| Literature DB >> 23125702 |
Kaliyaperumal Thanigaimani1, Ibrahim Abdul Razak, Suhana Arshad, Rathinavel Jagatheesan, K Joseph Santhanaraj.
Abstract
In the title compound, C(10)H(11)N(5)O, the triazine ring forms a dihedral angle of 10.37 (4)° with the benzene ring. In the crystal, adjacent mol-ecules are linked by a pair of N-H⋯N hydrogen bonds, forming an inversion dimer with an R(2) (2)(8) ring motif. The dimers are further connected via N-H⋯O and N-H⋯N hydrogen bonds, resulting in a three-dimensional network.Entities:
Year: 2012 PMID: 23125702 PMCID: PMC3470258 DOI: 10.1107/S1600536812038019
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H11N5O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 7910 reflections |
| θ = 2.5–32.5° | |
| µ = 0.10 mm−1 | |
| β = 114.191 (1)° | Plate, colourless |
| 0.73 × 0.49 × 0.15 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 3611 independent reflections |
| Radiation source: fine-focus sealed tube | 3112 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 32.6°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 16310 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3611 reflections | (Δ/σ)max < 0.001 |
| 162 parameters | Δρmax = 0.50 e Å−3 |
| 0 restraints | Δρmin = −0.26 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.35597 (9) | 0.64750 (7) | 0.95775 (5) | 0.01650 (14) | |
| N1 | 0.89236 (10) | 0.73352 (7) | 0.71745 (5) | 0.01370 (14) | |
| N2 | 1.14046 (11) | 0.80754 (8) | 0.67477 (6) | 0.01588 (15) | |
| N3 | 0.98420 (10) | 0.61218 (7) | 0.60228 (5) | 0.01364 (14) | |
| N4 | 0.81934 (12) | 0.41721 (8) | 0.53671 (6) | 0.01771 (16) | |
| N5 | 0.74625 (11) | 0.52210 (7) | 0.65619 (5) | 0.01434 (15) | |
| C2 | 1.00276 (12) | 0.71420 (8) | 0.66483 (6) | 0.01287 (15) | |
| C4 | 0.85102 (12) | 0.51935 (8) | 0.59951 (6) | 0.01342 (15) | |
| C6 | 0.76980 (11) | 0.63268 (8) | 0.71082 (6) | 0.01251 (15) | |
| C7 | 0.65370 (12) | 0.63948 (8) | 0.77219 (6) | 0.01286 (15) | |
| C8 | 0.50541 (12) | 0.54629 (9) | 0.75799 (6) | 0.01468 (16) | |
| H8A | 0.4749 | 0.4824 | 0.7061 | 0.018* | |
| C9 | 0.40092 (12) | 0.54448 (8) | 0.81785 (6) | 0.01421 (16) | |
| H9A | 0.3015 | 0.4796 | 0.8078 | 0.017* | |
| C10 | 0.44520 (12) | 0.63999 (8) | 0.89293 (6) | 0.01308 (15) | |
| C11 | 0.59087 (12) | 0.73581 (9) | 0.90702 (6) | 0.01452 (16) | |
| H11A | 0.6182 | 0.8016 | 0.9575 | 0.017* | |
| C12 | 0.69527 (12) | 0.73512 (8) | 0.84777 (6) | 0.01394 (16) | |
| H12A | 0.7954 | 0.7996 | 0.8583 | 0.017* | |
| C13 | 0.19727 (13) | 0.55633 (10) | 0.94259 (7) | 0.01802 (17) | |
| H13A | 0.1488 | 0.5697 | 0.9947 | 0.027* | |
| H13B | 0.2448 | 0.4646 | 0.9457 | 0.027* | |
| H13C | 0.0900 | 0.5724 | 0.8770 | 0.027* | |
| H2A | 1.236 (2) | 0.7853 (15) | 0.6551 (11) | 0.031 (4)* | |
| H2B | 1.1747 (19) | 0.8611 (14) | 0.7264 (10) | 0.023 (3)* | |
| H4A | 0.882 (2) | 0.4077 (15) | 0.4965 (11) | 0.029 (3)* | |
| H4B | 0.739 (2) | 0.3525 (15) | 0.5360 (11) | 0.030 (4)* |
| O1 | 0.0177 (3) | 0.0169 (3) | 0.0189 (3) | −0.0022 (2) | 0.0116 (2) | −0.0023 (2) |
| N1 | 0.0149 (3) | 0.0116 (3) | 0.0165 (3) | −0.0003 (2) | 0.0083 (2) | −0.0002 (2) |
| N2 | 0.0171 (3) | 0.0136 (3) | 0.0197 (3) | −0.0030 (3) | 0.0103 (3) | −0.0022 (3) |
| N3 | 0.0151 (3) | 0.0123 (3) | 0.0149 (3) | −0.0006 (2) | 0.0075 (2) | 0.0002 (2) |
| N4 | 0.0216 (3) | 0.0152 (3) | 0.0216 (3) | −0.0053 (3) | 0.0143 (3) | −0.0051 (3) |
| N5 | 0.0163 (3) | 0.0121 (3) | 0.0174 (3) | −0.0008 (3) | 0.0098 (3) | −0.0011 (2) |
| C2 | 0.0131 (3) | 0.0114 (3) | 0.0139 (3) | 0.0015 (3) | 0.0054 (3) | 0.0021 (3) |
| C4 | 0.0146 (3) | 0.0120 (3) | 0.0143 (3) | 0.0013 (3) | 0.0064 (3) | 0.0008 (3) |
| C6 | 0.0128 (3) | 0.0111 (3) | 0.0137 (3) | 0.0014 (3) | 0.0055 (3) | 0.0013 (3) |
| C7 | 0.0134 (3) | 0.0108 (3) | 0.0154 (3) | 0.0011 (3) | 0.0070 (3) | 0.0002 (3) |
| C8 | 0.0156 (3) | 0.0128 (3) | 0.0170 (3) | −0.0004 (3) | 0.0081 (3) | −0.0025 (3) |
| C9 | 0.0137 (3) | 0.0122 (3) | 0.0177 (3) | −0.0007 (3) | 0.0074 (3) | −0.0007 (3) |
| C10 | 0.0130 (3) | 0.0128 (3) | 0.0145 (3) | 0.0020 (3) | 0.0066 (3) | 0.0012 (3) |
| C11 | 0.0159 (3) | 0.0133 (4) | 0.0154 (3) | −0.0009 (3) | 0.0074 (3) | −0.0025 (3) |
| C12 | 0.0139 (3) | 0.0119 (3) | 0.0168 (3) | −0.0003 (3) | 0.0069 (3) | −0.0004 (3) |
| C13 | 0.0157 (3) | 0.0206 (4) | 0.0199 (4) | −0.0016 (3) | 0.0095 (3) | 0.0022 (3) |
| O1—C10 | 1.3669 (10) | C6—C7 | 1.4826 (11) |
| O1—C13 | 1.4364 (11) | C7—C8 | 1.3946 (12) |
| N1—C6 | 1.3384 (11) | C7—C12 | 1.4025 (12) |
| N1—C2 | 1.3517 (10) | C8—C9 | 1.3911 (11) |
| N2—C2 | 1.3507 (11) | C8—H8A | 0.9500 |
| N2—H2A | 0.896 (15) | C9—C10 | 1.3945 (12) |
| N2—H2B | 0.877 (14) | C9—H9A | 0.9500 |
| N3—C2 | 1.3441 (11) | C10—C11 | 1.3988 (12) |
| N3—C4 | 1.3479 (11) | C11—C12 | 1.3828 (11) |
| N4—C4 | 1.3335 (11) | C11—H11A | 0.9500 |
| N4—H4A | 0.896 (15) | C12—H12A | 0.9500 |
| N4—H4B | 0.878 (15) | C13—H13A | 0.9800 |
| N5—C6 | 1.3380 (11) | C13—H13B | 0.9800 |
| N5—C4 | 1.3530 (10) | C13—H13C | 0.9800 |
| C10—O1—C13 | 117.33 (7) | C9—C8—C7 | 121.75 (8) |
| C6—N1—C2 | 113.87 (7) | C9—C8—H8A | 119.1 |
| C2—N2—H2A | 117.2 (10) | C7—C8—H8A | 119.1 |
| C2—N2—H2B | 117.2 (9) | C8—C9—C10 | 118.57 (8) |
| H2A—N2—H2B | 116.3 (13) | C8—C9—H9A | 120.7 |
| C2—N3—C4 | 114.56 (7) | C10—C9—H9A | 120.7 |
| C4—N4—H4A | 123.0 (10) | O1—C10—C9 | 124.29 (7) |
| C4—N4—H4B | 120.3 (9) | O1—C10—C11 | 115.23 (7) |
| H4A—N4—H4B | 116.6 (13) | C9—C10—C11 | 120.47 (7) |
| C6—N5—C4 | 114.75 (7) | C12—C11—C10 | 120.24 (8) |
| N3—C2—N2 | 117.59 (7) | C12—C11—H11A | 119.9 |
| N3—C2—N1 | 125.68 (7) | C10—C11—H11A | 119.9 |
| N2—C2—N1 | 116.72 (7) | C11—C12—C7 | 120.17 (8) |
| N4—C4—N3 | 118.14 (7) | C11—C12—H12A | 119.9 |
| N4—C4—N5 | 117.24 (7) | C7—C12—H12A | 119.9 |
| N3—C4—N5 | 124.62 (8) | O1—C13—H13A | 109.5 |
| N5—C6—N1 | 126.06 (7) | O1—C13—H13B | 109.5 |
| N5—C6—C7 | 115.89 (7) | H13A—C13—H13B | 109.5 |
| N1—C6—C7 | 118.00 (7) | O1—C13—H13C | 109.5 |
| C8—C7—C12 | 118.78 (7) | H13A—C13—H13C | 109.5 |
| C8—C7—C6 | 119.98 (7) | H13B—C13—H13C | 109.5 |
| C12—C7—C6 | 121.18 (7) |
| H··· | ||||
| N2—H2 | 0.878 (14) | 2.258 (14) | 3.1291 (11) | 172.1 (12) |
| N4—H4 | 0.894 (16) | 2.077 (16) | 2.9708 (12) | 177.4 (14) |
| N4—H4 | 0.879 (16) | 2.189 (15) | 3.0196 (11) | 157.3 (14) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2 | 0.878 (14) | 2.258 (14) | 3.1291 (11) | 172.1 (12) |
| N4—H4 | 0.894 (16) | 2.077 (16) | 2.9708 (12) | 177.4 (14) |
| N4—H4 | 0.879 (16) | 2.189 (15) | 3.0196 (11) | 157.3 (14) |
Symmetry codes: (i) ; (ii) ; (iii) .