Literature DB >> 23125737

N,N-Dicyclo-hexyl-3,5-dinitro-benzamide.

Sohail Saeed1, Naghmana Rashid, Ray J Butcher, Sema Oztürk Yildirim, Rizwan Hussain.   

Abstract

In the title compound, C(19)H(25)N(3)O(5), the benzene ring is not coplanar with the amide group [dihedral angle = 61.90 (5)°]. The cyclo-hexyl rings are in chair conformations. There is a strong inter-molecular inter-action between the C=O group of the amide group and the nitro group of an adjoining mol-ecule, with a short O⋯N distance of 2.7862 (17) Å. In the crystal, C-H⋯O inter-actions occur along the [100] direction.

Entities:  

Year:  2012        PMID: 23125737      PMCID: PMC3470324          DOI: 10.1107/S1600536812038500

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of N-substituted benzamides and their use in synthesis, see: Priya et al. (2005 ▶). For related structures and their use in mol­ecular recognition, see: Toda et al. (1987 ▶); Saeed et al. (2011 ▶, 2012 ▶). For puckering parameters, see Cremer & Pople (1975 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C19H25N3O5 M = 375.42 Triclinic, a = 6.8187 (7) Å b = 9.7877 (12) Å c = 14.7423 (12) Å α = 92.512 (8)° β = 98.898 (8)° γ = 99.704 (9)° V = 955.67 (17) Å3 Z = 2 Cu Kα radiation μ = 0.79 mm−1 T = 123 K 0.51 × 0.17 × 0.04 mm

Data collection

Agilent Xcalibur Ruby Gemini diffractometer Absorption correction: multi-scan [CrysAlis RED (Agilent, 2011 ▶), based on expressions derived from Clark & Reid (1995 ▶)] T min = 0.690, T max = 0.969 6078 measured reflections 3811 independent reflections 3144 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.132 S = 1.03 3811 reflections 244 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812038500/nk2179sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812038500/nk2179Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812038500/nk2179Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H25N3O5Z = 2
Mr = 375.42F(000) = 400
Triclinic, P1Dx = 1.305 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54184 Å
a = 6.8187 (7) ÅCell parameters from 2277 reflections
b = 9.7877 (12) Åθ = 3.0–75.2°
c = 14.7423 (12) ŵ = 0.79 mm1
α = 92.512 (8)°T = 123 K
β = 98.898 (8)°`needle-plate`, colorless
γ = 99.704 (9)°0.51 × 0.17 × 0.04 mm
V = 955.67 (17) Å3
Agilent Xcalibur Ruby Gemini diffractometer3811 independent reflections
Radiation source: Enhance (Cu) X-ray Source3144 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
Detector resolution: 10.5081 pixels mm-1θmax = 75.4°, θmin = 3.0°
ω scansh = −8→7
Absorption correction: multi-scan [CrysAlis RED (Agilent, 2011), based on expressions derived from Clark & Reid (1995)]k = −10→12
Tmin = 0.690, Tmax = 0.969l = −18→15
6078 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0695P)2 + 0.0476P] where P = (Fo2 + 2Fc2)/3
3811 reflections(Δ/σ)max < 0.001
244 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.23 e Å3
Experimental. Absorption correction: CrysAlis RED, (Agilent, 2011) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. (Clark & Reid, 1995).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.23442 (17)0.94242 (13)0.55223 (8)0.0308 (3)
O20.4677 (2)0.98065 (14)0.67312 (8)0.0362 (3)
O31.03595 (18)0.75165 (13)0.69435 (7)0.0325 (3)
O41.08761 (16)0.63134 (13)0.57626 (8)0.0303 (3)
O50.29440 (16)0.51429 (12)0.34083 (7)0.0274 (3)
N10.3957 (2)0.92478 (14)0.59620 (9)0.0259 (3)
N20.98833 (19)0.70201 (14)0.61477 (8)0.0252 (3)
N30.54384 (18)0.61099 (13)0.26430 (8)0.0220 (3)
C10.5115 (2)0.83290 (15)0.55400 (10)0.0234 (3)
C20.6958 (2)0.81731 (16)0.60284 (9)0.0234 (3)
H2A0.74780.86460.66150.028*
C30.7997 (2)0.72959 (16)0.56194 (10)0.0226 (3)
C40.7312 (2)0.66292 (16)0.47469 (9)0.0228 (3)
H4A0.80900.60510.44790.027*
C50.5460 (2)0.68296 (16)0.42755 (9)0.0227 (3)
C60.4320 (2)0.76562 (16)0.46813 (10)0.0233 (3)
H6A0.30250.77590.43770.028*
C70.4509 (2)0.59667 (16)0.33856 (9)0.0222 (3)
C80.4805 (2)0.50539 (16)0.18488 (9)0.0230 (3)
H8A0.57240.53160.13940.028*
C90.5117 (2)0.36144 (17)0.21379 (10)0.0291 (3)
H9A0.42700.33280.26090.035*
H9B0.65450.36540.24150.035*
C100.4561 (3)0.25421 (18)0.13107 (11)0.0329 (4)
H10A0.54980.27760.08680.040*
H10B0.47010.16100.15190.040*
C110.2403 (3)0.25131 (18)0.08358 (11)0.0338 (4)
H11A0.20870.18350.02930.041*
H11B0.14580.22110.12640.041*
C120.2126 (3)0.39444 (18)0.05318 (10)0.0325 (4)
H12A0.07090.39070.02370.039*
H12B0.30040.42160.00700.039*
C130.2648 (2)0.50401 (17)0.13510 (10)0.0270 (3)
H13A0.25350.59690.11300.032*
H13B0.16830.48250.17840.032*
C140.7089 (2)0.72822 (15)0.25786 (9)0.0216 (3)
H14A0.72520.79210.31440.026*
C150.6558 (2)0.81222 (16)0.17448 (9)0.0236 (3)
H15A0.63570.75160.11710.028*
H15B0.52830.84610.17840.028*
C160.8253 (2)0.93638 (17)0.17186 (10)0.0275 (3)
H16A0.79320.98490.11540.033*
H16B0.83341.00270.22550.033*
C171.0291 (2)0.89085 (18)0.17335 (11)0.0294 (3)
H17A1.13590.97390.17640.035*
H17B1.02690.83400.11590.035*
C181.0770 (2)0.80630 (17)0.25612 (10)0.0276 (3)
H18A1.09160.86600.31360.033*
H18C1.20670.77450.25420.033*
C190.9104 (2)0.68002 (16)0.25653 (10)0.0251 (3)
H19C0.90080.61700.20100.030*
H19A0.94320.62830.31140.030*
U11U22U33U12U13U23
O10.0303 (6)0.0312 (6)0.0329 (6)0.0102 (5)0.0063 (4)0.0034 (5)
O20.0422 (7)0.0403 (7)0.0264 (5)0.0109 (5)0.0059 (5)−0.0091 (5)
O30.0332 (6)0.0371 (6)0.0230 (5)0.0058 (5)−0.0054 (4)−0.0046 (5)
O40.0261 (5)0.0339 (6)0.0309 (5)0.0080 (5)0.0028 (4)−0.0002 (5)
O50.0273 (5)0.0304 (6)0.0222 (5)−0.0011 (4)0.0046 (4)0.0000 (4)
N10.0297 (6)0.0251 (6)0.0239 (6)0.0046 (5)0.0075 (5)0.0031 (5)
N20.0251 (6)0.0250 (6)0.0236 (6)0.0010 (5)0.0018 (5)0.0018 (5)
N30.0231 (6)0.0238 (6)0.0178 (5)0.0020 (5)0.0022 (4)−0.0009 (4)
C10.0281 (7)0.0222 (7)0.0208 (6)0.0032 (6)0.0077 (5)0.0030 (5)
C20.0281 (7)0.0239 (7)0.0171 (6)0.0007 (5)0.0048 (5)0.0006 (5)
C30.0223 (6)0.0241 (7)0.0204 (6)0.0009 (5)0.0031 (5)0.0031 (5)
C40.0248 (7)0.0243 (7)0.0195 (6)0.0030 (5)0.0065 (5)0.0006 (5)
C50.0266 (7)0.0248 (7)0.0158 (6)0.0009 (5)0.0045 (5)0.0024 (5)
C60.0241 (6)0.0264 (7)0.0192 (6)0.0030 (5)0.0033 (5)0.0051 (5)
C70.0242 (6)0.0230 (7)0.0194 (6)0.0055 (5)0.0020 (5)0.0017 (5)
C80.0272 (7)0.0239 (7)0.0167 (6)0.0021 (5)0.0035 (5)−0.0013 (5)
C90.0344 (8)0.0282 (8)0.0234 (7)0.0087 (6)−0.0021 (6)−0.0001 (6)
C100.0441 (9)0.0260 (8)0.0292 (8)0.0103 (7)0.0044 (7)−0.0024 (6)
C110.0447 (9)0.0268 (8)0.0249 (7)0.0002 (7)−0.0009 (7)−0.0044 (6)
C120.0403 (9)0.0312 (8)0.0213 (7)0.0040 (7)−0.0050 (6)−0.0033 (6)
C130.0308 (7)0.0273 (8)0.0213 (7)0.0073 (6)−0.0017 (6)−0.0021 (6)
C140.0242 (6)0.0230 (7)0.0169 (6)0.0026 (5)0.0032 (5)0.0006 (5)
C150.0267 (7)0.0250 (7)0.0191 (6)0.0053 (5)0.0027 (5)0.0021 (5)
C160.0323 (7)0.0251 (7)0.0245 (7)0.0027 (6)0.0045 (6)0.0043 (6)
C170.0288 (7)0.0309 (8)0.0271 (7)−0.0007 (6)0.0065 (6)0.0038 (6)
C180.0228 (7)0.0316 (8)0.0270 (7)0.0023 (6)0.0025 (5)0.0032 (6)
C190.0235 (7)0.0275 (7)0.0244 (7)0.0045 (6)0.0042 (5)0.0034 (5)
O1—N11.2300 (18)C10—H10A0.9900
O2—N11.2284 (18)C10—H10B0.9900
O3—N21.2235 (17)C11—C121.522 (2)
O4—N21.2253 (18)C11—H11A0.9900
O5—C71.2299 (19)C11—H11B0.9900
N1—C11.470 (2)C12—C131.536 (2)
N2—C31.4696 (19)C12—H12A0.9900
N3—C71.3486 (19)C12—H12B0.9900
N3—C141.4831 (18)C13—H13A0.9900
N3—C81.4874 (17)C13—H13B0.9900
C1—C21.384 (2)C14—C191.528 (2)
C1—C61.387 (2)C14—C151.5392 (19)
C2—C31.376 (2)C14—H14A1.0000
C2—H2A0.9500C15—C161.536 (2)
C3—C41.391 (2)C15—H15A0.9900
C4—C51.393 (2)C15—H15B0.9900
C4—H4A0.9500C16—C171.526 (2)
C5—C61.389 (2)C16—H16A0.9900
C5—C71.5199 (19)C16—H16B0.9900
C6—H6A0.9500C17—C181.529 (2)
C8—C91.529 (2)C17—H17A0.9900
C8—C131.536 (2)C17—H17B0.9900
C8—H8A1.0000C18—C191.532 (2)
C9—C101.531 (2)C18—H18A0.9900
C9—H9A0.9900C18—H18C0.9900
C9—H9B0.9900C19—H19C0.9900
C10—C111.523 (2)C19—H19A0.9900
O2—N1—O1123.96 (14)C12—C11—H11B109.5
O2—N1—C1117.72 (13)C10—C11—H11B109.5
O1—N1—C1118.31 (13)H11A—C11—H11B108.1
O3—N2—O4124.38 (13)C11—C12—C13111.33 (13)
O3—N2—C3117.65 (13)C11—C12—H12A109.4
O4—N2—C3117.97 (12)C13—C12—H12A109.4
C7—N3—C14122.84 (12)C11—C12—H12B109.4
C7—N3—C8119.34 (12)C13—C12—H12B109.4
C14—N3—C8117.82 (11)H12A—C12—H12B108.0
C2—C1—C6123.08 (15)C8—C13—C12110.00 (13)
C2—C1—N1117.81 (13)C8—C13—H13A109.7
C6—C1—N1119.12 (14)C12—C13—H13A109.7
C3—C2—C1116.45 (13)C8—C13—H13B109.7
C3—C2—H2A121.8C12—C13—H13B109.7
C1—C2—H2A121.8H13A—C13—H13B108.2
C2—C3—C4123.15 (14)N3—C14—C19112.10 (12)
C2—C3—N2117.98 (13)N3—C14—C15111.61 (11)
C4—C3—N2118.84 (14)C19—C14—C15111.05 (12)
C3—C4—C5118.39 (14)N3—C14—H14A107.3
C3—C4—H4A120.8C19—C14—H14A107.3
C5—C4—H4A120.8C15—C14—H14A107.3
C6—C5—C4120.26 (13)C16—C15—C14110.47 (12)
C6—C5—C7118.74 (13)C16—C15—H15A109.6
C4—C5—C7120.25 (14)C14—C15—H15A109.6
C1—C6—C5118.57 (14)C16—C15—H15B109.6
C1—C6—H6A120.7C14—C15—H15B109.6
C5—C6—H6A120.7H15A—C15—H15B108.1
O5—C7—N3124.41 (13)C17—C16—C15111.74 (13)
O5—C7—C5116.40 (12)C17—C16—H16A109.3
N3—C7—C5119.15 (12)C15—C16—H16A109.3
N3—C8—C9110.96 (11)C17—C16—H16B109.3
N3—C8—C13113.26 (12)C15—C16—H16B109.3
C9—C8—C13111.99 (13)H16A—C16—H16B107.9
N3—C8—H8A106.7C16—C17—C18110.80 (13)
C9—C8—H8A106.7C16—C17—H17A109.5
C13—C8—H8A106.7C18—C17—H17A109.5
C8—C9—C10110.91 (12)C16—C17—H17B109.5
C8—C9—H9A109.5C18—C17—H17B109.5
C10—C9—H9A109.5H17A—C17—H17B108.1
C8—C9—H9B109.5C17—C18—C19111.27 (12)
C10—C9—H9B109.5C17—C18—H18A109.4
H9A—C9—H9B108.0C19—C18—H18A109.4
C11—C10—C9110.78 (14)C17—C18—H18C109.4
C11—C10—H10A109.5C19—C18—H18C109.4
C9—C10—H10A109.5H18A—C18—H18C108.0
C11—C10—H10B109.5C14—C19—C18109.64 (13)
C9—C10—H10B109.5C14—C19—H19C109.7
H10A—C10—H10B108.1C18—C19—H19C109.7
C12—C11—C10110.67 (14)C14—C19—H19A109.7
C12—C11—H11A109.5C18—C19—H19A109.7
C10—C11—H11A109.5H19C—C19—H19A108.2
O2—N1—C1—C2−1.2 (2)C6—C5—C7—N3124.80 (15)
O1—N1—C1—C2177.97 (13)C4—C5—C7—N3−65.11 (19)
O2—N1—C1—C6178.46 (14)C7—N3—C8—C9−60.72 (17)
O1—N1—C1—C6−2.4 (2)C14—N3—C8—C9119.11 (14)
C6—C1—C2—C3−0.3 (2)C7—N3—C8—C1366.24 (17)
N1—C1—C2—C3179.38 (12)C14—N3—C8—C13−113.94 (14)
C1—C2—C3—C42.5 (2)N3—C8—C9—C10−177.25 (12)
C1—C2—C3—N2−175.35 (13)C13—C8—C9—C1055.10 (17)
O3—N2—C3—C24.5 (2)C8—C9—C10—C11−56.00 (18)
O4—N2—C3—C2−175.30 (13)C9—C10—C11—C1257.49 (18)
O3—N2—C3—C4−173.47 (13)C10—C11—C12—C13−57.87 (19)
O4—N2—C3—C46.7 (2)N3—C8—C13—C12178.94 (12)
C2—C3—C4—C5−1.8 (2)C9—C8—C13—C12−54.65 (17)
N2—C3—C4—C5176.03 (13)C11—C12—C13—C855.91 (18)
C3—C4—C5—C6−1.2 (2)C7—N3—C14—C19113.34 (15)
C3—C4—C5—C7−171.14 (13)C8—N3—C14—C19−66.48 (16)
C2—C1—C6—C5−2.6 (2)C7—N3—C14—C15−121.37 (14)
N1—C1—C6—C5177.76 (13)C8—N3—C14—C1558.81 (16)
C4—C5—C6—C13.3 (2)N3—C14—C15—C16177.61 (12)
C7—C5—C6—C1173.39 (13)C19—C14—C15—C16−56.51 (16)
C14—N3—C7—O5168.10 (14)C14—C15—C16—C1754.76 (16)
C8—N3—C7—O5−12.1 (2)C15—C16—C17—C18−54.88 (17)
C14—N3—C7—C5−14.2 (2)C16—C17—C18—C1956.63 (18)
C8—N3—C7—C5165.61 (13)N3—C14—C19—C18−176.37 (11)
C6—C5—C7—O5−57.32 (19)C15—C14—C19—C1858.03 (15)
C4—C5—C7—O5112.77 (16)C17—C18—C19—C14−58.10 (17)
D—H···AD—HH···AD···AD—H···A
C9—H9A···O50.992.463.050 (2)118
C13—H13B···O50.992.403.0043 (18)119
C4—H4A···O4i0.952.563.418 (2)151
C16—H16B···O3ii0.992.583.468 (2)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4A⋯O4i 0.952.563.418 (2)151
C16—H16B⋯O3ii 0.992.583.468 (2)149

Symmetry codes: (i) ; (ii) .

  5 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and characterization of novel 6-fluoro-4-piperidinyl-1,2-benzisoxazole amides and 6-fluoro-chroman-2-carboxamides: antimicrobial studies.

Authors:  B S Priya; S Nanjunda Swamy; Kanchugarakoppal S Rangappa
Journal:  Bioorg Med Chem       Date:  2005-04-01       Impact factor: 3.641

4.  N-(4-Bromo-phen-yl)-4-nitro-benzamide.

Authors:  Sohail Saeed; Jerry P Jasinski; Ray J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-08

5.  N,N-Dicyclo-hexyl-4-nitro-benzamide.

Authors:  Sohail Saeed; Naghmana Rashid; Ray J Butcher; Sema Oztürk Yildirim; Rizwan Hussain
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-25
  5 in total

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