Literature DB >> 23125606

Bis(1H-benzimidazole-2-carboxyl-ato-κ(2)N(3),O)bis-(ethanol-κO)manganese(II).

Jian-Hua Nie1, Yue-Hua Lin, Chun-Tao Xu.   

Abstract

In the title compound, [Mn(C(8)H(5)N(2)O(2))(2)(C(2)H(5)OH)(2)], the Mn(II) atom is six-coordinated by two N and two O atoms from two 1H-benzimidazole-2-carboxyl-ate (L) ligands and by two O atoms from two ethanol mol-ecules in a distorted octa-hedral geometry. The mean planes of the two L ligands are inclined to each other at 7.6 (1)°. In the crystal, N-H⋯O and O-H⋯O hydrogen bonds link the mol-ecules into layers parallel to the ab plane.

Entities:  

Year:  2012        PMID: 23125606      PMCID: PMC3470162          DOI: 10.1107/S1600536812039475

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Carballo et al. (1996 ▶); Di et al. (2010 ▶); Fan et al. (2011 ▶); Małecki & Maroń (2012 ▶); Rettig et al. (1999 ▶); Saczewski et al. (2006 ▶); Zheng et al. (2011 ▶).

Experimental

Crystal data

[Mn(C8H5N2O2)2(C2H6O)2] M = 469.36 Triclinic, a = 5.4176 (12) Å b = 10.358 (2) Å c = 19.853 (5) Å α = 75.671 (3)° β = 88.294 (3)° γ = 78.230 (3)° V = 1056.4 (4) Å3 Z = 2 Mo Kα radiation μ = 0.67 mm−1 T = 298 K 0.32 × 0.25 × 0.22 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.814, T max = 0.867 5431 measured reflections 3751 independent reflections 2664 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.131 S = 1.06 3751 reflections 282 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.37 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812039475/cv5342sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812039475/cv5342Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mn(C8H5N2O2)2(C2H6O)2]Z = 2
Mr = 469.36F(000) = 486
Triclinic, P1Dx = 1.476 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.4176 (12) ÅCell parameters from 1379 reflections
b = 10.358 (2) Åθ = 2.6–26.0°
c = 19.853 (5) ŵ = 0.67 mm1
α = 75.671 (3)°T = 298 K
β = 88.294 (3)°Block, pink
γ = 78.230 (3)°0.32 × 0.25 × 0.22 mm
V = 1056.4 (4) Å3
Bruker APEXII CCD diffractometer3751 independent reflections
Radiation source: fine-focus sealed tube2664 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
φ and ω scansθmax = 25.3°, θmin = 2.1°
Absorption correction: multi-scan (APEX2; Bruker, 2004)h = −6→6
Tmin = 0.814, Tmax = 0.867k = −12→12
5431 measured reflectionsl = −23→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0642P)2 + 0.1644P] where P = (Fo2 + 2Fc2)/3
3751 reflections(Δ/σ)max < 0.001
282 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.37 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mn10.46488 (9)0.05915 (4)0.74701 (2)0.03348 (18)
O10.8162 (4)−0.08678 (19)0.78515 (11)0.0369 (5)
O60.2473 (4)−0.0469 (2)0.83306 (11)0.0422 (6)
H6A0.0932−0.04330.82330.051*
O50.6780 (4)0.1657 (2)0.66112 (11)0.0461 (6)
H5A0.82990.16250.67300.055*
O30.1113 (4)0.2050 (2)0.71013 (11)0.0368 (5)
O21.0056 (4)−0.3035 (2)0.79681 (12)0.0481 (6)
O4−0.0995 (4)0.4137 (2)0.70807 (12)0.0476 (6)
N40.2721 (5)0.4332 (2)0.80378 (14)0.0402 (7)
H40.16330.50870.79450.048*
N10.4569 (5)−0.1113 (2)0.69784 (13)0.0333 (6)
N30.4673 (5)0.2256 (2)0.79975 (13)0.0334 (6)
N20.6283 (5)−0.3281 (2)0.70541 (13)0.0376 (7)
H20.7302−0.40560.71810.045*
C30.3176 (6)−0.1605 (3)0.65648 (15)0.0329 (7)
C90.0768 (6)0.3172 (3)0.72763 (16)0.0331 (7)
C80.4246 (6)−0.2976 (3)0.66079 (16)0.0355 (8)
C160.4743 (6)0.4005 (3)0.84869 (17)0.0380 (8)
C20.6400 (6)−0.2151 (3)0.72576 (16)0.0322 (7)
C120.8195 (7)0.2074 (3)0.88379 (17)0.0438 (8)
H120.90510.12100.88180.053*
C70.3212 (7)−0.3756 (3)0.62573 (18)0.0473 (9)
H70.3924−0.46680.62950.057*
C150.5634 (8)0.4703 (4)0.89100 (19)0.0552 (10)
H150.47930.55670.89340.066*
C100.2738 (6)0.3254 (3)0.77646 (16)0.0337 (7)
C110.5984 (6)0.2698 (3)0.84512 (16)0.0327 (7)
C40.1007 (7)−0.0984 (3)0.61532 (18)0.0456 (9)
H4A0.0262−0.00770.61190.055*
C50.0011 (7)−0.1746 (4)0.58016 (18)0.0505 (9)
H5−0.1421−0.13440.55210.061*
C10.8394 (6)−0.2038 (3)0.77318 (16)0.0342 (7)
C60.1096 (8)−0.3117 (4)0.58541 (19)0.0544 (10)
H60.0361−0.36050.56090.065*
C130.9074 (7)0.2778 (4)0.92515 (19)0.0548 (10)
H131.05570.23840.95110.066*
C140.7791 (8)0.4069 (4)0.9290 (2)0.0627 (12)
H140.84220.45090.95810.075*
C170.6190 (9)0.2498 (4)0.5940 (2)0.0713 (12)
H17A0.55090.34180.59770.086*
H17B0.77330.25120.56800.086*
C190.3144 (9)−0.1405 (5)0.8966 (2)0.0818 (15)
H19A0.1628−0.14600.92350.098*
H19B0.3765−0.22910.88750.098*
C180.4453 (11)0.2095 (7)0.5564 (2)0.124 (2)
H18A0.29760.19940.58350.187*
H18B0.52050.12420.54630.187*
H18C0.39900.27730.51370.187*
C200.4932 (11)−0.1153 (7)0.9374 (2)0.123 (2)
H20A0.5437−0.19300.97570.185*
H20B0.4227−0.03730.95470.185*
H20C0.6374−0.09820.90990.185*
U11U22U33U12U13U23
Mn10.0294 (3)0.0244 (3)0.0481 (3)0.00030 (19)−0.0057 (2)−0.0157 (2)
O10.0298 (13)0.0262 (11)0.0574 (14)0.0004 (9)−0.0091 (10)−0.0188 (10)
O60.0336 (13)0.0479 (13)0.0476 (14)−0.0115 (11)−0.0036 (10)−0.0131 (11)
O50.0371 (14)0.0578 (15)0.0456 (14)−0.0137 (11)−0.0057 (11)−0.0127 (12)
O30.0317 (13)0.0281 (11)0.0536 (14)−0.0012 (9)−0.0084 (10)−0.0181 (10)
O20.0421 (15)0.0307 (12)0.0695 (16)0.0061 (11)−0.0190 (12)−0.0174 (11)
O40.0412 (15)0.0268 (12)0.0727 (17)0.0047 (11)−0.0160 (12)−0.0157 (11)
N40.0433 (18)0.0220 (13)0.0554 (17)0.0011 (12)−0.0068 (14)−0.0150 (12)
N10.0303 (16)0.0270 (13)0.0434 (15)0.0008 (11)−0.0032 (12)−0.0150 (12)
N30.0307 (15)0.0263 (13)0.0433 (15)−0.0005 (11)−0.0031 (12)−0.0126 (11)
N20.0399 (17)0.0221 (13)0.0530 (17)−0.0018 (12)−0.0056 (13)−0.0162 (12)
C30.0326 (19)0.0312 (16)0.0380 (18)−0.0054 (14)−0.0002 (14)−0.0149 (14)
C90.0323 (19)0.0228 (15)0.0436 (18)−0.0016 (14)0.0002 (14)−0.0104 (14)
C80.0336 (19)0.0331 (17)0.0435 (19)−0.0053 (14)−0.0004 (15)−0.0174 (14)
C160.040 (2)0.0300 (17)0.0450 (19)−0.0051 (15)−0.0039 (16)−0.0119 (15)
C20.0335 (19)0.0209 (15)0.0425 (18)−0.0014 (13)−0.0013 (14)−0.0110 (13)
C120.038 (2)0.0433 (19)0.049 (2)−0.0049 (16)−0.0007 (16)−0.0127 (16)
C70.055 (3)0.0373 (19)0.056 (2)−0.0115 (17)0.0024 (19)−0.0234 (17)
C150.064 (3)0.042 (2)0.069 (3)−0.0064 (19)−0.010 (2)−0.0322 (19)
C100.0329 (19)0.0226 (15)0.0449 (19)−0.0029 (13)0.0014 (14)−0.0096 (13)
C110.0350 (19)0.0278 (16)0.0371 (17)−0.0052 (14)−0.0031 (14)−0.0122 (13)
C40.039 (2)0.0414 (19)0.057 (2)0.0008 (16)−0.0056 (17)−0.0199 (17)
C50.042 (2)0.059 (2)0.053 (2)−0.0095 (18)−0.0128 (18)−0.0189 (19)
C10.0315 (19)0.0249 (16)0.0449 (19)0.0005 (14)−0.0025 (15)−0.0110 (14)
C60.060 (3)0.059 (2)0.056 (2)−0.023 (2)−0.006 (2)−0.026 (2)
C130.046 (2)0.067 (3)0.056 (2)−0.014 (2)−0.0121 (18)−0.020 (2)
C140.071 (3)0.062 (3)0.067 (3)−0.018 (2)−0.017 (2)−0.031 (2)
C170.074 (3)0.069 (3)0.062 (3)−0.014 (2)−0.018 (2)0.002 (2)
C190.079 (3)0.070 (3)0.081 (3)−0.028 (3)−0.036 (3)0.022 (2)
C180.105 (5)0.218 (7)0.059 (3)−0.087 (5)−0.022 (3)−0.004 (4)
C200.111 (5)0.208 (7)0.058 (3)−0.090 (5)−0.027 (3)0.005 (4)
Mn1—O12.197 (2)C16—C111.402 (4)
Mn1—O32.201 (2)C2—C11.494 (4)
Mn1—O52.220 (2)C12—C131.376 (5)
Mn1—N12.227 (2)C12—C111.391 (4)
Mn1—N32.230 (2)C12—H120.9300
Mn1—O62.235 (2)C7—C61.369 (5)
O1—C11.273 (3)C7—H70.9300
O6—C191.393 (4)C15—C141.363 (5)
O6—H6A0.8535C15—H150.9300
O5—C171.405 (4)C4—C51.368 (5)
O5—H5A0.8546C4—H4A0.9300
O3—C91.271 (3)C5—C61.401 (5)
O2—C11.226 (3)C5—H50.9300
O4—C91.226 (3)C6—H60.9300
N4—C101.355 (4)C13—C141.395 (5)
N4—C161.366 (4)C13—H130.9300
N4—H40.8600C14—H140.9300
N1—C21.323 (4)C17—C181.404 (6)
N1—C31.380 (4)C17—H17A0.9700
N3—C101.316 (4)C17—H17B0.9700
N3—C111.378 (4)C19—C201.384 (6)
N2—C21.343 (4)C19—H19A0.9700
N2—C81.371 (4)C19—H19B0.9700
N2—H20.8600C18—H18A0.9600
C3—C41.397 (4)C18—H18B0.9600
C3—C81.403 (4)C18—H18C0.9600
C9—C101.492 (4)C20—H20A0.9600
C8—C71.392 (5)C20—H20B0.9600
C16—C151.388 (4)C20—H20C0.9600
O1—Mn1—O3179.29 (8)C6—C7—H7121.6
O1—Mn1—O589.01 (8)C8—C7—H7121.6
O3—Mn1—O591.60 (8)C14—C15—C16117.3 (3)
O1—Mn1—N176.37 (8)C14—C15—H15121.3
O3—Mn1—N1103.94 (8)C16—C15—H15121.3
O5—Mn1—N193.63 (9)N3—C10—N4112.0 (3)
O1—Mn1—N3103.36 (8)N3—C10—C9123.3 (3)
O3—Mn1—N376.30 (8)N4—C10—C9124.7 (3)
O5—Mn1—N388.43 (9)N3—C11—C12131.0 (3)
N1—Mn1—N3177.92 (9)N3—C11—C16109.1 (3)
O1—Mn1—O691.49 (8)C12—C11—C16119.9 (3)
O3—Mn1—O687.90 (8)C5—C4—C3118.1 (3)
O5—Mn1—O6179.50 (8)C5—C4—H4A120.9
N1—Mn1—O686.45 (9)C3—C4—H4A120.9
N3—Mn1—O691.50 (9)C4—C5—C6121.6 (3)
C1—O1—Mn1116.15 (19)C4—C5—H5119.2
C19—O6—Mn1134.0 (3)C6—C5—H5119.2
C19—O6—H6A109.2O2—C1—O1126.1 (3)
Mn1—O6—H6A115.6O2—C1—C2119.4 (3)
C17—O5—Mn1135.8 (2)O1—C1—C2114.5 (2)
C17—O5—H5A111.0C7—C6—C5121.6 (3)
Mn1—O5—H5A112.8C7—C6—H6119.2
C9—O3—Mn1116.57 (19)C5—C6—H6119.2
C10—N4—C16107.7 (3)C12—C13—C14121.5 (4)
C10—N4—H4126.1C12—C13—H13119.3
C16—N4—H4126.1C14—C13—H13119.3
C2—N1—C3105.3 (2)C15—C14—C13121.6 (4)
C2—N1—Mn1108.91 (19)C15—C14—H14119.2
C3—N1—Mn1144.9 (2)C13—C14—H14119.2
C10—N3—C11105.9 (2)C18—C17—O5114.3 (4)
C10—N3—Mn1109.0 (2)C18—C17—H17A108.7
C11—N3—Mn1145.0 (2)O5—C17—H17A108.7
C2—N2—C8107.6 (2)C18—C17—H17B108.7
C2—N2—H2126.2O5—C17—H17B108.7
C8—N2—H2126.2H17A—C17—H17B107.6
N1—C3—C4131.3 (3)C20—C19—O6117.2 (4)
N1—C3—C8109.2 (3)C20—C19—H19A108.0
C4—C3—C8119.5 (3)O6—C19—H19A108.0
O4—C9—O3125.6 (3)C20—C19—H19B108.0
O4—C9—C10120.1 (3)O6—C19—H19B108.0
O3—C9—C10114.3 (3)H19A—C19—H19B107.2
N2—C8—C7132.4 (3)C17—C18—H18A109.5
N2—C8—C3105.3 (3)C17—C18—H18B109.5
C7—C8—C3122.3 (3)H18A—C18—H18B109.5
N4—C16—C15132.9 (3)C17—C18—H18C109.5
N4—C16—C11105.3 (3)H18A—C18—H18C109.5
C15—C16—C11121.8 (3)H18B—C18—H18C109.5
N1—C2—N2112.6 (3)C19—C20—H20A109.5
N1—C2—C1122.6 (2)C19—C20—H20B109.5
N2—C2—C1124.8 (3)H20A—C20—H20B109.5
C13—C12—C11117.8 (3)C19—C20—H20C109.5
C13—C12—H12121.1H20A—C20—H20C109.5
C11—C12—H12121.1H20B—C20—H20C109.5
C6—C7—C8116.9 (3)
O5—Mn1—O1—C1−104.5 (2)C3—N1—C2—N2−0.1 (4)
N1—Mn1—O1—C1−10.5 (2)Mn1—N1—C2—N2172.0 (2)
N3—Mn1—O1—C1167.4 (2)C3—N1—C2—C1178.4 (3)
O6—Mn1—O1—C175.5 (2)Mn1—N1—C2—C1−9.5 (4)
O1—Mn1—O6—C1916.9 (3)C8—N2—C2—N10.2 (4)
O3—Mn1—O6—C19−162.8 (3)C8—N2—C2—C1−178.3 (3)
N1—Mn1—O6—C1993.1 (3)N2—C8—C7—C6178.8 (4)
N3—Mn1—O6—C19−86.5 (3)C3—C8—C7—C60.9 (5)
O1—Mn1—O5—C17155.4 (3)N4—C16—C15—C14−178.6 (4)
O3—Mn1—O5—C17−24.9 (3)C11—C16—C15—C140.5 (6)
N1—Mn1—O5—C1779.1 (3)C11—N3—C10—N40.5 (4)
N3—Mn1—O5—C17−101.2 (3)Mn1—N3—C10—N4−176.7 (2)
O5—Mn1—O3—C9−81.6 (2)C11—N3—C10—C9−177.6 (3)
N1—Mn1—O3—C9−175.8 (2)Mn1—N3—C10—C95.3 (4)
N3—Mn1—O3—C96.4 (2)C16—N4—C10—N3−1.2 (4)
O6—Mn1—O3—C998.4 (2)C16—N4—C10—C9176.8 (3)
O1—Mn1—N1—C29.8 (2)O4—C9—C10—N3179.7 (3)
O3—Mn1—N1—C2−169.5 (2)O3—C9—C10—N30.0 (5)
O5—Mn1—N1—C297.9 (2)O4—C9—C10—N41.9 (5)
O6—Mn1—N1—C2−82.6 (2)O3—C9—C10—N4−177.9 (3)
O1—Mn1—N1—C3176.6 (4)C10—N3—C11—C12−178.8 (3)
O3—Mn1—N1—C3−2.8 (4)Mn1—N3—C11—C12−3.6 (6)
O5—Mn1—N1—C3−95.3 (4)C10—N3—C11—C160.5 (4)
O6—Mn1—N1—C384.2 (4)Mn1—N3—C11—C16175.7 (3)
O1—Mn1—N3—C10175.0 (2)C13—C12—C11—N3179.8 (3)
O3—Mn1—N3—C10−5.7 (2)C13—C12—C11—C160.5 (5)
O5—Mn1—N3—C1086.4 (2)N4—C16—C11—N3−1.2 (4)
O6—Mn1—N3—C10−93.2 (2)C15—C16—C11—N3179.5 (3)
O1—Mn1—N3—C11−0.2 (4)N4—C16—C11—C12178.2 (3)
O3—Mn1—N3—C11179.1 (4)C15—C16—C11—C12−1.1 (5)
O5—Mn1—N3—C11−88.8 (4)N1—C3—C4—C5−179.1 (3)
O6—Mn1—N3—C1191.7 (4)C8—C3—C4—C5−0.4 (5)
C2—N1—C3—C4178.9 (3)C3—C4—C5—C60.8 (6)
Mn1—N1—C3—C411.9 (6)Mn1—O1—C1—O2−171.0 (3)
C2—N1—C3—C80.0 (3)Mn1—O1—C1—C28.8 (3)
Mn1—N1—C3—C8−167.0 (3)N1—C2—C1—O2−179.3 (3)
Mn1—O3—C9—O4174.7 (3)N2—C2—C1—O2−0.9 (5)
Mn1—O3—C9—C10−5.6 (3)N1—C2—C1—O10.9 (4)
C2—N2—C8—C7−178.4 (4)N2—C2—C1—O1179.3 (3)
C2—N2—C8—C3−0.2 (4)C8—C7—C6—C5−0.5 (6)
N1—C3—C8—N20.1 (4)C4—C5—C6—C7−0.3 (6)
C4—C3—C8—N2−178.9 (3)C11—C12—C13—C140.5 (6)
N1—C3—C8—C7178.5 (3)C16—C15—C14—C130.6 (6)
C4—C3—C8—C7−0.5 (5)C12—C13—C14—C15−1.2 (6)
C10—N4—C16—C15−179.4 (4)Mn1—O5—C17—C18−40.2 (6)
C10—N4—C16—C111.5 (4)Mn1—O6—C19—C2045.1 (7)
D—H···AD—HH···AD···AD—H···A
N2—H2···O4i0.861.962.766 (3)155
N4—H4···O2ii0.861.972.786 (3)158
O5—H5A···O3iii0.851.892.710 (3)161
O6—H6A···O1iv0.851.882.692 (3)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2⋯O4i 0.861.962.766 (3)155
N4—H4⋯O2ii 0.861.972.786 (3)158
O5—H5A⋯O3iii 0.851.892.710 (3)161
O6—H6A⋯O1iv 0.851.882.692 (3)158

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Jun Fan; Song-Liang Cai; Sheng-Run Zheng; Wei-Guang Zhang
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3.  Synthesis, crystal structure and biological activities of copper(II) complexes with chelating bidentate 2-substituted benzimidazole ligands.

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Journal:  J Inorg Biochem       Date:  2006-04-22       Impact factor: 4.155

4.  Aqua-bis(1H-benzimidazole-2-carboxyl-ato-κO,N)zinc(II).

Authors:  Li Li Di; Yue Wang; Guo Wu Lin; Tao Lu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-08

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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