Literature DB >> 23125695

Methyl (3S,3'R)-1-methyl-2,2''-dioxo-1',2',3',5',6',7',8',8a'-octa-hydro-dispiro-[indoline-3,2'-indolizine-3',3''-indoline]-1'-carboxyl-ate.

G Ganesh1, Panneer Selvam Yuvaraj, E Govindan, Boreddy S R Reddy, A Subbiahpandi.   

Abstract

In the title compound, C(25)H(25)N(n class="Chemical">3)O(4), the central pyrrolidine ring and the two pyrrolidine rings adopt twisted conformations, whereas the piperidine ring in the octa-hydro-indolizine fused ring system adopts a chair conformation. The indoline ring systems are almost perpendicular with respect to the mean plane of the octa-hydro-indolizine ring system, making dihedral angles of 84.4 (5) and 79.4 (5)°. The acetate group attached to the octa-hydro-indolizine ring system assumes an extended conformation. In the crystal, N-H⋯O hydrogen bonds result in the formation of a helical C(7) chain running parallel to [101]. The crystal packing features C-H⋯O hydrogen bonds and C-H⋯π inter-actions.

Entities:  

Year:  2012        PMID: 23125695      PMCID: PMC3470251          DOI: 10.1107/S1600536812037531

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of compounds with spiro-pyrrolidine ring systems, see: Sundar et al. (2011 ▶); Crooks & Sommerville (1982 ▶); Stylianakis et al. (2003 ▶). For a related structure, see: Selvanayagam et al. (2012 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For asymmetry parameters, see: n class="Chemical">Nardelli et al. (1983 ▶).

Experimental

Crystal data

C25H25N3O4 M = 431.48 Monoclinic, a = 10.0516 (3) Å b = 17.9539 (6) Å c = 12.4471 (4) Å β = 105.347 (2)° V = 2166.17 (12) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.25 × 0.22 × 0.19 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.978, T max = 0.983 27282 measured reflections 6752 independent reflections 4374 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.143 S = 1.03 6752 reflections 291 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812037531/zl2499sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812037531/zl2499Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H25N3O4F(000) = 912
Mr = 431.48Dx = 1.323 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6752 reflections
a = 10.0516 (3) Åθ = 2.0–31.0°
b = 17.9539 (6) ŵ = 0.09 mm1
c = 12.4471 (4) ÅT = 293 K
β = 105.347 (2)°Block, white crystalline
V = 2166.17 (12) Å30.25 × 0.22 × 0.19 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer6752 independent reflections
Radiation source: fine-focus sealed tube4374 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
ω and φ scansθmax = 31.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −14→14
Tmin = 0.978, Tmax = 0.983k = −25→25
27282 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.143H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0675P)2 + 0.2828P] where P = (Fo2 + 2Fc2)/3
6752 reflections(Δ/σ)max < 0.001
291 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.39509 (15)0.18055 (7)0.38847 (13)0.0389 (3)
H1A0.36610.17860.30770.047*
H1B0.35200.13940.41720.047*
C20.55128 (16)0.17364 (9)0.42873 (14)0.0475 (4)
H2A0.57830.16910.50920.057*
H2B0.58030.12880.39790.057*
C30.62352 (16)0.24026 (9)0.39500 (16)0.0528 (4)
H3A0.60720.24110.31460.063*
H3B0.72220.23620.42790.063*
C40.57047 (14)0.31205 (8)0.43361 (14)0.0421 (3)
H4A0.59540.31370.51440.051*
H4B0.61250.35450.40710.051*
C50.41569 (13)0.31611 (7)0.38920 (11)0.0312 (3)
H50.38980.31830.30760.037*
C60.20445 (12)0.26486 (7)0.39870 (10)0.0296 (3)
C70.19738 (12)0.35157 (7)0.42780 (10)0.0287 (3)
C80.34676 (13)0.37893 (7)0.43616 (11)0.0314 (3)
H80.39360.38150.51590.038*
C90.35351 (14)0.45585 (7)0.39114 (14)0.0411 (3)
C110.14592 (16)0.18861 (8)0.56175 (13)0.0434 (3)
H110.22420.20330.61610.052*
C120.04945 (18)0.14130 (9)0.58827 (16)0.0545 (4)
H120.06240.12520.66130.065*
C13−0.06500 (17)0.11821 (9)0.50720 (17)0.0571 (5)
H13−0.12900.08720.52680.068*
C14−0.08675 (15)0.14005 (8)0.39767 (15)0.0475 (4)
H14−0.16280.12330.34280.057*
C150.00836 (13)0.18761 (7)0.37260 (12)0.0357 (3)
C160.12326 (13)0.21318 (7)0.45356 (11)0.0332 (3)
C170.12949 (14)0.25295 (7)0.27335 (11)0.0349 (3)
C180.04727 (17)0.41569 (8)0.24454 (12)0.0447 (3)
H180.11020.40810.20270.054*
C19−0.07771 (19)0.45125 (9)0.19857 (15)0.0575 (5)
H19−0.09880.46700.12480.069*
C20−0.17011 (18)0.46340 (10)0.25991 (16)0.0591 (5)
H20−0.25290.48730.22690.071*
C21−0.14357 (15)0.44103 (8)0.36957 (15)0.0485 (4)
H21−0.20650.44950.41120.058*
C22−0.01959 (13)0.40548 (7)0.41489 (12)0.0344 (3)
C230.07557 (13)0.39205 (7)0.35351 (11)0.0325 (3)
C240.16580 (13)0.35799 (7)0.54149 (11)0.0315 (3)
N10.35207 (10)0.25114 (6)0.42717 (9)0.0302 (2)
N20.01226 (12)0.21398 (7)0.26806 (10)0.0399 (3)
H2C−0.05170.20650.20770.048*
N30.03374 (11)0.38133 (6)0.52466 (10)0.0349 (3)
O10.38982 (14)0.45660 (6)0.29638 (11)0.0609 (3)
O20.33032 (14)0.51090 (6)0.43692 (13)0.0672 (4)
O30.16969 (12)0.27330 (6)0.19483 (8)0.0488 (3)
O40.24468 (10)0.34408 (6)0.63171 (8)0.0432 (2)
C25−0.03937 (16)0.38432 (10)0.61061 (14)0.0509 (4)
H25A0.02210.37060.68090.076*
H25B−0.11590.35040.59240.076*
H25C−0.07270.43400.61540.076*
C100.4028 (3)0.52914 (11)0.2504 (2)0.0971 (8)
H10A0.31670.55530.23780.146*
H10B0.42680.52360.18110.146*
H10C0.47370.55690.30170.146*
U11U22U33U12U13U23
C10.0442 (8)0.0309 (6)0.0414 (8)0.0046 (6)0.0107 (6)−0.0048 (6)
C20.0450 (8)0.0427 (8)0.0523 (9)0.0141 (6)0.0088 (7)−0.0067 (7)
C30.0377 (8)0.0529 (9)0.0708 (11)0.0085 (7)0.0194 (8)−0.0090 (8)
C40.0315 (7)0.0413 (7)0.0546 (9)0.0007 (6)0.0134 (6)−0.0045 (7)
C50.0314 (6)0.0300 (6)0.0329 (7)0.0007 (5)0.0099 (5)−0.0019 (5)
C60.0296 (6)0.0300 (6)0.0278 (6)−0.0002 (5)0.0050 (5)−0.0023 (5)
C70.0267 (6)0.0308 (6)0.0269 (6)0.0012 (5)0.0042 (5)−0.0024 (5)
C80.0281 (6)0.0311 (6)0.0345 (7)−0.0006 (5)0.0072 (5)−0.0050 (5)
C90.0332 (7)0.0304 (7)0.0605 (10)−0.0013 (5)0.0137 (7)−0.0040 (6)
C110.0428 (8)0.0429 (8)0.0431 (8)−0.0014 (6)0.0086 (6)0.0068 (6)
C120.0558 (10)0.0529 (9)0.0585 (11)0.0014 (8)0.0218 (8)0.0191 (8)
C130.0422 (9)0.0482 (9)0.0847 (14)−0.0038 (7)0.0235 (9)0.0130 (9)
C140.0323 (7)0.0394 (8)0.0696 (11)−0.0032 (6)0.0114 (7)−0.0023 (7)
C150.0296 (6)0.0304 (6)0.0457 (8)0.0032 (5)0.0073 (6)−0.0040 (6)
C160.0320 (6)0.0295 (6)0.0371 (7)−0.0001 (5)0.0077 (5)−0.0007 (5)
C170.0362 (7)0.0333 (6)0.0312 (7)0.0025 (5)0.0021 (5)−0.0042 (5)
C180.0539 (9)0.0390 (8)0.0361 (8)0.0001 (6)0.0031 (7)0.0017 (6)
C190.0641 (11)0.0469 (9)0.0455 (9)0.0034 (8)−0.0136 (8)0.0082 (7)
C200.0417 (9)0.0468 (9)0.0727 (13)0.0083 (7)−0.0129 (8)0.0059 (8)
C210.0304 (7)0.0407 (8)0.0698 (11)0.0028 (6)0.0053 (7)0.0004 (8)
C220.0288 (6)0.0293 (6)0.0423 (8)−0.0009 (5)0.0046 (6)−0.0011 (5)
C230.0308 (6)0.0299 (6)0.0333 (7)0.0006 (5)0.0020 (5)−0.0005 (5)
C240.0306 (6)0.0311 (6)0.0319 (7)0.0016 (5)0.0067 (5)−0.0028 (5)
N10.0283 (5)0.0279 (5)0.0333 (6)0.0015 (4)0.0061 (4)−0.0021 (4)
N20.0341 (6)0.0414 (6)0.0375 (6)−0.0029 (5)−0.0020 (5)−0.0079 (5)
N30.0319 (6)0.0375 (6)0.0366 (6)0.0026 (5)0.0115 (5)−0.0006 (5)
O10.0904 (9)0.0347 (6)0.0664 (8)−0.0031 (6)0.0362 (7)0.0076 (5)
O20.0742 (8)0.0343 (6)0.1035 (11)0.0019 (5)0.0418 (8)−0.0131 (6)
O30.0554 (6)0.0600 (7)0.0290 (5)−0.0038 (5)0.0078 (5)−0.0021 (5)
O40.0426 (6)0.0548 (6)0.0282 (5)0.0092 (5)0.0024 (4)−0.0019 (4)
C250.0466 (9)0.0592 (10)0.0551 (10)0.0026 (7)0.0280 (8)−0.0015 (8)
C100.149 (2)0.0460 (11)0.110 (2)−0.0063 (13)0.0586 (18)0.0246 (12)
C1—N11.4613 (16)C12—H120.9300
C1—C21.521 (2)C13—C141.379 (3)
C1—H1A0.9700C13—H130.9300
C1—H1B0.9700C14—C151.3778 (19)
C2—C31.515 (2)C14—H140.9300
C2—H2A0.9700C15—C161.394 (2)
C2—H2B0.9700C15—N21.3949 (19)
C3—C41.521 (2)C17—O31.2087 (17)
C3—H3A0.9700C17—N21.3570 (18)
C3—H3B0.9700C18—C231.3772 (19)
C4—C51.5087 (19)C18—C191.390 (2)
C4—H4A0.9700C18—H180.9300
C4—H4B0.9700C19—C201.367 (3)
C5—N11.4672 (15)C19—H190.9300
C5—C81.5193 (16)C20—C211.380 (3)
C5—H50.9800C20—H200.9300
C6—N11.4525 (15)C21—C221.3807 (19)
C6—C161.5126 (17)C21—H210.9300
C6—C171.5574 (19)C22—C231.3942 (18)
C6—C71.6041 (17)C22—N31.3980 (18)
C7—C231.5109 (18)C24—O41.2169 (16)
C7—C241.5344 (17)C24—N31.3543 (16)
C7—C81.5569 (17)N2—H2C0.8600
C8—C91.4987 (18)N3—C251.4503 (17)
C8—H80.9800O1—C101.442 (2)
C9—O21.1942 (17)C25—H25A0.9600
C9—O11.3237 (19)C25—H25B0.9600
C11—C161.378 (2)C25—H25C0.9600
C11—C121.393 (2)C10—H10A0.9600
C11—H110.9300C10—H10B0.9600
C12—C131.378 (3)C10—H10C0.9600
N1—C1—C2109.38 (11)C12—C13—H13119.3
N1—C1—H1A109.8C14—C13—H13119.3
C2—C1—H1A109.8C15—C14—C13117.52 (15)
N1—C1—H1B109.8C15—C14—H14121.2
C2—C1—H1B109.8C13—C14—H14121.2
H1A—C1—H1B108.2C14—C15—C16122.15 (14)
C3—C2—C1111.89 (13)C14—C15—N2127.88 (14)
C3—C2—H2A109.2C16—C15—N2109.88 (12)
C1—C2—H2A109.2C11—C16—C15119.47 (13)
C3—C2—H2B109.2C11—C16—C6131.94 (12)
C1—C2—H2B109.2C15—C16—C6108.57 (12)
H2A—C2—H2B107.9O3—C17—N2126.05 (13)
C2—C3—C4110.35 (12)O3—C17—C6126.30 (12)
C2—C3—H3A109.6N2—C17—C6107.64 (11)
C4—C3—H3A109.6C23—C18—C19118.39 (15)
C2—C3—H3B109.6C23—C18—H18120.8
C4—C3—H3B109.6C19—C18—H18120.8
H3A—C3—H3B108.1C20—C19—C18121.13 (16)
C5—C4—C3109.82 (12)C20—C19—H19119.4
C5—C4—H4A109.7C18—C19—H19119.4
C3—C4—H4A109.7C19—C20—C21121.61 (15)
C5—C4—H4B109.7C19—C20—H20119.2
C3—C4—H4B109.7C21—C20—H20119.2
H4A—C4—H4B108.2C20—C21—C22117.14 (15)
N1—C5—C4109.79 (11)C20—C21—H21121.4
N1—C5—C8100.62 (9)C22—C21—H21121.4
C4—C5—C8115.22 (11)C21—C22—C23122.14 (14)
N1—C5—H5110.3C21—C22—N3127.87 (13)
C4—C5—H5110.3C23—C22—N3109.91 (11)
C8—C5—H5110.3C18—C23—C22119.57 (13)
N1—C6—C16115.10 (10)C18—C23—C7132.35 (12)
N1—C6—C17114.40 (10)C22—C23—C7108.08 (11)
C16—C6—C17101.08 (10)O4—C24—N3125.36 (12)
N1—C6—C7102.30 (9)O4—C24—C7126.32 (11)
C16—C6—C7115.59 (10)N3—C24—C7108.31 (11)
C17—C6—C7108.71 (10)C6—N1—C1116.04 (10)
C23—C7—C24101.32 (10)C6—N1—C5106.90 (10)
C23—C7—C8120.00 (11)C1—N1—C5113.03 (10)
C24—C7—C8110.24 (10)C17—N2—C15111.60 (11)
C23—C7—C6113.94 (10)C17—N2—H2C124.2
C24—C7—C6108.26 (10)C15—N2—H2C124.2
C8—C7—C6102.82 (9)C24—N3—C22110.72 (11)
C9—C8—C5118.03 (11)C24—N3—C25124.37 (13)
C9—C8—C7113.84 (10)C22—N3—C25124.84 (12)
C5—C8—C7105.66 (10)C9—O1—C10115.98 (15)
C9—C8—H8106.2N3—C25—H25A109.5
C5—C8—H8106.2N3—C25—H25B109.5
C7—C8—H8106.2H25A—C25—H25B109.5
O2—C9—O1123.47 (14)N3—C25—H25C109.5
O2—C9—C8123.39 (15)H25A—C25—H25C109.5
O1—C9—C8113.14 (12)H25B—C25—H25C109.5
C16—C11—C12118.79 (15)O1—C10—H10A109.5
C16—C11—H11120.6O1—C10—H10B109.5
C12—C11—H11120.6H10A—C10—H10B109.5
C13—C12—C11120.57 (16)O1—C10—H10C109.5
C13—C12—H12119.7H10A—C10—H10C109.5
C11—C12—H12119.7H10B—C10—H10C109.5
C12—C13—C14121.43 (15)
N1—C1—C2—C3−54.22 (17)C7—C6—C17—N2−111.06 (11)
C1—C2—C3—C453.92 (19)C23—C18—C19—C200.7 (2)
C2—C3—C4—C5−55.34 (18)C18—C19—C20—C210.0 (3)
C3—C4—C5—N158.10 (15)C19—C20—C21—C22−0.2 (2)
C3—C4—C5—C8170.81 (12)C20—C21—C22—C23−0.3 (2)
N1—C6—C7—C23147.66 (10)C20—C21—C22—N3176.32 (14)
C16—C6—C7—C23−86.48 (13)C19—C18—C23—C22−1.2 (2)
C17—C6—C7—C2326.31 (14)C19—C18—C23—C7179.05 (14)
N1—C6—C7—C24−100.46 (11)C21—C22—C23—C181.0 (2)
C16—C6—C7—C2425.40 (14)N3—C22—C23—C18−176.14 (12)
C17—C6—C7—C24138.19 (10)C21—C22—C23—C7−179.20 (12)
N1—C6—C7—C816.20 (11)N3—C22—C23—C73.66 (15)
C16—C6—C7—C8142.06 (11)C24—C7—C23—C18170.03 (14)
C17—C6—C7—C8−105.16 (11)C8—C7—C23—C1848.5 (2)
N1—C5—C8—C9−163.80 (11)C6—C7—C23—C18−73.96 (18)
C4—C5—C8—C978.22 (16)C24—C7—C23—C22−9.74 (13)
N1—C5—C8—C7−35.14 (12)C8—C7—C23—C22−131.27 (12)
C4—C5—C8—C7−153.12 (11)C6—C7—C23—C22106.27 (12)
C23—C7—C8—C915.14 (16)C23—C7—C24—O4−167.64 (13)
C24—C7—C8—C9−101.89 (13)C8—C7—C24—O4−39.52 (17)
C6—C7—C8—C9142.87 (11)C6—C7—C24—O472.24 (16)
C23—C7—C8—C5−115.95 (12)C23—C7—C24—N312.89 (13)
C24—C7—C8—C5127.02 (11)C8—C7—C24—N3141.01 (11)
C6—C7—C8—C511.78 (12)C6—C7—C24—N3−107.23 (11)
C5—C8—C9—O2−163.28 (14)C16—C6—N1—C166.27 (14)
C7—C8—C9—O272.00 (19)C17—C6—N1—C1−50.20 (15)
C5—C8—C9—O115.76 (18)C7—C6—N1—C1−167.55 (10)
C7—C8—C9—O1−108.95 (14)C16—C6—N1—C5−166.61 (10)
C16—C11—C12—C131.4 (2)C17—C6—N1—C576.93 (12)
C11—C12—C13—C141.0 (3)C7—C6—N1—C5−40.43 (11)
C12—C13—C14—C15−1.8 (2)C2—C1—N1—C6−177.87 (11)
C13—C14—C15—C160.2 (2)C2—C1—N1—C558.12 (15)
C13—C14—C15—N2176.36 (14)C4—C5—N1—C6170.13 (10)
C12—C11—C16—C15−2.9 (2)C8—C5—N1—C648.25 (12)
C12—C11—C16—C6178.76 (14)C4—C5—N1—C1−60.98 (14)
C14—C15—C16—C112.1 (2)C8—C5—N1—C1177.14 (10)
N2—C15—C16—C11−174.62 (12)O3—C17—N2—C15169.09 (14)
C14—C15—C16—C6−179.17 (12)C6—C17—N2—C15−9.49 (14)
N2—C15—C16—C64.08 (14)C14—C15—N2—C17−172.88 (13)
N1—C6—C16—C1145.73 (19)C16—C15—N2—C173.64 (15)
C17—C6—C16—C11169.56 (14)O4—C24—N3—C22168.88 (13)
C7—C6—C16—C11−73.29 (18)C7—C24—N3—C22−11.64 (14)
N1—C6—C16—C15−132.75 (11)O4—C24—N3—C25−8.2 (2)
C17—C6—C16—C15−8.92 (13)C7—C24—N3—C25171.31 (12)
C7—C6—C16—C15108.23 (12)C21—C22—N3—C24−171.74 (14)
N1—C6—C17—O3−43.25 (18)C23—C22—N3—C245.19 (15)
C16—C6—C17—O3−167.55 (14)C21—C22—N3—C255.3 (2)
C7—C6—C17—O370.37 (16)C23—C22—N3—C25−177.78 (13)
N1—C6—C17—N2135.32 (11)O2—C9—O1—C101.1 (3)
C16—C6—C17—N211.02 (13)C8—C9—O1—C10−177.99 (17)
D—H···AD—HH···AD···AD—H···A
N2—H2C···O4i0.862.212.9639 (15)146
C2—H2A···O3ii0.972.483.348 (2)150
C25—H25C···Cg6iii0.962.813.5617 (19)135
Table 1

Hydrogen-bond geometry (Å, °)

Cg6 is the centroid of the C18–C23 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2C⋯O4i 0.862.212.9639 (15)146
C2—H2A⋯O3ii 0.972.483.348 (2)150
C25—H25CCg6iii 0.962.813.5617 (19)135

Symmetry codes: (i) ; (ii) ; (iii) .

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