Literature DB >> 23125702

6-(4-Meth-oxy-phen-yl)-1,3,5-triazine-2,4-diamine.

Kaliyaperumal Thanigaimani1, Ibrahim Abdul Razak, Suhana Arshad, Rathinavel Jagatheesan, K Joseph Santhanaraj.   

Abstract

In the title compound, C(10)H(11)N(5)O, the triazine ring forms a dihedral angle of 10.37 (4)° with the benzene ring. In the crystal, adjacent mol-ecules are linked by a pair of N-H⋯N hydrogen bonds, forming an inversion dimer with an R(2) (2)(8) ring motif. The dimers are further connected via N-H⋯O and N-H⋯N hydrogen bonds, resulting in a three-dimensional network.

Entities:  

Year:  2012        PMID: 23125702      PMCID: PMC3470258          DOI: 10.1107/S1600536812038019

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of triazine derivatives, see: Bork et al. (2003 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C10H11N5O M = 217.24 Monoclinic, a = 7.4340 (2) Å b = 10.0355 (3) Å c = 14.6803 (4) Å β = 114.191 (1)° V = 999.03 (5) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.73 × 0.49 × 0.15 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.930, T max = 0.985 16310 measured reflections 3611 independent reflections 3112 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.121 S = 1.07 3611 reflections 162 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.50 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812038019/is5191sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812038019/is5191Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812038019/is5191Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H11N5OF(000) = 456
Mr = 217.24Dx = 1.444 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7910 reflections
a = 7.4340 (2) Åθ = 2.5–32.5°
b = 10.0355 (3) ŵ = 0.10 mm1
c = 14.6803 (4) ÅT = 100 K
β = 114.191 (1)°Plate, colourless
V = 999.03 (5) Å30.73 × 0.49 × 0.15 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3611 independent reflections
Radiation source: fine-focus sealed tube3112 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
φ and ω scansθmax = 32.6°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→11
Tmin = 0.930, Tmax = 0.985k = −15→14
16310 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0686P)2 + 0.2052P] where P = (Fo2 + 2Fc2)/3
3611 reflections(Δ/σ)max < 0.001
162 parametersΔρmax = 0.50 e Å3
0 restraintsΔρmin = −0.26 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.35597 (9)0.64750 (7)0.95775 (5)0.01650 (14)
N10.89236 (10)0.73352 (7)0.71745 (5)0.01370 (14)
N21.14046 (11)0.80754 (8)0.67477 (6)0.01588 (15)
N30.98420 (10)0.61218 (7)0.60228 (5)0.01364 (14)
N40.81934 (12)0.41721 (8)0.53671 (6)0.01771 (16)
N50.74625 (11)0.52210 (7)0.65619 (5)0.01434 (15)
C21.00276 (12)0.71420 (8)0.66483 (6)0.01287 (15)
C40.85102 (12)0.51935 (8)0.59951 (6)0.01342 (15)
C60.76980 (11)0.63268 (8)0.71082 (6)0.01251 (15)
C70.65370 (12)0.63948 (8)0.77219 (6)0.01286 (15)
C80.50541 (12)0.54629 (9)0.75799 (6)0.01468 (16)
H8A0.47490.48240.70610.018*
C90.40092 (12)0.54448 (8)0.81785 (6)0.01421 (16)
H9A0.30150.47960.80780.017*
C100.44520 (12)0.63999 (8)0.89293 (6)0.01308 (15)
C110.59087 (12)0.73581 (9)0.90702 (6)0.01452 (16)
H11A0.61820.80160.95750.017*
C120.69527 (12)0.73512 (8)0.84777 (6)0.01394 (16)
H12A0.79540.79960.85830.017*
C130.19727 (13)0.55633 (10)0.94259 (7)0.01802 (17)
H13A0.14880.56970.99470.027*
H13B0.24480.46460.94570.027*
H13C0.09000.57240.87700.027*
H2A1.236 (2)0.7853 (15)0.6551 (11)0.031 (4)*
H2B1.1747 (19)0.8611 (14)0.7264 (10)0.023 (3)*
H4A0.882 (2)0.4077 (15)0.4965 (11)0.029 (3)*
H4B0.739 (2)0.3525 (15)0.5360 (11)0.030 (4)*
U11U22U33U12U13U23
O10.0177 (3)0.0169 (3)0.0189 (3)−0.0022 (2)0.0116 (2)−0.0023 (2)
N10.0149 (3)0.0116 (3)0.0165 (3)−0.0003 (2)0.0083 (2)−0.0002 (2)
N20.0171 (3)0.0136 (3)0.0197 (3)−0.0030 (3)0.0103 (3)−0.0022 (3)
N30.0151 (3)0.0123 (3)0.0149 (3)−0.0006 (2)0.0075 (2)0.0002 (2)
N40.0216 (3)0.0152 (3)0.0216 (3)−0.0053 (3)0.0143 (3)−0.0051 (3)
N50.0163 (3)0.0121 (3)0.0174 (3)−0.0008 (3)0.0098 (3)−0.0011 (2)
C20.0131 (3)0.0114 (3)0.0139 (3)0.0015 (3)0.0054 (3)0.0021 (3)
C40.0146 (3)0.0120 (3)0.0143 (3)0.0013 (3)0.0064 (3)0.0008 (3)
C60.0128 (3)0.0111 (3)0.0137 (3)0.0014 (3)0.0055 (3)0.0013 (3)
C70.0134 (3)0.0108 (3)0.0154 (3)0.0011 (3)0.0070 (3)0.0002 (3)
C80.0156 (3)0.0128 (3)0.0170 (3)−0.0004 (3)0.0081 (3)−0.0025 (3)
C90.0137 (3)0.0122 (3)0.0177 (3)−0.0007 (3)0.0074 (3)−0.0007 (3)
C100.0130 (3)0.0128 (3)0.0145 (3)0.0020 (3)0.0066 (3)0.0012 (3)
C110.0159 (3)0.0133 (4)0.0154 (3)−0.0009 (3)0.0074 (3)−0.0025 (3)
C120.0139 (3)0.0119 (3)0.0168 (3)−0.0003 (3)0.0069 (3)−0.0004 (3)
C130.0157 (3)0.0206 (4)0.0199 (4)−0.0016 (3)0.0095 (3)0.0022 (3)
O1—C101.3669 (10)C6—C71.4826 (11)
O1—C131.4364 (11)C7—C81.3946 (12)
N1—C61.3384 (11)C7—C121.4025 (12)
N1—C21.3517 (10)C8—C91.3911 (11)
N2—C21.3507 (11)C8—H8A0.9500
N2—H2A0.896 (15)C9—C101.3945 (12)
N2—H2B0.877 (14)C9—H9A0.9500
N3—C21.3441 (11)C10—C111.3988 (12)
N3—C41.3479 (11)C11—C121.3828 (11)
N4—C41.3335 (11)C11—H11A0.9500
N4—H4A0.896 (15)C12—H12A0.9500
N4—H4B0.878 (15)C13—H13A0.9800
N5—C61.3380 (11)C13—H13B0.9800
N5—C41.3530 (10)C13—H13C0.9800
C10—O1—C13117.33 (7)C9—C8—C7121.75 (8)
C6—N1—C2113.87 (7)C9—C8—H8A119.1
C2—N2—H2A117.2 (10)C7—C8—H8A119.1
C2—N2—H2B117.2 (9)C8—C9—C10118.57 (8)
H2A—N2—H2B116.3 (13)C8—C9—H9A120.7
C2—N3—C4114.56 (7)C10—C9—H9A120.7
C4—N4—H4A123.0 (10)O1—C10—C9124.29 (7)
C4—N4—H4B120.3 (9)O1—C10—C11115.23 (7)
H4A—N4—H4B116.6 (13)C9—C10—C11120.47 (7)
C6—N5—C4114.75 (7)C12—C11—C10120.24 (8)
N3—C2—N2117.59 (7)C12—C11—H11A119.9
N3—C2—N1125.68 (7)C10—C11—H11A119.9
N2—C2—N1116.72 (7)C11—C12—C7120.17 (8)
N4—C4—N3118.14 (7)C11—C12—H12A119.9
N4—C4—N5117.24 (7)C7—C12—H12A119.9
N3—C4—N5124.62 (8)O1—C13—H13A109.5
N5—C6—N1126.06 (7)O1—C13—H13B109.5
N5—C6—C7115.89 (7)H13A—C13—H13B109.5
N1—C6—C7118.00 (7)O1—C13—H13C109.5
C8—C7—C12118.78 (7)H13A—C13—H13C109.5
C8—C7—C6119.98 (7)H13B—C13—H13C109.5
C12—C7—C6121.18 (7)
D—H···AD—HH···AD···AD—H···A
N2—H2B···N5i0.878 (14)2.258 (14)3.1291 (11)172.1 (12)
N4—H4A···N3ii0.894 (16)2.077 (16)2.9708 (12)177.4 (14)
N4—H4B···O1iii0.879 (16)2.189 (15)3.0196 (11)157.3 (14)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2B⋯N5i 0.878 (14)2.258 (14)3.1291 (11)172.1 (12)
N4—H4A⋯N3ii 0.894 (16)2.077 (16)2.9708 (12)177.4 (14)
N4—H4B⋯O1iii 0.879 (16)2.189 (15)3.0196 (11)157.3 (14)

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  Novel orthogonal strategy toward solid-phase synthesis of 1,3,5-substituted triazines.

Authors:  Jacqueline T Bork; Jae Wook Lee; Sonya M Khersonsky; Ho-Sang Moon; Young-Tae Chang
Journal:  Org Lett       Date:  2003-01-23       Impact factor: 6.005

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  1 in total

1.  6-(4-Methyl-phen-yl)-1,3,5-triazine-2,4-di-amine-benzoic acid (1/1).

Authors:  Kaliyaperumal Thanigaimani; Nuridayanti Che Khalib; Ibrahim Abdul Razak; Palanisamy Lavanya; Kasthuri Balasubramani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-25
  1 in total

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