Literature DB >> 23125690

3-(3-Fluoro-phenyl-sulfin-yl)-5-iodo-2,7-dimethyl-1-benzofuran.

Hong Dae Choi1, Pil Ja Seo, Uk Lee.   

Abstract

In the title compound, C(16)H(12)FIO(2)S, the 3-fluoro-phenyl ring makes a dihedral angle of 76.47 (6)° with the mean plane [r.m.s. deviation = 0.013 (2) Å] of the benzofuran fragment. In the crystal, mol-ecules are linked by weak C-H⋯O hydrogen bonds,forming chains along the b-axis direction, and an I⋯O contact [3.204 (2) Å]. The crystal structure also exhibits slipped π-π inter-actions between the 3-fluoro-phenyl rings of neighbouring mol-ecules [centroid-centroid distance = 3.683 (3) Å and slippage = 1.708 (3) Å].

Entities:  

Year:  2012        PMID: 23125690      PMCID: PMC3470246          DOI: 10.1107/S1600536812037944

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information and the crystal structures of related compounds, see: Choi et al. (2008 ▶, 2011 ▶). For a review of halogen bonding, see: Politzer et al. (2007 ▶).

Experimental

Crystal data

C16H12FIO2S M = 414.22 Monoclinic, a = 8.3285 (3) Å b = 15.1807 (5) Å c = 12.2471 (4) Å β = 90.250 (2)° V = 1548.42 (9) Å3 Z = 4 Mo Kα radiation μ = 2.21 mm−1 T = 173 K 0.43 × 0.18 × 0.14 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.452, T max = 0.740 14445 measured reflections 3815 independent reflections 3409 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.065 S = 1.05 3815 reflections 192 parameters H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.71 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812037944/im2399sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812037944/im2399Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812037944/im2399Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12FIO2SF(000) = 808
Mr = 414.22Dx = 1.777 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 7687 reflections
a = 8.3285 (3) Åθ = 2.7–28.3°
b = 15.1807 (5) ŵ = 2.21 mm1
c = 12.2471 (4) ÅT = 173 K
β = 90.250 (2)°Block, colourless
V = 1548.42 (9) Å30.43 × 0.18 × 0.14 mm
Z = 4
Bruker SMART APEXII CCD diffractometer3815 independent reflections
Radiation source: rotating anode3409 reflections with I > 2σ(I)
Graphite multilayer monochromatorRint = 0.035
Detector resolution: 10.0 pixels mm-1θmax = 28.3°, θmin = 2.1°
φ and ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −20→20
Tmin = 0.452, Tmax = 0.740l = −12→16
14445 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: difference Fourier map
wR(F2) = 0.065H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0282P)2 + 0.8484P] where P = (Fo2 + 2Fc2)/3
3815 reflections(Δ/σ)max = 0.001
192 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.71 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.567756 (18)0.313250 (10)0.587900 (13)0.03495 (7)
S10.86223 (6)0.46644 (4)0.13656 (4)0.02703 (12)
F10.26520 (17)0.54480 (10)0.13600 (12)0.0441 (4)
C10.8607 (3)0.52209 (14)0.26168 (17)0.0250 (4)
O10.90716 (19)0.63275 (10)0.37911 (13)0.0289 (3)
O20.94638 (19)0.38071 (11)0.14941 (15)0.0387 (4)
C20.8029 (2)0.49449 (14)0.36768 (16)0.0238 (4)
C30.7257 (3)0.42026 (14)0.40952 (18)0.0280 (4)
H30.70210.37060.36500.034*
C40.6852 (3)0.42242 (15)0.51872 (19)0.0297 (5)
C50.7189 (3)0.49477 (16)0.58547 (18)0.0325 (5)
H50.68860.49300.66010.039*
C60.7957 (3)0.56934 (15)0.54554 (18)0.0298 (5)
C70.8348 (3)0.56539 (14)0.43646 (17)0.0260 (4)
C80.9211 (3)0.60468 (14)0.27344 (18)0.0273 (4)
C90.8290 (4)0.64909 (17)0.6148 (2)0.0420 (6)
H9A0.93980.66850.60330.063*
H9B0.81380.63420.69190.063*
H9C0.75500.69660.59430.063*
C100.9931 (3)0.66853 (15)0.1966 (2)0.0378 (6)
H10A0.99950.64200.12380.057*
H10B1.10120.68420.22180.057*
H10C0.92640.72160.19330.057*
C110.6519 (2)0.44006 (14)0.12914 (16)0.0235 (4)
C120.5369 (3)0.50573 (15)0.14214 (16)0.0272 (4)
H120.56550.56410.16240.033*
C130.3799 (3)0.48178 (16)0.12415 (17)0.0297 (5)
C140.3321 (3)0.39863 (17)0.0960 (2)0.0346 (5)
H140.22180.38490.08540.042*
C150.4494 (3)0.33527 (16)0.0835 (2)0.0366 (5)
H150.41970.27700.06380.044*
C160.6107 (3)0.35558 (16)0.09950 (19)0.0314 (5)
H160.69100.31180.09010.038*
U11U22U33U12U13U23
I10.03228 (10)0.03571 (10)0.03690 (10)0.00319 (6)0.00514 (7)0.01028 (6)
S10.0235 (3)0.0315 (3)0.0261 (3)−0.0005 (2)0.0032 (2)−0.0058 (2)
F10.0332 (7)0.0563 (9)0.0430 (8)0.0206 (7)0.0027 (6)−0.0041 (7)
C10.0253 (10)0.0242 (10)0.0254 (10)0.0023 (8)0.0001 (8)−0.0024 (8)
O10.0346 (8)0.0227 (7)0.0293 (8)0.0007 (6)−0.0009 (7)−0.0027 (6)
O20.0259 (8)0.0370 (9)0.0530 (11)0.0077 (7)−0.0050 (8)−0.0157 (8)
C20.0239 (10)0.0252 (10)0.0224 (10)0.0032 (8)−0.0017 (8)−0.0013 (8)
C30.0303 (11)0.0250 (10)0.0287 (11)0.0007 (9)0.0003 (9)−0.0012 (8)
C40.0284 (11)0.0300 (11)0.0306 (11)0.0036 (9)0.0012 (9)0.0065 (9)
C50.0383 (13)0.0366 (12)0.0227 (10)0.0081 (10)0.0016 (9)0.0006 (9)
C60.0343 (12)0.0301 (11)0.0251 (10)0.0081 (9)−0.0045 (9)−0.0034 (9)
C70.0280 (11)0.0225 (10)0.0275 (11)0.0046 (8)−0.0031 (9)−0.0010 (8)
C80.0281 (10)0.0252 (10)0.0285 (11)0.0029 (8)−0.0001 (9)−0.0018 (8)
C90.0573 (17)0.0371 (13)0.0316 (13)0.0050 (12)−0.0034 (12)−0.0101 (11)
C100.0481 (15)0.0257 (11)0.0398 (14)−0.0026 (10)0.0077 (12)0.0023 (10)
C110.0226 (10)0.0282 (10)0.0198 (9)0.0014 (8)0.0017 (8)0.0016 (8)
C120.0313 (11)0.0301 (11)0.0202 (10)0.0059 (9)0.0028 (8)−0.0014 (8)
C130.0260 (11)0.0419 (13)0.0214 (10)0.0121 (9)0.0035 (8)0.0034 (9)
C140.0238 (11)0.0448 (14)0.0353 (12)−0.0015 (10)0.0010 (9)0.0094 (10)
C150.0317 (12)0.0314 (12)0.0466 (14)−0.0049 (10)−0.0017 (11)0.0078 (10)
C160.0264 (11)0.0295 (12)0.0383 (13)0.0033 (9)−0.0001 (9)0.0042 (9)
I1—C42.105 (2)C6—C91.503 (3)
I1—O2i3.2041 (16)C8—C101.480 (3)
S1—O21.4862 (17)C9—H9A0.9800
S1—C11.750 (2)C9—H9B0.9800
S1—C111.798 (2)C9—H9C0.9800
F1—C131.360 (2)C10—H10A0.9800
C1—C81.358 (3)C10—H10B0.9800
C1—C21.449 (3)C10—H10C0.9800
O1—C81.368 (3)C11—C161.376 (3)
O1—C71.381 (3)C11—C121.392 (3)
C2—C71.392 (3)C12—C131.374 (3)
C2—C31.396 (3)C12—H120.9500
C3—C41.381 (3)C13—C141.367 (3)
C3—H30.9500C14—C151.380 (4)
C4—C51.397 (3)C14—H140.9500
C5—C61.390 (3)C15—C161.391 (3)
C5—H50.9500C15—H150.9500
C6—C71.378 (3)C16—H160.9500
C4—I1—O2i165.03 (7)C6—C9—H9B109.5
O2—S1—C1109.58 (10)H9A—C9—H9B109.5
O2—S1—C11105.61 (10)C6—C9—H9C109.5
C1—S1—C1198.11 (10)H9A—C9—H9C109.5
C8—C1—C2107.24 (18)H9B—C9—H9C109.5
C8—C1—S1122.30 (17)C8—C10—H10A109.5
C2—C1—S1130.45 (16)C8—C10—H10B109.5
C8—O1—C7106.85 (16)H10A—C10—H10B109.5
C7—C2—C3119.29 (19)C8—C10—H10C109.5
C7—C2—C1104.80 (18)H10A—C10—H10C109.5
C3—C2—C1135.89 (19)H10B—C10—H10C109.5
C4—C3—C2116.8 (2)C16—C11—C12121.8 (2)
C4—C3—H3121.6C16—C11—S1117.57 (16)
C2—C3—H3121.6C12—C11—S1120.35 (17)
C3—C4—C5122.4 (2)C13—C12—C11116.6 (2)
C3—C4—I1119.15 (17)C13—C12—H12121.7
C5—C4—I1118.43 (17)C11—C12—H12121.7
C6—C5—C4121.7 (2)F1—C13—C14118.2 (2)
C6—C5—H5119.1F1—C13—C12117.7 (2)
C4—C5—H5119.1C14—C13—C12124.1 (2)
C7—C6—C5114.6 (2)C13—C14—C15117.8 (2)
C7—C6—C9122.6 (2)C13—C14—H14121.1
C5—C6—C9122.8 (2)C15—C14—H14121.1
C6—C7—O1124.52 (19)C14—C15—C16120.9 (2)
C6—C7—C2125.1 (2)C14—C15—H15119.5
O1—C7—C2110.33 (18)C16—C15—H15119.5
C1—C8—O1110.78 (19)C11—C16—C15118.9 (2)
C1—C8—C10133.5 (2)C11—C16—H16120.5
O1—C8—C10115.72 (19)C15—C16—H16120.5
C6—C9—H9A109.5
O2—S1—C1—C8123.85 (19)C3—C2—C7—C6−0.2 (3)
C11—S1—C1—C8−126.32 (19)C1—C2—C7—C6178.1 (2)
O2—S1—C1—C2−55.4 (2)C3—C2—C7—O1−178.33 (18)
C11—S1—C1—C254.4 (2)C1—C2—C7—O10.0 (2)
C8—C1—C2—C70.0 (2)C2—C1—C8—O10.1 (2)
S1—C1—C2—C7179.29 (17)S1—C1—C8—O1−179.29 (15)
C8—C1—C2—C3177.8 (2)C2—C1—C8—C10−178.4 (2)
S1—C1—C2—C3−2.8 (4)S1—C1—C8—C102.2 (4)
C7—C2—C3—C40.1 (3)C7—O1—C8—C1−0.1 (2)
C1—C2—C3—C4−177.6 (2)C7—O1—C8—C10178.6 (2)
C2—C3—C4—C50.0 (3)O2—S1—C11—C16−21.3 (2)
C2—C3—C4—I1179.77 (15)C1—S1—C11—C16−134.30 (18)
O2i—I1—C4—C334.5 (4)O2—S1—C11—C12165.15 (17)
O2i—I1—C4—C5−145.8 (2)C1—S1—C11—C1252.11 (19)
C3—C4—C5—C60.0 (4)C16—C11—C12—C130.2 (3)
I1—C4—C5—C6−179.77 (17)S1—C11—C12—C13173.49 (15)
C4—C5—C6—C7−0.1 (3)C11—C12—C13—F1−179.81 (18)
C4—C5—C6—C9178.2 (2)C11—C12—C13—C140.7 (3)
C5—C6—C7—O1178.1 (2)F1—C13—C14—C15179.6 (2)
C9—C6—C7—O1−0.2 (3)C12—C13—C14—C15−0.9 (4)
C5—C6—C7—C20.1 (3)C13—C14—C15—C160.2 (4)
C9—C6—C7—C2−178.1 (2)C12—C11—C16—C15−0.8 (3)
C8—O1—C7—C6−178.1 (2)S1—C11—C16—C15−174.31 (19)
C8—O1—C7—C20.1 (2)C14—C15—C16—C110.6 (4)
D—H···AD—HH···AD···AD—H···A
C14—H14···O2ii0.952.433.292 (3)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C14—H14⋯O2i 0.952.433.292 (3)151

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An overview of halogen bonding.

Authors:  Peter Politzer; Pat Lane; Monica C Concha; Yuguang Ma; Jane S Murray
Journal:  J Mol Model       Date:  2006-09-30       Impact factor: 1.810

3.  5-Iodo-2,7-dimethyl-3-phenyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-23

4.  3-(4-Fluoro-phenyl-sulfin-yl)-5-iodo-2,7-dimethyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-13
  4 in total

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