Literature DB >> 23125620

(Acetato-κ(2)O,O')[2'-(di-tert-butyl-phosphanyl)-1,1'-biphenyl-κ(2)P,C(2)]palladium(II).

Charmaine Arderne1, Cedric W Holzapfel.   

Abstract

The structure of the title compound, [Pd(C(2)H(3)O(2))(C(20)H(26)P)], shows a distorted square-planar geometry for the Pd(II) atom, with significant deviations being evident owing to the asymmetric coordination mode of the acetate ligand. A weak intra-molecular C-H⋯O inter-action is noted. The crystal studied was a racemic twin.

Entities:  

Year:  2012        PMID: 23125620      PMCID: PMC3470176          DOI: 10.1107/S1600536812040068

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures and catalytic literature on palladium complexes, see: Ormondi et al. (2011 ▶); van Blerk & Holzapfel (2009 ▶); Zim & Buchwald (2005 ▶); Williams et al. (2008 ▶).

Experimental

Crystal data

[Pd(C2H3O2)(C20H26P)] M = 462.82 Orthorhombic, a = 9.800 (3) Å b = 14.2392 (4) Å c = 14.7772 (5) Å V = 2062.1 (6) Å3 Z = 4 Mo Kα radiation μ = 0.99 mm−1 T = 100 K 0.25 × 0.19 × 0.14 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (AXSCALE; Bruker, 2010 ▶) T min = 0.790, T max = 0.874 24048 measured reflections 5179 independent reflections 5077 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.014 wR(F 2) = 0.034 S = 1.06 5179 reflections 243 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.19 e Å−3 Absolute structure: not determined Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812040068/tk5150sup1.cif Supplementary material file. DOI: 10.1107/S1600536812040068/tk5150Isup2.mol Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812040068/tk5150Isup3.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Pd(C2H3O2)(C20H26P)]F(000) = 952
Mr = 462.82Dx = 1.491 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 9242 reflections
a = 9.800 (3) Åθ = 2.5–28.4°
b = 14.2392 (4) ŵ = 0.99 mm1
c = 14.7772 (5) ÅT = 100 K
V = 2062.1 (6) Å3Block, yellow
Z = 40.25 × 0.19 × 0.14 mm
Bruker APEXII CCD diffractometer5179 independent reflections
Radiation source: fine-focus sealed tube5077 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.018
φ andω scansθmax = 28.4°, θmin = 2.0°
Absorption correction: multi-scan (AXSCALE; Bruker, 2010)h = −13→12
Tmin = 0.790, Tmax = 0.874k = −19→17
24048 measured reflectionsl = −19→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.014H-atom parameters constrained
wR(F2) = 0.034w = 1/[σ2(Fo2) + (0.0177P)2 + 0.2811P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.002
5179 reflectionsΔρmax = 0.27 e Å3
243 parametersΔρmin = −0.19 e Å3
0 restraintsAbsolute structure: nd
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.01684 (16)0.64306 (10)0.01415 (9)0.0200 (3)
C2−0.03332 (19)0.70910 (12)−0.05813 (11)0.0296 (4)
H2A0.03530.7580−0.06880.044*
H2B−0.11890.7383−0.03840.044*
H2C−0.04900.6740−0.11420.044*
C3−0.12994 (14)0.36953 (10)0.17962 (10)0.0179 (3)
C4−0.12773 (16)0.35830 (11)0.07523 (10)0.0234 (3)
H4A−0.07210.30360.05900.035*
H4B−0.08860.41480.04770.035*
H4C−0.22110.34930.05300.035*
C5−0.22808 (14)0.45126 (10)0.20099 (10)0.0207 (3)
H5A−0.19560.50850.17120.031*
H5B−0.23140.46130.26660.031*
H5C−0.31960.43580.17880.031*
C6−0.18496 (16)0.27675 (11)0.21887 (11)0.0238 (3)
H6A−0.18240.27950.28510.036*
H6B−0.12830.22450.19780.036*
H6C−0.27920.26730.19870.036*
C70.16700 (15)0.30436 (10)0.21904 (10)0.0190 (3)
C80.15467 (17)0.24809 (11)0.13080 (13)0.0300 (4)
H8A0.15890.29110.07910.045*
H8B0.06750.21440.13010.045*
H8C0.22980.20290.12690.045*
C90.13811 (18)0.24130 (12)0.30108 (13)0.0299 (4)
H9A0.04360.21900.29850.045*
H9B0.15200.27720.35690.045*
H9C0.20030.18740.30020.045*
C100.31527 (15)0.33883 (11)0.22510 (12)0.0238 (3)
H10A0.32810.37390.28150.036*
H10B0.33520.37980.17350.036*
H10C0.37710.28480.22410.036*
C110.03089 (14)0.44692 (9)0.33655 (8)0.0154 (3)
C12−0.07717 (15)0.41959 (11)0.39277 (10)0.0209 (3)
H12−0.13660.37080.37350.025*
C13−0.09954 (16)0.46231 (12)0.47641 (9)0.0246 (3)
H13−0.17520.44430.51270.029*
C14−0.01070 (15)0.53113 (13)0.50607 (9)0.0243 (3)
H14−0.02680.56200.56200.029*
C150.10184 (17)0.55503 (10)0.45413 (9)0.0201 (3)
H150.16460.60030.47650.024*
C160.12513 (13)0.51377 (9)0.36921 (9)0.0163 (3)
C170.24987 (13)0.54179 (10)0.31892 (9)0.0157 (2)
C180.25148 (14)0.55169 (9)0.22435 (9)0.0147 (3)
C190.37097 (15)0.58258 (10)0.18224 (10)0.0190 (3)
H190.37110.59330.11880.023*
C200.48925 (15)0.59791 (11)0.23147 (11)0.0221 (3)
H200.57000.61790.20160.026*
C210.48961 (15)0.58397 (11)0.32458 (11)0.0237 (3)
H210.57100.59260.35850.028*
C220.36993 (14)0.55730 (9)0.36744 (10)0.0204 (3)
H220.36960.54940.43130.024*
O1−0.05113 (11)0.56989 (7)0.03223 (7)0.0211 (2)
O20.12585 (11)0.66066 (7)0.05752 (7)0.0209 (2)
P10.04521 (4)0.40789 (2)0.21866 (2)0.01354 (7)
Pd10.097889 (10)0.536270 (7)0.139786 (6)0.01311 (3)
U11U22U33U12U13U23
C10.0253 (8)0.0188 (7)0.0158 (6)0.0050 (6)0.0024 (6)0.0028 (5)
C20.0350 (9)0.0291 (9)0.0248 (8)0.0055 (7)−0.0017 (7)0.0105 (7)
C30.0173 (7)0.0148 (7)0.0215 (7)−0.0024 (5)−0.0021 (5)−0.0004 (5)
C40.0266 (9)0.0214 (7)0.0223 (7)−0.0019 (6)−0.0036 (6)−0.0044 (6)
C50.0159 (6)0.0219 (8)0.0245 (7)0.0010 (6)−0.0035 (5)−0.0011 (6)
C60.0204 (7)0.0191 (7)0.0318 (8)−0.0050 (6)0.0008 (6)0.0012 (6)
C70.0188 (7)0.0129 (7)0.0253 (7)0.0026 (5)0.0034 (6)0.0028 (5)
C80.0268 (8)0.0208 (8)0.0424 (10)0.0046 (6)0.0002 (8)−0.0107 (7)
C90.0258 (8)0.0221 (8)0.0419 (9)0.0061 (6)0.0066 (7)0.0153 (7)
C100.0191 (7)0.0154 (7)0.0367 (9)0.0035 (6)0.0024 (6)0.0026 (6)
C110.0154 (6)0.0157 (7)0.0151 (6)0.0031 (5)−0.0001 (5)0.0028 (5)
C120.0190 (8)0.0245 (7)0.0191 (6)−0.0029 (6)0.0006 (5)0.0041 (5)
C130.0202 (6)0.0363 (8)0.0173 (6)0.0004 (9)0.0039 (6)0.0052 (6)
C140.0253 (7)0.0332 (8)0.0144 (6)0.0058 (7)0.0015 (5)0.0004 (7)
C150.0206 (6)0.0227 (7)0.0171 (6)0.0017 (6)−0.0037 (6)−0.0005 (5)
C160.0164 (6)0.0163 (6)0.0162 (6)0.0032 (5)−0.0019 (5)0.0043 (5)
C170.0168 (6)0.0104 (6)0.0199 (6)0.0012 (5)0.0009 (5)0.0015 (5)
C180.0165 (6)0.0093 (6)0.0183 (6)0.0014 (5)−0.0005 (5)0.0000 (5)
C190.0211 (8)0.0124 (6)0.0235 (7)0.0004 (5)0.0041 (6)0.0006 (5)
C200.0152 (7)0.0178 (7)0.0331 (8)−0.0019 (6)0.0036 (6)0.0009 (6)
C210.0160 (7)0.0213 (8)0.0338 (8)−0.0006 (6)−0.0039 (6)−0.0008 (6)
C220.0211 (7)0.0181 (7)0.0220 (6)0.0005 (5)−0.0030 (6)−0.0008 (5)
O10.0249 (5)0.0200 (5)0.0185 (5)0.0001 (4)−0.0028 (4)0.0025 (4)
O20.0241 (6)0.0174 (5)0.0211 (5)−0.0008 (4)0.0010 (4)0.0054 (4)
P10.01417 (16)0.01141 (16)0.01505 (15)0.00016 (13)0.00127 (13)0.00109 (12)
Pd10.01529 (5)0.01095 (4)0.01310 (4)0.00049 (4)0.00091 (4)0.00145 (4)
C1—O11.2651 (18)C10—H10B0.9800
C1—O21.2707 (19)C10—H10C0.9800
C1—C21.506 (2)C11—C121.401 (2)
C2—H2A0.9800C11—C161.4114 (19)
C2—H2B0.9800C11—P11.8339 (14)
C2—H2C0.9800C12—C131.395 (2)
C3—C61.540 (2)C12—H120.9500
C3—C51.542 (2)C13—C141.382 (2)
C3—C41.551 (2)C13—H130.9500
C3—P11.8915 (16)C14—C151.386 (2)
C4—H4A0.9800C14—H140.9500
C4—H4B0.9800C15—C161.4043 (19)
C4—H4C0.9800C15—H150.9500
C5—H5A0.9800C16—C171.4852 (19)
C5—H5B0.9800C17—C221.3954 (19)
C5—H5C0.9800C17—C181.4046 (18)
C6—H6A0.9800C18—C191.397 (2)
C6—H6B0.9800C19—C201.386 (2)
C6—H6C0.9800C19—H190.9500
C7—C91.535 (2)C20—C211.390 (2)
C7—C81.535 (2)C20—H200.9500
C7—C101.536 (2)C21—C221.386 (2)
C7—P11.8968 (15)C21—H210.9500
C8—H8A0.9800C22—H220.9500
C8—H8B0.9800Pd1—P12.2285 (7)
C8—H8C0.9800Pd1—O12.2109 (12)
C9—H9A0.9800Pd1—O22.1657 (11)
C9—H9B0.9800Pd1—C12.5278 (15)
C9—H9C0.9800Pd1—C181.9686 (15)
C10—H10A0.9800
O1—C1—O2119.91 (13)C7—C10—H10C109.5
O1—C1—C2119.48 (14)H10A—C10—H10C109.5
O2—C1—C2120.60 (14)H10B—C10—H10C109.5
O1—C1—Pd160.99 (8)C12—C11—C16118.63 (13)
O2—C1—Pd158.94 (7)C12—C11—P1122.48 (11)
C2—C1—Pd1177.93 (11)C16—C11—P1118.63 (10)
C1—C2—H2A109.5C13—C12—C11121.54 (14)
C1—C2—H2B109.5C13—C12—H12119.2
H2A—C2—H2B109.5C11—C12—H12119.2
C1—C2—H2C109.5C14—C13—C12119.42 (14)
H2A—C2—H2C109.5C14—C13—H13120.3
H2B—C2—H2C109.5C12—C13—H13120.3
C6—C3—C5110.60 (12)C13—C14—C15119.98 (14)
C6—C3—C4106.92 (12)C13—C14—H14120.0
C5—C3—C4106.87 (12)C15—C14—H14120.0
C6—C3—P1116.78 (10)C14—C15—C16121.43 (14)
C5—C3—P1106.59 (10)C14—C15—H15119.3
C4—C3—P1108.69 (10)C16—C15—H15119.3
C3—C4—H4A109.5C15—C16—C11118.78 (12)
C3—C4—H4B109.5C15—C16—C17117.94 (12)
H4A—C4—H4B109.5C11—C16—C17123.28 (12)
C3—C4—H4C109.5C22—C17—C18119.07 (13)
H4A—C4—H4C109.5C22—C17—C16118.65 (12)
H4B—C4—H4C109.5C18—C17—C16122.27 (12)
C3—C5—H5A109.5C19—C18—C17118.95 (13)
C3—C5—H5B109.5C19—C18—Pd1113.16 (10)
H5A—C5—H5B109.5C17—C18—Pd1127.72 (10)
C3—C5—H5C109.5C20—C19—C18121.12 (14)
H5A—C5—H5C109.5C20—C19—H19119.4
H5B—C5—H5C109.5C18—C19—H19119.4
C3—C6—H6A109.5C19—C20—C21119.95 (14)
C3—C6—H6B109.5C19—C20—H20120.0
H6A—C6—H6B109.5C21—C20—H20120.0
C3—C6—H6C109.5C22—C21—C20119.28 (14)
H6A—C6—H6C109.5C22—C21—H21120.4
H6B—C6—H6C109.5C20—C21—H21120.4
C9—C7—C8110.54 (13)C21—C22—C17121.48 (14)
C9—C7—C10108.38 (13)C21—C22—H22119.3
C8—C7—C10106.90 (13)C17—C22—H22119.3
C9—C7—P1109.94 (10)C1—O1—Pd188.98 (9)
C8—C7—P1110.71 (11)C1—O2—Pd190.88 (9)
C10—C7—P1110.30 (10)C11—P1—C3107.92 (7)
C7—C8—H8A109.5C11—P1—C7106.31 (6)
C7—C8—H8B109.5C3—P1—C7110.33 (7)
H8A—C8—H8B109.5C11—P1—Pd1105.42 (5)
C7—C8—H8C109.5C3—P1—Pd1106.72 (5)
H8A—C8—H8C109.5C7—P1—Pd1119.56 (5)
H8B—C8—H8C109.5P1—Pd1—O1113.61 (3)
C7—C9—H9A109.5P1—Pd1—O2173.58 (3)
C7—C9—H9B109.5P1—Pd1—C1886.37 (4)
H9A—C9—H9B109.5O1—Pd1—O260.19 (4)
C7—C9—H9C109.5O1—Pd1—C18159.59 (5)
H9A—C9—H9C109.5O2—Pd1—C1899.69 (5)
H9B—C9—H9C109.5C18—Pd1—C1129.74 (5)
C7—C10—H10A109.5O2—Pd1—C130.17 (5)
C7—C10—H10B109.5O1—Pd1—C130.03 (4)
H10A—C10—H10B109.5P1—Pd1—C1143.59 (4)
C16—C11—C12—C135.3 (2)C4—C3—P1—C7−77.17 (11)
P1—C11—C12—C13−168.67 (11)C6—C3—P1—Pd1175.16 (10)
C11—C12—C13—C14−2.1 (2)C5—C3—P1—Pd1−60.68 (10)
C12—C13—C14—C15−2.0 (2)C4—C3—P1—Pd154.18 (10)
C13—C14—C15—C162.9 (2)C9—C7—P1—C1140.82 (13)
C14—C15—C16—C110.3 (2)C8—C7—P1—C11163.24 (11)
C14—C15—C16—C17−178.63 (13)C10—C7—P1—C11−78.65 (11)
C12—C11—C16—C15−4.31 (19)C9—C7—P1—C3−75.95 (12)
P1—C11—C16—C15169.90 (10)C8—C7—P1—C346.47 (12)
C12—C11—C16—C17174.56 (12)C10—C7—P1—C3164.59 (10)
P1—C11—C16—C17−11.24 (18)C9—C7—P1—Pd1159.80 (9)
C15—C16—C17—C2237.76 (18)C8—C7—P1—Pd1−77.78 (11)
C11—C16—C17—C22−141.12 (14)C10—C7—P1—Pd140.34 (12)
C15—C16—C17—C18−143.27 (14)C19—C18—Pd1—O2−41.41 (11)
C11—C16—C17—C1837.9 (2)C17—C18—Pd1—O2133.73 (12)
C22—C17—C18—C19−4.0 (2)C19—C18—Pd1—O1−50.65 (19)
C16—C17—C18—C19177.00 (12)C17—C18—Pd1—O1124.49 (14)
C22—C17—C18—Pd1−178.92 (10)C19—C18—Pd1—P1140.72 (10)
C16—C17—C18—Pd12.1 (2)C17—C18—Pd1—P1−44.15 (12)
C17—C18—C19—C204.0 (2)C19—C18—Pd1—C1−44.46 (13)
Pd1—C18—C19—C20179.56 (11)C17—C18—Pd1—C1130.67 (12)
C18—C19—C20—C21−1.0 (2)C1—O2—Pd1—C18−175.32 (9)
C19—C20—C21—C22−1.8 (2)C1—O2—Pd1—O10.98 (8)
C20—C21—C22—C171.7 (2)C1—O1—Pd1—C189.53 (17)
C18—C17—C22—C211.3 (2)C1—O1—Pd1—O2−0.98 (8)
C16—C17—C22—C21−179.71 (13)C1—O1—Pd1—P1177.14 (7)
O2—C1—O1—Pd11.67 (13)C11—P1—Pd1—C1854.30 (6)
C2—C1—O1—Pd1−177.69 (13)C3—P1—Pd1—C18168.90 (6)
O1—C1—O2—Pd1−1.71 (13)C7—P1—Pd1—C18−65.13 (7)
C2—C1—O2—Pd1177.65 (13)C11—P1—Pd1—O1−121.40 (6)
C12—C11—P1—C320.76 (14)C3—P1—Pd1—O1−6.80 (6)
C16—C11—P1—C3−153.20 (11)C7—P1—Pd1—O1119.17 (7)
C12—C11—P1—C7−97.61 (13)C11—P1—Pd1—C1−118.98 (7)
C16—C11—P1—C788.43 (12)C3—P1—Pd1—C1−4.39 (8)
C12—C11—P1—Pd1134.52 (11)C7—P1—Pd1—C1121.59 (8)
C16—C11—P1—Pd1−39.45 (11)O1—C1—Pd1—C18−175.69 (8)
C6—C3—P1—C11−71.95 (12)O2—C1—Pd1—C186.00 (11)
C5—C3—P1—C1152.21 (11)O1—C1—Pd1—O2178.31 (13)
C4—C3—P1—C11167.07 (10)O2—C1—Pd1—O1−178.31 (13)
C6—C3—P1—C743.81 (13)O1—C1—Pd1—P1−4.42 (11)
C5—C3—P1—C7167.97 (9)O2—C1—Pd1—P1177.27 (6)
D—H···AD—HH···AD···AD—H···A
C4—H4B···O10.982.253.169 (2)156
Pd1—P12.2285 (7)
Pd1—O12.2109 (12)
Pd1—O22.1657 (11)
Pd1—C181.9686 (15)
P1—Pd1—O1113.61 (3)
P1—Pd1—O2173.58 (3)
P1—Pd1—C1886.37 (4)
O1—Pd1—O260.19 (4)
O1—Pd1—C18159.59 (5)
O2—Pd1—C1899.69 (5)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4B⋯O10.982.253.169 (2)156
  5 in total

1.  An air and thermally stable one- component catalyst for the amination of aryl chlorides.

Authors:  Danilo Zim; Stephen L Buchwald
Journal:  Org Lett       Date:  2003-07-10       Impact factor: 6.005

2.  Aluminum triflate as a highly active and efficient nonprotic cocatalyst in the palladium-catalyzed methoxycarbonylation reaction.

Authors:  D Bradley G Williams; Megan L Shaw; Michael J Green; Cedric W Holzapfel
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  trans-Dichloridobis[tris-(4-methoxy-phen-yl)phosphine]palladium(II) benzene monosolvate.

Authors:  Charmaine van Blerk; Cedric W Holzapfel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-07

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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