Literature DB >> 23125637

N-(2-{[5-Bromo-2-(piperidin-1-yl)pyrimidin-4-yl]sulfan-yl}-4-meth-oxy-phen-yl)-4-methyl-benzene-sulfonamide.

Mohan Kumar1, L Mallesha, M A Sridhar, Kamini Kapoor, Vivek K Gupta, Rajni Kant.   

Abstract

In the title compound, C(23)H(25)BrN(4)O(3)S(2), the benzene rings bridged by the sulfonamide group are tilted relative to each other by 69.7 (1)° and the dihedral angle between the sulfur-bridged pyrimidine and benzene rings is 70.4 (1)°. The mol-ecular conformation is stabilized by a weak intra-molecular π-π stacking inter-action between the pyrimidine and the 4-methyl benzene rings [centroid-centroid distance = 3.633 (2) Å]. The piperidine ring adopts a chair conformation. In the crystal, mol-ecules are linked into inversion dimers by pairs of N-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 23125637      PMCID: PMC3470193          DOI: 10.1107/S1600536812037257

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure and background to sulfonamides, see: Kant et al. (2012 ▶).

Experimental

Crystal data

C23H25BrN4O3S2 M = 549.50 Triclinic, a = 9.8318 (3) Å b = 10.3822 (3) Å c = 13.4393 (4) Å α = 96.654 (3)° β = 103.085 (3)° γ = 107.714 (3)° V = 1247.36 (6) Å3 Z = 2 Mo Kα radiation μ = 1.85 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur CCD, Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.764, T max = 1.000 41580 measured reflections 4385 independent reflections 3645 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.093 S = 1.03 4385 reflections 300 parameters H-atom parameters constrained Δρmax = 0.66 e Å−3 Δρmin = −0.52 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812037257/hb6947sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812037257/hb6947Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812037257/hb6947Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H25BrN4O3S2Z = 2
Mr = 549.50F(000) = 564
Triclinic, P1Dx = 1.463 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.8318 (3) ÅCell parameters from 16775 reflections
b = 10.3822 (3) Åθ = 3.4–29.1°
c = 13.4393 (4) ŵ = 1.85 mm1
α = 96.654 (3)°T = 293 K
β = 103.085 (3)°Block, light-brown
γ = 107.714 (3)°0.30 × 0.20 × 0.20 mm
V = 1247.36 (6) Å3
Oxford Diffraction Xcalibur CCD, Sapphire3 diffractometer4385 independent reflections
Radiation source: fine-focus sealed tube3645 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.038
Detector resolution: 16.1049 pixels mm-1θmax = 25.0°, θmin = 3.4°
ω scansh = −11→11
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −12→12
Tmin = 0.764, Tmax = 1.000l = −15→15
41580 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0396P)2 + 0.9744P] where P = (Fo2 + 2Fc2)/3
4385 reflections(Δ/σ)max = 0.001
300 parametersΔρmax = 0.66 e Å3
0 restraintsΔρmin = −0.52 e Å3
Experimental. CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27–08-2010 CrysAlis171. NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.00669 (4)0.82027 (4)0.88239 (3)0.06852 (14)
S10.22673 (8)0.63699 (8)0.49289 (5)0.04950 (19)
S20.20227 (7)0.65245 (7)0.79943 (5)0.04366 (17)
O10.3610 (3)0.6577 (2)0.46369 (16)0.0639 (6)
O20.0875 (3)0.5665 (2)0.41649 (15)0.0656 (6)
C10.2248 (3)0.7998 (3)0.5459 (2)0.0449 (6)
C20.0995 (4)0.8109 (3)0.5695 (3)0.0582 (8)
H20.01640.73260.55930.070*
C30.0980 (4)0.9391 (4)0.6086 (3)0.0696 (9)
H30.01340.94630.62520.084*
C40.2194 (4)1.0571 (3)0.6237 (3)0.0642 (9)
C50.3433 (4)1.0432 (3)0.6002 (3)0.0672 (9)
H50.42611.12160.61000.081*
C60.3486 (3)0.9157 (3)0.5622 (2)0.0574 (8)
H60.43440.90820.54790.069*
C70.2160 (6)1.1970 (4)0.6657 (4)0.1016 (15)
H7A0.31021.25060.71420.152*
H7B0.13911.18580.70050.152*
H7C0.19651.24350.60920.152*
N80.2273 (3)0.5458 (2)0.58395 (17)0.0485 (6)
H80.14760.47930.58050.058*
C90.3552 (3)0.5726 (3)0.6691 (2)0.0428 (6)
C100.4798 (4)0.5487 (3)0.6516 (2)0.0599 (8)
H100.48000.51820.58380.072*
C110.6028 (4)0.5690 (4)0.7322 (3)0.0629 (8)
H110.68680.55580.71850.076*
C120.6023 (3)0.6090 (3)0.8336 (2)0.0527 (7)
C130.4792 (3)0.6322 (3)0.8528 (2)0.0451 (6)
H130.47830.65920.92100.054*
C140.3561 (3)0.6157 (2)0.7709 (2)0.0391 (6)
O150.7290 (2)0.6271 (3)0.9099 (2)0.0810 (8)
C160.7150 (4)0.5974 (4)1.0061 (3)0.0660 (9)
H16A0.68370.66491.04070.099*
H16B0.80900.59951.04800.099*
H16C0.64250.50740.99600.099*
C170.2812 (3)0.8343 (3)0.83612 (18)0.0391 (6)
N180.4152 (2)0.8963 (2)0.82825 (16)0.0399 (5)
C190.4729 (3)1.0343 (3)0.8579 (2)0.0444 (6)
N200.4065 (3)1.1143 (2)0.8998 (2)0.0560 (6)
C210.2713 (4)1.0476 (3)0.9059 (2)0.0584 (8)
H210.22121.09900.93370.070*
C220.2008 (3)0.9085 (3)0.8739 (2)0.0480 (7)
N230.6066 (3)1.0965 (2)0.8425 (2)0.0548 (6)
C240.6954 (4)1.0140 (3)0.8157 (3)0.0648 (9)
H24A0.63000.92090.78190.078*
H24B0.76261.00880.87890.078*
C250.7831 (4)1.0749 (4)0.7447 (3)0.0768 (10)
H25A0.71581.06580.67710.092*
H25B0.84881.02420.73500.092*
C260.8740 (4)1.2256 (4)0.7879 (3)0.0828 (11)
H26A0.94981.23430.85120.099*
H26B0.92331.26380.73770.099*
C270.7764 (4)1.3046 (4)0.8112 (3)0.0788 (11)
H27A0.83771.39920.84400.095*
H27B0.70971.30610.74630.095*
C280.6865 (4)1.2435 (3)0.8813 (3)0.0685 (9)
H28A0.75191.25780.95060.082*
H28B0.61601.29030.88650.082*
U11U22U33U12U13U23
Br10.0502 (2)0.0873 (3)0.0799 (3)0.03164 (18)0.02998 (17)0.01633 (19)
S10.0587 (4)0.0511 (4)0.0322 (3)0.0106 (3)0.0140 (3)0.0029 (3)
S20.0408 (4)0.0443 (4)0.0436 (4)0.0102 (3)0.0162 (3)0.0030 (3)
O10.0750 (15)0.0739 (15)0.0493 (12)0.0249 (12)0.0317 (11)0.0101 (11)
O20.0735 (15)0.0658 (14)0.0344 (10)0.0018 (11)0.0058 (10)−0.0003 (10)
C10.0497 (16)0.0481 (16)0.0329 (13)0.0118 (13)0.0089 (12)0.0108 (12)
C20.0544 (18)0.0514 (18)0.066 (2)0.0141 (14)0.0163 (15)0.0143 (15)
C30.070 (2)0.072 (2)0.079 (2)0.0362 (19)0.0254 (19)0.0203 (19)
C40.081 (2)0.0513 (19)0.058 (2)0.0264 (18)0.0082 (17)0.0154 (15)
C50.071 (2)0.0516 (19)0.061 (2)0.0040 (16)0.0074 (17)0.0133 (16)
C60.0541 (18)0.0562 (19)0.0553 (18)0.0088 (15)0.0157 (14)0.0115 (15)
C70.137 (4)0.063 (2)0.107 (3)0.050 (3)0.019 (3)0.012 (2)
N80.0601 (15)0.0382 (12)0.0391 (12)0.0074 (11)0.0136 (11)0.0029 (10)
C90.0565 (16)0.0323 (13)0.0421 (15)0.0160 (12)0.0181 (13)0.0060 (11)
C100.082 (2)0.065 (2)0.0509 (18)0.0386 (18)0.0351 (17)0.0115 (15)
C110.065 (2)0.076 (2)0.071 (2)0.0401 (18)0.0359 (18)0.0246 (18)
C120.0499 (17)0.0580 (18)0.0585 (18)0.0205 (14)0.0216 (14)0.0241 (15)
C130.0482 (15)0.0457 (15)0.0420 (15)0.0128 (12)0.0170 (12)0.0111 (12)
C140.0446 (14)0.0304 (13)0.0436 (14)0.0107 (11)0.0181 (12)0.0065 (11)
O150.0464 (13)0.125 (2)0.0810 (17)0.0292 (13)0.0216 (12)0.0489 (16)
C160.062 (2)0.065 (2)0.062 (2)0.0191 (17)0.0039 (16)0.0112 (17)
C170.0440 (15)0.0459 (15)0.0286 (12)0.0183 (12)0.0095 (11)0.0053 (11)
N180.0460 (12)0.0388 (12)0.0372 (11)0.0153 (10)0.0164 (10)0.0046 (9)
C190.0560 (17)0.0430 (15)0.0368 (14)0.0187 (13)0.0165 (12)0.0052 (12)
N200.0729 (17)0.0441 (14)0.0582 (15)0.0233 (13)0.0301 (13)0.0045 (11)
C210.074 (2)0.0546 (19)0.0634 (19)0.0356 (17)0.0342 (17)0.0089 (15)
C220.0498 (16)0.0595 (18)0.0442 (15)0.0268 (14)0.0198 (13)0.0107 (13)
N230.0581 (15)0.0410 (13)0.0651 (16)0.0119 (11)0.0273 (13)0.0036 (11)
C240.0604 (19)0.0529 (19)0.085 (2)0.0163 (15)0.0339 (18)0.0089 (17)
C250.069 (2)0.091 (3)0.084 (3)0.033 (2)0.037 (2)0.021 (2)
C260.065 (2)0.087 (3)0.101 (3)0.016 (2)0.036 (2)0.039 (2)
C270.080 (2)0.062 (2)0.094 (3)0.0160 (19)0.027 (2)0.029 (2)
C280.076 (2)0.0458 (18)0.073 (2)0.0069 (16)0.0225 (18)0.0026 (16)
Br1—C221.885 (3)C13—C141.390 (4)
S1—O11.423 (2)C13—H130.9300
S1—O21.429 (2)O15—C161.390 (4)
S1—N81.632 (2)C16—H16A0.9600
S1—C11.764 (3)C16—H16B0.9600
S2—C171.769 (3)C16—H16C0.9600
S2—C141.778 (3)C17—N181.313 (3)
C1—C21.374 (4)C17—C221.393 (4)
C1—C61.380 (4)N18—C191.343 (3)
C2—C31.379 (5)C19—N201.350 (3)
C2—H20.9300C19—N231.351 (4)
C3—C41.382 (5)N20—C211.325 (4)
C3—H30.9300C21—C221.365 (4)
C4—C51.370 (5)C21—H210.9300
C4—C71.509 (5)N23—C281.456 (4)
C5—C61.383 (5)N23—C241.467 (4)
C5—H50.9300C24—C251.494 (5)
C6—H60.9300C24—H24A0.9700
C7—H7A0.9600C24—H24B0.9700
C7—H7B0.9600C25—C261.513 (5)
C7—H7C0.9600C25—H25A0.9700
N8—C91.425 (4)C25—H25B0.9700
N8—H80.8600C26—C271.499 (5)
C9—C101.385 (4)C26—H26A0.9700
C9—C141.386 (4)C26—H26B0.9700
C10—C111.371 (5)C27—C281.498 (5)
C10—H100.9300C27—H27A0.9700
C11—C121.380 (4)C27—H27B0.9700
C11—H110.9300C28—H28A0.9700
C12—O151.369 (4)C28—H28B0.9700
C12—C131.376 (4)
O1—S1—O2119.46 (13)O15—C16—H16A109.5
O1—S1—N8108.46 (14)O15—C16—H16B109.5
O2—S1—N8104.72 (13)H16A—C16—H16B109.5
O1—S1—C1107.97 (14)O15—C16—H16C109.5
O2—S1—C1107.66 (14)H16A—C16—H16C109.5
N8—S1—C1108.12 (12)H16B—C16—H16C109.5
C17—S2—C1499.34 (12)N18—C17—C22121.4 (3)
C2—C1—C6120.3 (3)N18—C17—S2119.23 (19)
C2—C1—S1119.8 (2)C22—C17—S2119.4 (2)
C6—C1—S1119.9 (2)C17—N18—C19117.9 (2)
C1—C2—C3119.4 (3)N18—C19—N20125.1 (3)
C1—C2—H2120.3N18—C19—N23116.7 (2)
C3—C2—H2120.3N20—C19—N23118.2 (3)
C2—C3—C4121.5 (3)C21—N20—C19115.0 (3)
C2—C3—H3119.3N20—C21—C22124.3 (3)
C4—C3—H3119.3N20—C21—H21117.8
C5—C4—C3118.0 (3)C22—C21—H21117.8
C5—C4—C7121.0 (4)C21—C22—C17116.3 (3)
C3—C4—C7121.0 (4)C21—C22—Br1122.2 (2)
C4—C5—C6121.7 (3)C17—C22—Br1121.5 (2)
C4—C5—H5119.1C19—N23—C28121.4 (2)
C6—C5—H5119.1C19—N23—C24120.1 (2)
C1—C6—C5119.1 (3)C28—N23—C24115.9 (3)
C1—C6—H6120.4N23—C24—C25111.5 (3)
C5—C6—H6120.4N23—C24—H24A109.3
C4—C7—H7A109.5C25—C24—H24A109.3
C4—C7—H7B109.5N23—C24—H24B109.3
H7A—C7—H7B109.5C25—C24—H24B109.3
C4—C7—H7C109.5H24A—C24—H24B108.0
H7A—C7—H7C109.5C24—C25—C26111.6 (3)
H7B—C7—H7C109.5C24—C25—H25A109.3
C9—N8—S1122.28 (19)C26—C25—H25A109.3
C9—N8—H8118.9C24—C25—H25B109.3
S1—N8—H8118.9C26—C25—H25B109.3
C10—C9—C14118.4 (3)H25A—C25—H25B108.0
C10—C9—N8120.0 (2)C27—C26—C25110.4 (3)
C14—C9—N8121.5 (2)C27—C26—H26A109.6
C11—C10—C9121.4 (3)C25—C26—H26A109.6
C11—C10—H10119.3C27—C26—H26B109.6
C9—C10—H10119.3C25—C26—H26B109.6
C10—C11—C12120.0 (3)H26A—C26—H26B108.1
C10—C11—H11120.0C28—C27—C26112.5 (3)
C12—C11—H11120.0C28—C27—H27A109.1
O15—C12—C13123.8 (3)C26—C27—H27A109.1
O15—C12—C11116.7 (3)C28—C27—H27B109.1
C13—C12—C11119.5 (3)C26—C27—H27B109.1
C12—C13—C14120.4 (3)H27A—C27—H27B107.8
C12—C13—H13119.8N23—C28—C27111.5 (3)
C14—C13—H13119.8N23—C28—H28A109.3
C9—C14—C13120.1 (2)C27—C28—H28A109.3
C9—C14—S2121.1 (2)N23—C28—H28B109.3
C13—C14—S2118.7 (2)C27—C28—H28B109.3
C12—O15—C16118.1 (2)H28A—C28—H28B108.0
O1—S1—C1—C2172.6 (2)C12—C13—C14—S2−178.0 (2)
O2—S1—C1—C242.4 (3)C17—S2—C14—C9−108.1 (2)
N8—S1—C1—C2−70.2 (3)C17—S2—C14—C1371.3 (2)
O1—S1—C1—C6−6.6 (3)C13—C12—O15—C1634.4 (5)
O2—S1—C1—C6−136.8 (2)C11—C12—O15—C16−147.6 (3)
N8—S1—C1—C6110.5 (2)C14—S2—C17—N184.4 (2)
C6—C1—C2—C30.7 (5)C14—S2—C17—C22−174.8 (2)
S1—C1—C2—C3−178.5 (2)C22—C17—N18—C190.0 (4)
C1—C2—C3—C40.6 (5)S2—C17—N18—C19−179.23 (19)
C2—C3—C4—C5−1.0 (5)C17—N18—C19—N203.2 (4)
C2—C3—C4—C7179.5 (3)C17—N18—C19—N23−175.7 (2)
C3—C4—C5—C60.1 (5)N18—C19—N20—C21−3.4 (4)
C7—C4—C5—C6179.6 (3)N23—C19—N20—C21175.5 (3)
C2—C1—C6—C5−1.6 (4)C19—N20—C21—C220.5 (5)
S1—C1—C6—C5177.6 (2)N20—C21—C22—C172.2 (5)
C4—C5—C6—C11.2 (5)N20—C21—C22—Br1−178.8 (2)
O1—S1—N8—C943.7 (2)N18—C17—C22—C21−2.5 (4)
O2—S1—N8—C9172.3 (2)S2—C17—C22—C21176.7 (2)
C1—S1—N8—C9−73.1 (2)N18—C17—C22—Br1178.55 (19)
S1—N8—C9—C10−67.8 (3)S2—C17—C22—Br1−2.3 (3)
S1—N8—C9—C14115.5 (3)N18—C19—N23—C28−173.6 (3)
C14—C9—C10—C11−1.1 (4)N20—C19—N23—C287.4 (4)
N8—C9—C10—C11−177.8 (3)N18—C19—N23—C24−12.3 (4)
C9—C10—C11—C122.5 (5)N20—C19—N23—C24168.7 (3)
C10—C11—C12—O15179.9 (3)C19—N23—C24—C25146.5 (3)
C10—C11—C12—C13−1.9 (5)C28—N23—C24—C25−51.2 (4)
O15—C12—C13—C14178.0 (3)N23—C24—C25—C2652.4 (4)
C11—C12—C13—C140.0 (4)C24—C25—C26—C27−54.7 (4)
C10—C9—C14—C13−0.9 (4)C25—C26—C27—C2854.2 (5)
N8—C9—C14—C13175.8 (2)C19—N23—C28—C27−147.7 (3)
C10—C9—C14—S2178.5 (2)C24—N23—C28—C2750.3 (4)
N8—C9—C14—S2−4.8 (3)C26—C27—C28—N23−51.4 (5)
C12—C13—C14—C91.4 (4)
D—H···AD—HH···AD···AD—H···A
N8—H8···O2i0.862.222.955 (4)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N8—H8⋯O2i 0.862.222.955 (4)143

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-(2-{[5-Bromo-2-(morpholin-4-yl)pyrimidin-4-yl]sulfan-yl}-4-meth-oxy-phen-yl)-4-methyl-benzene-sulfonamide.

Authors:  Rajni Kant; Vivek K Gupta; Kamini Kapoor; Mohan Kumar; L Mallesha; M A Sridhar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-28

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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