45 × 0.41 × 0.19 mm |
| Bruker SMART CCD diffractometer | 2169 independent reflections |
| Radiation source: fine-focus sealed tube | 1694 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.0°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 3137 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2169 reflections | Δρmax = 0.28 e Å−3 |
| 173 parameters | Δρmin = −0.37 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.043 (6) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| N1 | 0.2089 (3) | 0.0991 (2) | −0.0901 (2) | 0.0390 (5) | |
| H1 | 0.1838 | 0.1027 | −0.1817 | 0.047* | |
| N2 | 0.2562 (3) | 0.1632 (2) | 0.1561 (2) | 0.0404 (5) | |
| H2 | 0.2664 | 0.2148 | 0.2495 | 0.048* | |
| O1 | 0.3057 (3) | 0.2484 (2) | 0.4604 (2) | 0.0530 (6) | |
| O2 | 0.1946 (3) | 0.1418 (2) | 0.6381 (2) | 0.0447 (5) | |
| O3 | 0.4010 (3) | 0.4162 (2) | 0.7288 (2) | 0.0524 (5) | |
| S1 | 0.25771 (8) | 0.28337 (7) | 0.60043 (6) | 0.0330 (2) | |
| C1 | 0.2166 (4) | 0.2092 (3) | 0.0356 (3) | 0.0383 (6) | |
| C2 | 0.2784 (3) | 0.0185 (3) | 0.1067 (3) | 0.0354 (6) | |
| C3 | 0.2475 (3) | −0.0230 (3) | −0.0511 (3) | 0.0354 (6) | |
| C4 | 0.2607 (4) | −0.1614 (3) | −0.1376 (3) | 0.0436 (7) | |
| H4 | 0.2379 | −0.1902 | −0.2438 | 0.052* | |
| C5 | 0.3095 (4) | −0.2543 (3) | −0.0584 (3) | 0.0495 (7) | |
| H5 | 0.3195 | −0.3484 | −0.1125 | 0.059* | |
| C6 | 0.3443 (4) | −0.2105 (3) | 0.1010 (3) | 0.0497 (7) | |
| H6 | 0.3796 | −0.2751 | 0.1506 | 0.060* | |
| C7 | 0.3281 (4) | −0.0747 (3) | 0.1870 (3) | 0.0455 (7) | |
| H7 | 0.3493 | −0.0467 | 0.2929 | 0.055* | |
| C8 | 0.1861 (4) | 0.3582 (3) | 0.0410 (4) | 0.0552 (8) | |
| H8A | 0.1993 | 0.4176 | 0.1452 | 0.083* | 0.50 |
| H8B | 0.0643 | 0.3332 | −0.0263 | 0.083* | 0.50 |
| H8C | 0.2749 | 0.4206 | 0.0077 | 0.083* | 0.50 |
| H8D | 0.1597 | 0.3633 | −0.0608 | 0.083* | 0.50 |
| H8E | 0.2947 | 0.4477 | 0.1106 | 0.083* | 0.50 |
| H8F | 0.0841 | 0.3603 | 0.0767 | 0.083* | 0.50 |
| C9 | −0.0943 (3) | 0.2568 (3) | 0.5733 (3) | 0.0356 (6) | |
| H9 | −0.1013 | 0.1681 | 0.6009 | 0.043* | |
| C10 | 0.0652 (3) | 0.3429 (3) | 0.5591 (2) | 0.0284 (5) | |
| C11 | 0.0793 (3) | 0.4782 (3) | 0.5137 (2) | 0.0275 (5) | |
| C12 | 0.2405 (3) | 0.5702 (3) | 0.4963 (3) | 0.0336 (6) | |
| H12 | 0.3438 | 0.5427 | 0.5143 | 0.040* | |
| C13 | 0.2477 (3) | 0.6986 (3) | 0.4535 (3) | 0.0388 (6) | |
| H13 | 0.3552 | 0.7570 | 0.4421 | 0.047* |
| N1 | 0.0449 (13) | 0.0439 (13) | 0.0288 (11) | 0.0159 (11) | 0.0095 (10) | 0.0171 (10) |
| N2 | 0.0476 (14) | 0.0419 (13) | 0.0294 (11) | 0.0160 (11) | 0.0130 (10) | 0.0101 (10) |
| O1 | 0.0700 (14) | 0.0829 (15) | 0.0407 (11) | 0.0547 (12) | 0.0338 (10) | 0.0335 (10) |
| O2 | 0.0573 (12) | 0.0481 (11) | 0.0447 (10) | 0.0312 (10) | 0.0162 (9) | 0.0290 (9) |
| O3 | 0.0407 (11) | 0.0512 (12) | 0.0517 (12) | 0.0217 (10) | −0.0051 (9) | 0.0104 (9) |
| S1 | 0.0378 (4) | 0.0441 (4) | 0.0266 (3) | 0.0251 (3) | 0.0108 (3) | 0.0166 (3) |
| C1 | 0.0355 (14) | 0.0395 (15) | 0.0375 (14) | 0.0113 (12) | 0.0089 (11) | 0.0155 (12) |
| C2 | 0.0355 (14) | 0.0385 (14) | 0.0301 (13) | 0.0099 (11) | 0.0107 (11) | 0.0136 (11) |
| C3 | 0.0368 (14) | 0.0395 (14) | 0.0319 (13) | 0.0130 (12) | 0.0118 (11) | 0.0166 (11) |
| C4 | 0.0476 (17) | 0.0448 (16) | 0.0327 (13) | 0.0148 (13) | 0.0114 (12) | 0.0095 (12) |
| C5 | 0.0500 (17) | 0.0393 (16) | 0.0580 (18) | 0.0182 (14) | 0.0170 (15) | 0.0149 (14) |
| C6 | 0.0512 (18) | 0.0452 (17) | 0.0570 (18) | 0.0174 (14) | 0.0127 (14) | 0.0298 (15) |
| C7 | 0.0518 (17) | 0.0488 (17) | 0.0369 (14) | 0.0144 (14) | 0.0125 (13) | 0.0235 (13) |
| C8 | 0.0558 (19) | 0.0448 (17) | 0.0609 (19) | 0.0220 (15) | 0.0107 (16) | 0.0169 (15) |
| C9 | 0.0424 (15) | 0.0397 (14) | 0.0350 (13) | 0.0185 (12) | 0.0167 (12) | 0.0221 (12) |
| C10 | 0.0315 (13) | 0.0366 (13) | 0.0225 (11) | 0.0181 (11) | 0.0092 (10) | 0.0126 (10) |
| C11 | 0.0318 (13) | 0.0336 (13) | 0.0214 (11) | 0.0162 (11) | 0.0100 (10) | 0.0112 (10) |
| C12 | 0.0286 (13) | 0.0467 (15) | 0.0353 (13) | 0.0211 (12) | 0.0137 (11) | 0.0194 (12) |
| C13 | 0.0329 (14) | 0.0477 (15) | 0.0463 (15) | 0.0160 (12) | 0.0194 (12) | 0.0261 (13) |
| N1—C1 | 1.327 (3) | C6—H6 | 0.9300 |
| N1—C3 | 1.390 (3) | C7—H7 | 0.9300 |
| N1—H1 | 0.8600 | C8—H8A | 0.9600 |
| N2—C1 | 1.335 (3) | C8—H8B | 0.9600 |
| N2—C2 | 1.389 (3) | C8—H8C | 0.9600 |
| N2—H2 | 0.8600 | C8—H8D | 0.9600 |
| O1—S1 | 1.4491 (17) | C8—H8E | 0.9600 |
| O2—S1 | 1.4543 (17) | C8—H8F | 0.9600 |
| O3—S1 | 1.4427 (19) | C9—C10 | 1.366 (3) |
| S1—C10 | 1.786 (2) | C9—C13i | 1.403 (4) |
| C1—C8 | 1.478 (4) | C9—H9 | 0.9300 |
| C2—C3 | 1.386 (3) | C10—C11 | 1.433 (3) |
| C2—C7 | 1.390 (4) | C11—C12 | 1.413 (3) |
| C3—C4 | 1.384 (3) | C11—C11i | 1.436 (4) |
| C4—C5 | 1.378 (4) | C12—C13 | 1.365 (3) |
| C4—H4 | 0.9300 | C12—H12 | 0.9300 |
| C5—C6 | 1.395 (4) | C13—C9i | 1.403 (4) |
| C5—H5 | 0.9300 | C13—H13 | 0.9300 |
| C6—C7 | 1.375 (4) | ||
| C1—N1—C3 | 109.56 (19) | H8A—C8—H8B | 109.5 |
| C1—N1—H1 | 125.2 | C1—C8—H8C | 109.5 |
| C3—N1—H1 | 125.2 | H8A—C8—H8C | 109.5 |
| C1—N2—C2 | 109.1 (2) | H8B—C8—H8C | 109.5 |
| C1—N2—H2 | 125.5 | C1—C8—H8D | 109.5 |
| C2—N2—H2 | 125.5 | H8A—C8—H8D | 141.1 |
| O3—S1—O1 | 112.92 (13) | H8B—C8—H8D | 56.3 |
| O3—S1—O2 | 113.16 (11) | H8C—C8—H8D | 56.3 |
| O1—S1—O2 | 111.54 (11) | C1—C8—H8E | 109.5 |
| O3—S1—C10 | 106.00 (11) | H8A—C8—H8E | 56.3 |
| O1—S1—C10 | 106.50 (10) | H8B—C8—H8E | 141.1 |
| O2—S1—C10 | 106.07 (11) | H8C—C8—H8E | 56.3 |
| N1—C1—N2 | 108.8 (2) | H8D—C8—H8E | 109.5 |
| N1—C1—C8 | 125.5 (2) | C1—C8—H8F | 109.5 |
| N2—C1—C8 | 125.7 (2) | H8A—C8—H8F | 56.3 |
| C3—C2—N2 | 106.4 (2) | H8B—C8—H8F | 56.3 |
| C3—C2—C7 | 121.8 (2) | H8C—C8—H8F | 141.1 |
| N2—C2—C7 | 131.7 (2) | H8D—C8—H8F | 109.5 |
| C4—C3—C2 | 121.7 (2) | H8E—C8—H8F | 109.5 |
| C4—C3—N1 | 132.2 (2) | C10—C9—C13i | 120.3 (2) |
| C2—C3—N1 | 106.1 (2) | C10—C9—H9 | 119.8 |
| C5—C4—C3 | 116.6 (2) | C13i—C9—H9 | 119.8 |
| C5—C4—H4 | 121.7 | C9—C10—C11 | 121.2 (2) |
| C3—C4—H4 | 121.7 | C9—C10—S1 | 118.13 (18) |
| C4—C5—C6 | 121.5 (3) | C11—C10—S1 | 120.63 (17) |
| C4—C5—H5 | 119.2 | C12—C11—C10 | 123.4 (2) |
| C6—C5—H5 | 119.2 | C12—C11—C11i | 118.9 (2) |
| C7—C6—C5 | 122.0 (3) | C10—C11—C11i | 117.7 (3) |
| C7—C6—H6 | 119.0 | C13—C12—C11 | 121.3 (2) |
| C5—C6—H6 | 119.0 | C13—C12—H12 | 119.4 |
| C6—C7—C2 | 116.2 (2) | C11—C12—H12 | 119.4 |
| C6—C7—H7 | 121.9 | C12—C13—C9i | 120.5 (2) |
| C2—C7—H7 | 121.9 | C12—C13—H13 | 119.7 |
| C1—C8—H8A | 109.5 | C9i—C13—H13 | 119.7 |
| C1—C8—H8B | 109.5 | ||
| C3—N1—C1—N2 | −1.0 (3) | C3—C2—C7—C6 | −0.2 (4) |
| C3—N1—C1—C8 | 179.1 (3) | N2—C2—C7—C6 | −177.4 (3) |
| C2—N2—C1—N1 | 1.1 (3) | C13i—C9—C10—C11 | −1.3 (4) |
| C2—N2—C1—C8 | −178.9 (3) | C13i—C9—C10—S1 | 178.19 (18) |
| C1—N2—C2—C3 | −0.9 (3) | O3—S1—C10—C9 | −118.6 (2) |
| C1—N2—C2—C7 | 176.6 (3) | O1—S1—C10—C9 | 120.9 (2) |
| N2—C2—C3—C4 | 179.3 (2) | O2—S1—C10—C9 | 2.0 (2) |
| C7—C2—C3—C4 | 1.5 (4) | O3—S1—C10—C11 | 60.9 (2) |
| N2—C2—C3—N1 | 0.3 (3) | O1—S1—C10—C11 | −59.6 (2) |
| C7—C2—C3—N1 | −177.5 (2) | O2—S1—C10—C11 | −178.54 (17) |
| C1—N1—C3—C4 | −178.4 (3) | C9—C10—C11—C12 | −179.5 (2) |
| C1—N1—C3—C2 | 0.4 (3) | S1—C10—C11—C12 | 1.1 (3) |
| C2—C3—C4—C5 | −1.2 (4) | C9—C10—C11—C11i | 1.1 (4) |
| N1—C3—C4—C5 | 177.5 (3) | S1—C10—C11—C11i | −178.4 (2) |
| C3—C4—C5—C6 | −0.2 (4) | C10—C11—C12—C13 | −179.7 (2) |
| C4—C5—C6—C7 | 1.4 (5) | C11i—C11—C12—C13 | −0.2 (4) |
| C5—C6—C7—C2 | −1.2 (4) | C11—C12—C13—C9i | 0.4 (4) |
| H··· | ||||
| N1—H1···O2ii | 0.86 | 1.86 | 2.704 (3) | 165 |
| N2—H2···O1 | 0.86 | 1.88 | 2.684 (3) | 155 |
| C8—H8 | 0.96 | 2.32 | 3.230 (4) | 158 |
| C4—H4··· | 0.93 | 2.61 | 3.468 (3) | 154 |
| C4—H4··· | 0.93 | 2.61 | 3.468 (3) | 154 |
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of the C9–C11/C11i/C12i/C13i and C11–C13/C9i/C10i/C11i rings, respectively [symmetry code: (i) −x, −y + 1, −z + 1].
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O2ii | 0.86 | 1.86 | 2.704 (3) | 165 |
| N2—H2⋯O1 | 0.86 | 1.88 | 2.684 (3) | 155 |
| C8—H8 | 0.96 | 2.32 | 3.230 (4) | 158 |
| C4—H4⋯ | 0.93 | 2.61 | 3.468 (3) | 154 |
| C4—H4⋯ | 0.93 | 2.61 | 3.468 (3) | 154 |
Symmetry codes: (ii) ; (iii) ; (iv) ; (v) .