Literature DB >> 23125720

Acetyl-ene-ammonia-18-crown-6 (1/2/1).

Tobias Grassl1, Markus Hamberger, Nikolaus Korber.   

Abstract

The title compound, C(2)H(2)·C(12)H(24)O(6)·2NH(3), was formed by co-crystallization of 18-crown-6 and acetyl-ene in liquid ammonia. The 18-crown-6 mol-ecule has threefold rotoinversion symmetry. The acteylene mol-ecule lies on the threefold axis and the whole mol-ecule is generated by an inversion center. The two ammonia mol-ecules are also located on the threefold axis and are related by inversion symmetry. In the crystal, the ammonia mol-ecules are located below and above the crown ether plane and are connected by inter-molecular N-H⋯O hydrogen bonds. The acetyl-ene mol-ecules are additionally linked by weak C-H⋯N inter-actions into chains that propagate in the direction of the crystallographic c axis. The 18-crown-6 mol-ecule [occupancy ratio 0.830 (4):0.170 (4)] is disordered and was refined using a split model.

Entities:  

Year:  2012        PMID: 23125720      PMCID: PMC3470307          DOI: 10.1107/S1600536812038792

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For weak inter­molecular inter­actions such as hydrogen bonds and their application in crystal engineering, see: Desiraju (2002 ▶, 2007 ▶); Boese et al. (2003 ▶, 2009 ▶); Kirchner et al. (2004 ▶); Steiner (2002 ▶)

Experimental

Crystal data

C2H2·C12H24O6·2NH3 M = 324.42 Trigonal, a = 11.8915 (1) Å c = 11.5736 (2) Å V = 1417.33 (3) Å3 Z = 3 Cu Kα radiation μ = 0.73 mm−1 T = 123 K 0.1 × 0.1 × 0.1 mm

Data collection

Oxford Diffraction SuperNova diffractometer Absorption correction: analytical [CrysAlis PRO (Agilent, 2012 ▶), based on expressions derived by Clark & Reid (1995 ▶)] T min = 0.798, T max = 0.841 5835 measured reflections 640 independent reflections 598 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.100 S = 1.11 640 reflections 53 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: olex2.solve (Bourhis et al., 2012 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, H, 2011 ▶); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812038792/nc2288sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812038792/nc2288Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812038792/nc2288Isup3.mol Supplementary material file. DOI: 10.1107/S1600536812038792/nc2288Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C2H2·C12H24O6·2NH3Dx = 1.140 Mg m3
Mr = 324.42Cu Kα radiation, λ = 1.54184 Å
Trigonal, R3Cell parameters from 3585 reflections
Hall symbol: -R 3θ = 5.8–73.3°
a = 11.8915 (1) ŵ = 0.73 mm1
c = 11.5736 (2) ÅT = 123 K
V = 1417.33 (3) Å3Block, clear colourless
Z = 30.1 × 0.1 × 0.1 mm
F(000) = 534
Oxford Diffraction SuperNova diffractometer640 independent reflections
Radiation source: fine-focus sealed tube598 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
ω scansθmax = 73.3°, θmin = 5.8°
Absorption correction: analytical [CrysAlis PRO (Agilent, 2012), based on expressions derived by Clark & Reid (1995)]h = −14→14
Tmin = 0.798, Tmax = 0.841k = −14→14
5835 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: iterative
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0481P)2 + 0.8298P] where P = (Fo2 + 2Fc2)/3
640 reflections(Δ/σ)max < 0.001
53 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.19 e Å3
Experimental. Absorption correction: Crysalis Pro, Agilent Technologies, Version 1.171.35.21, Analytical numeric absorption correction using a multifaceted crystal model based on expressions derived by R. C. Clark & J. S. Reid (1995).Crystal mounting in perfluorether
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.34988 (11)0.43774 (10)0.64475 (7)0.0298 (4)0.830 (4)
C20.23519 (11)0.32279 (10)0.67833 (11)0.0387 (4)
H2AA0.23140.31640.76370.046*0.830 (4)
H2AB0.23750.24630.64760.046*0.830 (4)
H2BC0.19120.24730.73090.046*0.170 (4)
H2BD0.22250.28800.59870.046*0.170 (4)
C30.46325 (13)0.45185 (13)0.69816 (12)0.0344 (4)0.830 (4)
H3B0.47110.37430.68190.041*0.830 (4)
H3A0.45680.45860.78290.041*0.830 (4)
O1A0.4390 (5)0.5013 (5)0.6463 (3)0.0254 (17)0.170 (4)
C3A0.3587 (6)0.3803 (6)0.7006 (6)0.0312 (12)0.17
H3AB0.39050.32060.67860.037*0.170 (4)
H3AA0.37000.39340.78520.037*0.170 (4)
N10.33330.66670.50242 (13)0.0330 (4)
H1A0.34300.60460.53400.040*
C10.33330.66670.21796 (16)0.0289 (4)
H10.33330.66670.30000.035*
U11U22U33U12U13U23
O10.0306 (8)0.0310 (6)0.0287 (5)0.0160 (5)0.0010 (4)0.0042 (4)
C20.0397 (7)0.0276 (6)0.0487 (7)0.0168 (5)0.0111 (5)0.0046 (4)
C30.0379 (8)0.0347 (7)0.0359 (8)0.0220 (7)−0.0045 (5)−0.0002 (5)
O1A0.027 (3)0.029 (3)0.022 (2)0.016 (2)−0.0035 (16)0.0004 (17)
C3A0.027 (3)0.029 (3)0.040 (3)0.016 (3)−0.002 (2)0.000 (3)
N10.0363 (6)0.0363 (6)0.0263 (7)0.0182 (3)0.0000.000
C10.0257 (5)0.0257 (5)0.0351 (8)0.0129 (3)0.0000.000
O1—C21.4196 (15)C3—H3B0.9900
O1—C31.4148 (18)C3—H3A0.9900
C2—H2AA0.9900O1A—C2ii1.446 (5)
C2—H2AB0.9900O1A—C3A1.416 (8)
C2—H2BC0.9900C3A—H3AB0.9900
C2—H2BD0.9900C3A—H3AA0.9900
C2—C3i1.4698 (18)N1—H1A0.8810
C2—O1Ai1.446 (5)C1—C1iii1.187 (4)
C2—C3A1.298 (6)C1—H10.9500
C3—C2ii1.4698 (18)
C3—O1—C2113.22 (10)C3A—C2—H2BC107.5
O1—C2—H2AA109.4C3A—C2—H2BD107.5
O1—C2—H2AB109.4C3A—C2—C3i152.4 (3)
O1—C2—H2BC149.2C3A—C2—O1Ai119.3 (3)
O1—C2—H2BD91.2O1—C3—C2ii110.55 (11)
O1—C2—C3i111.27 (10)O1—C3—H3B109.5
O1—C2—O1Ai89.71 (18)O1—C3—H3A109.5
H2AA—C2—H2AB108.0C2ii—C3—H3B109.5
H2BC—C2—H2BD107.0C2ii—C3—H3A109.5
C3i—C2—H2AA109.4H3B—C3—H3A108.1
C3i—C2—H2AB109.4C3A—O1A—C2ii122.5 (4)
C3i—C2—H2BC97.7C2—C3A—O1A117.3 (5)
C3i—C2—H2BD74.6C2—C3A—H3AB108.0
O1Ai—C2—H2AA87.6C2—C3A—H3AA108.0
O1Ai—C2—H2AB148.6O1A—C3A—H3AB108.0
O1Ai—C2—H2BC107.5O1A—C3A—H3AA108.0
O1Ai—C2—H2BD107.5H3AB—C3A—H3AA107.2
C3A—C2—H2AA80.7C1iii—C1—H1180.0
C3A—C2—H2AB90.6
D—H···AD—HH···AD···AD—H···A
N1—H1A···O10.882.403.2709 (12)171
N1—H1A···O1A0.882.433.270 (4)159
C1—H1···N10.952.343.292 (2)180
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O10.882.403.2709 (12)171
N1—H1A⋯O1A 0.882.433.270 (4)159
C1—H1⋯N10.952.343.292 (2)180
  4 in total

1.  Crystal engineering: a holistic view.

Authors:  Gautam R Desiraju
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and theoretical characterization of an acetylene-ammonia cocrystal.

Authors:  Roland Boese; Dieter Bläser; Georg Jansen
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

Review 4.  Hydrogen bridges in crystal engineering: interactions without borders.

Authors:  Gautam R Desiraju
Journal:  Acc Chem Res       Date:  2002-07       Impact factor: 22.384

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