Literature DB >> 23125656

Benzyl 2-benzyl-4-[(3aS,7aR)-2,3,3a,4,5,6,7,7a-octa-hydro-1H-isoindol-2-yl]-4-oxobutano-ate.

Zhenhua Shang1, Longpeng Xu, Ligang Zheng, Yong Zhang.   

Abstract

In the title compound, C(26)H(31)NO(3), the octa-hydro-1H-isoindole ring is not planar and the two rings are twisted with a C-C-C-C torsion angle of 73.6 (4)°. The six-membered ring has a chair conformation while the five-membered ring has an envelope conformation on the C-atom in position 7a. The H atoms in the 3a- and 7a-psitions are cis and the H-C-C-H torsion angle is 42.36°.

Entities:  

Year:  2012        PMID: 23125656      PMCID: PMC3470212          DOI: 10.1107/S1600536812037567

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is an inter­mediate of mitiglinide, which was obtained when 2-benzyl-4-[(3aS,7aR)-2,3,3a,4,5,6,7,7a-octa­hydro-1H-isoindol-2-yl]-4-oxobutanoic acid was reacted with 1-(chloro­meth­yl)benzene in ethyl acetate with potassium iodide as catalyst. For the use of mitiglinide, a potassium channel antagonist, in the treatment of type 2 diabetes, see: Reimann et al. (2001 ▶).

Experimental

Crystal data

C26H31NO3 M = 405.52 Triclinic, a = 5.8542 (12) Å b = 9.0365 (18) Å c = 11.352 (2) Å α = 108.59 (3)° β = 93.94 (3)° γ = 101.23 (3)° V = 552.7 (2) Å3 Z = 1 Mo Kα radiation μ = 0.08 mm−1 T = 294 K 0.16 × 0.14 × 0.10 mm

Data collection

Rigaku Saturn70 CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.988, T max = 0.992 5536 measured reflections 2588 independent reflections 1424 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.106 S = 0.89 2588 reflections 271 parameters 3 restraints H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812037567/hg5245sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812037567/hg5245Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812037567/hg5245Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H31NO3Z = 1
Mr = 405.52F(000) = 218
Triclinic, P1Dx = 1.218 Mg m3
Hall symbol: P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.8542 (12) ÅCell parameters from 1681 reflections
b = 9.0365 (18) Åθ = 1.9–27.9°
c = 11.352 (2) ŵ = 0.08 mm1
α = 108.59 (3)°T = 294 K
β = 93.94 (3)°Plate, colorless
γ = 101.23 (3)°0.16 × 0.14 × 0.10 mm
V = 552.7 (2) Å3
Rigaku Saturn70 CCD diffractometer2588 independent reflections
Radiation source: rotating anode1424 reflections with I > 2σ(I)
Multilayer monochromatorRint = 0.049
Detector resolution: 7.31 pixels mm-1θmax = 27.9°, θmin = 1.9°
ω scansh = −7→7
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −11→10
Tmin = 0.988, Tmax = 0.992l = −14→14
5536 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H-atom parameters constrained
S = 0.89w = 1/[σ2(Fo2) + (0.0499P)2] where P = (Fo2 + 2Fc2)/3
2588 reflections(Δ/σ)max = 0.002
271 parametersΔρmax = 0.18 e Å3
3 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.1006 (3)0.2391 (3)0.4493 (2)0.0461 (6)
O20.2379 (5)0.2088 (3)0.7354 (3)0.0781 (9)
O30.0275 (4)0.3929 (3)0.7968 (2)0.0530 (6)
N10.1082 (4)0.0726 (3)0.3389 (2)0.0414 (7)
C10.3247 (5)0.0184 (4)0.3070 (3)0.0460 (8)
H1A0.3538−0.05620.34850.055*
H1B0.45990.10830.33000.055*
C20.2709 (5)−0.0637 (4)0.1651 (3)0.0388 (7)
H20.3633−0.14490.13780.047*
C30.3173 (6)0.0541 (4)0.0949 (3)0.0500 (9)
H3A0.25290.14580.13480.060*
H3B0.48580.09210.10030.060*
C40.2112 (7)−0.0190 (5)−0.0407 (4)0.0660 (11)
H4A0.2796−0.1082−0.08210.079*
H4B0.24580.0602−0.08190.079*
C5−0.0515 (7)−0.0771 (5)−0.0518 (4)0.0683 (12)
H5A−0.1179−0.1232−0.13980.082*
H5B−0.11990.0131−0.01310.082*
C6−0.1126 (6)−0.2014 (4)0.0109 (3)0.0551 (10)
H6A−0.0674−0.2984−0.03690.066*
H6B−0.2816−0.22740.01020.066*
C70.0077 (5)−0.1453 (4)0.1451 (3)0.0422 (8)
H7−0.0069−0.23930.17190.051*
C8−0.0910 (5)−0.0199 (4)0.2404 (3)0.0452 (8)
H8A−0.14990.04900.20140.054*
H8B−0.2179−0.07130.27480.054*
C90.0902 (5)0.2018 (4)0.4337 (3)0.0352 (7)
C100.3132 (5)0.3000 (4)0.5201 (3)0.0392 (7)
H10A0.40840.36100.47720.047*
H10B0.40180.22820.53890.047*
C110.2690 (5)0.4157 (4)0.6433 (3)0.0383 (7)
H110.15020.47080.62430.046*
C120.4942 (6)0.5424 (4)0.7134 (3)0.0505 (9)
H12A0.46760.59930.79760.061*
H12B0.62030.48880.72050.061*
C130.5688 (5)0.6615 (4)0.6478 (3)0.0400 (7)
C140.4546 (6)0.7839 (4)0.6598 (3)0.0517 (9)
H140.32650.78780.70400.062*
C150.5261 (7)0.9007 (4)0.6076 (3)0.0639 (11)
H150.44690.98260.61710.077*
C160.7108 (7)0.8964 (5)0.5428 (4)0.0687 (11)
H160.76000.97560.50820.082*
C170.8251 (7)0.7751 (6)0.5284 (4)0.0755 (13)
H170.95160.77150.48310.091*
C180.7548 (6)0.6577 (5)0.5804 (4)0.0589 (10)
H180.83390.57560.56970.071*
C190.1781 (6)0.3255 (4)0.7267 (3)0.0439 (8)
C20−0.0779 (7)0.3150 (5)0.8789 (3)0.0586 (10)
H20A−0.06770.20350.84950.070*
H20B−0.24320.31720.87490.070*
C210.0366 (6)0.3918 (4)1.0121 (3)0.0465 (8)
C220.2699 (6)0.4696 (5)1.0456 (4)0.0586 (10)
H220.36250.47870.98380.070*
C230.3670 (8)0.5339 (5)1.1696 (4)0.0681 (11)
H230.52520.58621.19090.082*
C240.2340 (9)0.5220 (5)1.2627 (4)0.0724 (12)
H240.30050.56671.34670.087*
C250.0015 (9)0.4432 (5)1.2297 (4)0.0730 (13)
H25−0.08980.43151.29150.088*
C26−0.0973 (7)0.3812 (4)1.1053 (4)0.0564 (9)
H26−0.25650.33161.08400.068*
U11U22U33U12U13U23
O10.0369 (12)0.0497 (13)0.0454 (14)0.0100 (10)0.0056 (10)0.0075 (11)
O20.122 (2)0.0620 (17)0.083 (2)0.0488 (17)0.0506 (18)0.0457 (16)
O30.0657 (15)0.0563 (15)0.0471 (15)0.0236 (12)0.0191 (12)0.0233 (12)
N10.0273 (13)0.0517 (16)0.0349 (15)0.0075 (12)−0.0012 (11)0.0028 (13)
C10.0328 (17)0.056 (2)0.044 (2)0.0137 (14)0.0036 (15)0.0085 (16)
C20.0368 (16)0.0396 (18)0.0369 (18)0.0121 (13)0.0034 (13)0.0070 (14)
C30.0440 (18)0.055 (2)0.055 (2)0.0111 (16)0.0147 (16)0.0213 (18)
C40.088 (3)0.079 (3)0.042 (2)0.028 (2)0.017 (2)0.028 (2)
C50.084 (3)0.079 (3)0.035 (2)0.025 (2)−0.0119 (19)0.010 (2)
C60.057 (2)0.048 (2)0.042 (2)0.0109 (17)−0.0080 (17)−0.0052 (17)
C70.0438 (18)0.0321 (17)0.042 (2)0.0040 (14)0.0001 (15)0.0054 (15)
C80.0309 (16)0.052 (2)0.0377 (19)0.0009 (14)−0.0017 (14)0.0019 (15)
C90.0310 (15)0.0403 (17)0.0323 (17)0.0027 (13)0.0034 (12)0.0130 (14)
C100.0348 (16)0.0454 (18)0.0341 (18)0.0055 (13)0.0028 (13)0.0116 (15)
C110.0441 (17)0.0372 (17)0.0297 (17)0.0082 (14)−0.0007 (14)0.0082 (14)
C120.062 (2)0.0398 (19)0.042 (2)0.0000 (16)−0.0092 (16)0.0134 (16)
C130.0426 (18)0.0352 (17)0.0335 (17)0.0024 (13)−0.0067 (14)0.0063 (13)
C140.067 (2)0.046 (2)0.042 (2)0.0200 (18)0.0127 (17)0.0092 (16)
C150.087 (3)0.041 (2)0.062 (3)0.018 (2)0.007 (2)0.015 (2)
C160.079 (3)0.055 (2)0.068 (3)−0.003 (2)0.002 (2)0.028 (2)
C170.048 (2)0.097 (4)0.082 (3)0.005 (2)0.017 (2)0.038 (3)
C180.049 (2)0.059 (2)0.070 (3)0.0163 (18)0.0054 (19)0.022 (2)
C190.0541 (19)0.0417 (19)0.0372 (19)0.0149 (16)0.0051 (15)0.0132 (15)
C200.059 (2)0.072 (3)0.052 (2)0.0118 (19)0.0156 (19)0.030 (2)
C210.058 (2)0.044 (2)0.047 (2)0.0195 (17)0.0160 (17)0.0224 (17)
C220.061 (2)0.065 (2)0.053 (2)0.018 (2)0.0123 (19)0.021 (2)
C230.074 (3)0.062 (3)0.067 (3)0.017 (2)0.005 (2)0.021 (2)
C240.114 (4)0.057 (3)0.047 (3)0.030 (3)0.000 (3)0.015 (2)
C250.115 (4)0.059 (3)0.057 (3)0.026 (3)0.038 (3)0.028 (2)
C260.069 (2)0.053 (2)0.055 (2)0.0170 (18)0.023 (2)0.0240 (19)
O1—C91.236 (3)C10—H10B0.9700
O2—C191.204 (4)C11—C191.495 (5)
O3—C191.334 (4)C11—C121.539 (4)
O3—C201.440 (4)C11—H110.9800
N1—C91.340 (4)C12—C131.509 (5)
N1—C81.468 (4)C12—H12A0.9700
N1—C11.473 (4)C12—H12B0.9700
C1—C21.524 (4)C13—C181.373 (5)
C1—H1A0.9700C13—C141.376 (4)
C1—H1B0.9700C14—C151.379 (5)
C2—C31.516 (4)C14—H140.9300
C2—C71.541 (4)C15—C161.348 (5)
C2—H20.9800C15—H150.9300
C3—C41.501 (5)C16—C171.364 (6)
C3—H3A0.9700C16—H160.9300
C3—H3B0.9700C17—C181.381 (6)
C4—C51.507 (6)C17—H170.9300
C4—H4A0.9700C18—H180.9300
C4—H4B0.9700C20—C211.493 (5)
C5—C61.512 (5)C20—H20A0.9700
C5—H5A0.9700C20—H20B0.9700
C5—H5B0.9700C21—C221.374 (5)
C6—C71.515 (5)C21—C261.375 (4)
C6—H6A0.9700C22—C231.372 (5)
C6—H6B0.9700C22—H220.9300
C7—C81.532 (4)C23—C241.374 (6)
C7—H70.9800C23—H230.9300
C8—H8A0.9700C24—C251.372 (7)
C8—H8B0.9700C24—H240.9300
C9—C101.507 (4)C25—C261.379 (6)
C10—C111.529 (4)C25—H250.9300
C10—H10A0.9700C26—H260.9300
C19—O3—C20117.8 (3)C11—C10—H10B108.9
C9—N1—C8121.5 (2)H10A—C10—H10B107.7
C9—N1—C1127.0 (2)C19—C11—C10110.2 (3)
C8—N1—C1110.9 (2)C19—C11—C12109.0 (3)
N1—C1—C2102.8 (2)C10—C11—C12111.7 (3)
N1—C1—H1A111.2C19—C11—H11108.6
C2—C1—H1A111.2C10—C11—H11108.6
N1—C1—H1B111.2C12—C11—H11108.6
C2—C1—H1B111.2C13—C12—C11112.4 (3)
H1A—C1—H1B109.1C13—C12—H12A109.1
C3—C2—C1112.5 (3)C11—C12—H12A109.1
C3—C2—C7111.5 (3)C13—C12—H12B109.1
C1—C2—C7102.8 (3)C11—C12—H12B109.1
C3—C2—H2109.9H12A—C12—H12B107.9
C1—C2—H2109.9C18—C13—C14117.9 (3)
C7—C2—H2109.9C18—C13—C12122.6 (3)
C4—C3—C2112.4 (3)C14—C13—C12119.5 (3)
C4—C3—H3A109.1C13—C14—C15121.3 (3)
C2—C3—H3A109.1C13—C14—H14119.3
C4—C3—H3B109.1C15—C14—H14119.3
C2—C3—H3B109.1C16—C15—C14120.1 (3)
H3A—C3—H3B107.8C16—C15—H15119.9
C3—C4—C5110.2 (3)C14—C15—H15119.9
C3—C4—H4A109.6C15—C16—C17119.7 (4)
C5—C4—H4A109.6C15—C16—H16120.2
C3—C4—H4B109.6C17—C16—H16120.2
C5—C4—H4B109.6C16—C17—C18120.6 (4)
H4A—C4—H4B108.1C16—C17—H17119.7
C4—C5—C6111.2 (3)C18—C17—H17119.7
C4—C5—H5A109.4C13—C18—C17120.4 (3)
C6—C5—H5A109.4C13—C18—H18119.8
C4—C5—H5B109.4C17—C18—H18119.8
C6—C5—H5B109.4O2—C19—O3122.4 (3)
H5A—C5—H5B108.0O2—C19—C11125.2 (3)
C5—C6—C7112.8 (3)O3—C19—C11112.3 (3)
C5—C6—H6A109.0O3—C20—C21112.9 (3)
C7—C6—H6A109.0O3—C20—H20A109.0
C5—C6—H6B109.0C21—C20—H20A109.0
C7—C6—H6B109.0O3—C20—H20B109.0
H6A—C6—H6B107.8C21—C20—H20B109.0
C6—C7—C8115.5 (3)H20A—C20—H20B107.8
C6—C7—C2114.9 (3)C22—C21—C26118.7 (3)
C8—C7—C2102.4 (2)C22—C21—C20123.1 (3)
C6—C7—H7107.8C26—C21—C20118.2 (3)
C8—C7—H7107.8C23—C22—C21120.5 (4)
C2—C7—H7107.8C23—C22—H22119.8
N1—C8—C7105.1 (2)C21—C22—H22119.8
N1—C8—H8A110.7C22—C23—C24120.9 (4)
C7—C8—H8A110.7C22—C23—H23119.5
N1—C8—H8B110.7C24—C23—H23119.5
C7—C8—H8B110.7C25—C24—C23118.9 (4)
H8A—C8—H8B108.8C25—C24—H24120.6
O1—C9—N1121.5 (3)C23—C24—H24120.6
O1—C9—C10121.5 (3)C24—C25—C26120.2 (4)
N1—C9—C10117.0 (2)C24—C25—H25119.9
C9—C10—C11113.3 (2)C26—C25—H25119.9
C9—C10—H10A108.9C21—C26—C25120.8 (4)
C11—C10—H10A108.9C21—C26—H26119.6
C9—C10—H10B108.9C25—C26—H26119.6
C9—N1—C1—C2−149.7 (3)C10—C11—C12—C1370.1 (3)
C8—N1—C1—C221.3 (3)C11—C12—C13—C18−104.7 (4)
N1—C1—C2—C383.2 (3)C11—C12—C13—C1478.3 (4)
N1—C1—C2—C7−36.9 (3)C18—C13—C14—C15−1.0 (5)
C1—C2—C3—C4−166.1 (3)C12—C13—C14—C15176.1 (3)
C7—C2—C3—C4−51.2 (4)C13—C14—C15—C160.3 (5)
C2—C3—C4—C559.6 (4)C14—C15—C16—C170.5 (6)
C3—C4—C5—C6−59.5 (4)C15—C16—C17—C18−0.6 (6)
C4—C5—C6—C752.5 (4)C14—C13—C18—C170.9 (5)
C5—C6—C7—C873.6 (4)C12—C13—C18—C17−176.1 (4)
C5—C6—C7—C2−45.4 (4)C16—C17—C18—C13−0.2 (6)
C3—C2—C7—C644.2 (4)C20—O3—C19—O2−4.4 (5)
C1—C2—C7—C6165.0 (3)C20—O3—C19—C11178.4 (3)
C3—C2—C7—C8−81.8 (3)C10—C11—C19—O236.0 (4)
C1—C2—C7—C838.9 (3)C12—C11—C19—O2−86.9 (4)
C9—N1—C8—C7174.7 (3)C10—C11—C19—O3−146.9 (3)
C1—N1—C8—C73.2 (3)C12—C11—C19—O390.2 (3)
C6—C7—C8—N1−151.8 (3)C19—O3—C20—C21100.6 (4)
C2—C7—C8—N1−26.1 (3)O3—C20—C21—C22−29.7 (5)
C8—N1—C9—O17.4 (4)O3—C20—C21—C26151.6 (3)
C1—N1—C9—O1177.6 (3)C26—C21—C22—C230.6 (5)
C8—N1—C9—C10−172.3 (3)C20—C21—C22—C23−178.1 (3)
C1—N1—C9—C10−2.2 (4)C21—C22—C23—C240.0 (6)
O1—C9—C10—C1115.8 (4)C22—C23—C24—C250.6 (6)
N1—C9—C10—C11−164.5 (3)C23—C24—C25—C26−1.8 (6)
C9—C10—C11—C1973.2 (3)C22—C21—C26—C25−1.9 (5)
C9—C10—C11—C12−165.5 (2)C20—C21—C26—C25176.9 (4)
C19—C11—C12—C13−167.8 (3)C24—C25—C26—C212.5 (6)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Effects of mitiglinide (S 21403) on Kir6.2/SUR1, Kir6.2/SUR2A and Kir6.2/SUR2B types of ATP-sensitive potassium channel.

Authors:  F Reimann; P Proks; F M Ashcroft
Journal:  Br J Pharmacol       Date:  2001-04       Impact factor: 8.739

  2 in total

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