Literature DB >> 23125605

Poly[diaqua-[μ-1,4-bis-(1H-imidazol-1-yl)benzene-κ(2)N(3):N(3')](μ-fumarato-κ(2)O(1):O(4))nickel(II)].

Chang-Xin Bian1, Xiao-Qiang Yao, Yu-Min Song.   

Abstract

In the title compound, [Ni(C(4)H(2)O(4))(C(12)H(10)N(4))(H(2)O)(2)](n), the Ni(II) ion has a distorted octa-hedral coordination geometry. The asymmetric unit is composed of an Ni(2+) ion, located on a twofold rotation axis, one half of a 1,4-bis-(1H-imidazol-1-yl)benzene (BIMB) ligand and one half of a fumarte (fum(2-)) dianion, both ligands being located about inversion centers, and a coordinating water mol-ecule. The Ni(II) ions are linked by two BIMB ligands and two fum(2-) dianions, forming a four-connected layered structure parallel to (010) with a 4(4)-sql topology. Within each layer, there are rhombic grids with dimensions of ca 13.5 × 9.0 Å and approximate angles of 109 and 70°. The crystal packing features a two-dimensional → two-dimensional parallel/parallel interpenetration in which one undulating layer is catenated to another equivalent one, forming a new bilayer. Moreover, the entangled two-dimensional layers are connected by O-H⋯O and C-H⋯O hydrogen bonds, generating a three-dimensional structure.

Entities:  

Year:  2012        PMID: 23125605      PMCID: PMC3470161          DOI: 10.1107/S1600536812038895

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For multi-dimensional coordination polymers and their applications, see: Batten & Robson (1998 ▶); Carlucci et al. (2003a ▶,b ▶); Moulton & Zaworotko (2001 ▶); Sun et al. (2006 ▶); Wu et al. (2011 ▶); Bu et al. (2004 ▶). For their potential applications in electron transfer and drug delivery, see: Harriman & Sauvage (1996 ▶); Raymo & Sauvage (1999 ▶). For the structures of some related compounds, see: Chen et al. (2010 ▶); Li et al. (2012 ▶); Bu et al. (2004 ▶).

Experimental

Crystal data

[Ni(C4H2O4)(C12H10N4)(H2O)2] M = 419.04 Orthorhombic, a = 11.2806 (4) Å b = 16.3703 (7) Å c = 9.0253 (3) Å V = 1666.67 (11) Å3 Z = 4 Mo Kα radiation μ = 1.21 mm−1 T = 296 K 0.23 × 0.22 × 0.20 mm

Data collection

Bruke APEXII CCD area-dector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.768, T max = 0.794 8512 measured reflections 2108 independent reflections 1827 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.093 S = 1.08 2108 reflections 123 parameters 2 restraints H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.48 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: SHELXTL and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812038895/su2481sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812038895/su2481Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C4H2O4)(C12H10N4)(H2O)2]F(000) = 864
Mr = 419.04Dx = 1.670 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 4217 reflections
a = 11.2806 (4) Åθ = 2.5–28.4°
b = 16.3703 (7) ŵ = 1.21 mm1
c = 9.0253 (3) ÅT = 296 K
V = 1666.67 (11) Å3Block, green
Z = 40.23 × 0.22 × 0.20 mm
Bruke APEXII CCD area-dector diffractometer2108 independent reflections
Radiation source: fine-focus sealed tube1827 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.019
CCD rotation images, thin slices scansθmax = 28.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −13→15
Tmin = 0.768, Tmax = 0.794k = −18→21
8512 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.047P)2 + 1.0911P] where P = (Fo2 + 2Fc2)/3
2108 reflections(Δ/σ)max < 0.001
123 parametersΔρmax = 0.36 e Å3
2 restraintsΔρmin = −0.48 e Å3
Experimental. Spectroscopic data for the title compound :IR (KBr, cm-1): 3380m, 3133m, 1564s, 1533s, 1385s, 1307w, 1269w, 1130w, 1195w, 1074m, 970w, 880w, 829m, 751m, 682w, 656w, 534w, 495w.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.85967 (16)0.48653 (12)0.8087 (2)0.0337 (4)
H10.91270.50690.87850.040*
C20.76108 (18)0.52549 (13)0.7609 (2)0.0353 (4)
H20.73440.57680.78990.042*
C30.77741 (16)0.40688 (11)0.6505 (2)0.0294 (4)
H30.76160.36270.58890.035*
C40.57558 (18)0.56487 (12)0.5293 (3)0.0409 (5)
H40.62660.60820.54870.049*
C50.60153 (15)0.48748 (11)0.5802 (2)0.0290 (4)
C60.52718 (19)0.42289 (12)0.5509 (3)0.0408 (5)
H60.54610.37090.58510.049*
C71.08521 (15)0.29993 (11)0.43626 (19)0.0266 (3)
C81.05530 (18)0.30159 (14)0.2748 (2)0.0348 (4)
H81.11690.30270.20640.042*
N10.86960 (13)0.41195 (10)0.73829 (16)0.0261 (3)
N20.70833 (13)0.47384 (9)0.66080 (18)0.0288 (3)
Ni11.00000.323481 (18)0.75000.01981 (12)
O11.00329 (10)0.31848 (9)0.52371 (16)0.0310 (3)
O21.18776 (11)0.27709 (9)0.47076 (14)0.0347 (3)
O30.86671 (12)0.23178 (8)0.74938 (13)0.0291 (3)
H3Y0.82140.23830.82370.044*
H3X0.82640.23560.67010.044*
U11U22U33U12U13U23
C10.0277 (8)0.0378 (10)0.0358 (10)0.0029 (7)−0.0078 (8)−0.0101 (8)
C20.0317 (9)0.0328 (9)0.0414 (11)0.0050 (8)−0.0073 (8)−0.0121 (8)
C30.0260 (8)0.0294 (9)0.0327 (9)0.0065 (7)−0.0078 (7)−0.0043 (7)
C40.0341 (10)0.0268 (9)0.0617 (14)0.0004 (7)−0.0200 (10)−0.0014 (9)
C50.0221 (8)0.0304 (9)0.0344 (9)0.0059 (6)−0.0081 (7)−0.0022 (7)
C60.0358 (10)0.0244 (8)0.0621 (14)0.0050 (7)−0.0197 (10)0.0031 (9)
C70.0272 (8)0.0337 (9)0.0189 (7)0.0008 (7)−0.0008 (6)−0.0015 (7)
C80.0321 (10)0.0489 (11)0.0233 (8)0.0010 (9)0.0014 (7)0.0001 (8)
N10.0212 (7)0.0307 (8)0.0266 (7)0.0027 (6)−0.0046 (5)−0.0025 (6)
N20.0230 (7)0.0287 (7)0.0346 (8)0.0049 (6)−0.0086 (6)−0.0031 (6)
Ni10.01593 (17)0.02772 (18)0.01579 (17)0.000−0.00177 (9)0.000
O10.0255 (6)0.0512 (9)0.0164 (6)0.0054 (5)−0.0009 (4)−0.0025 (5)
O20.0270 (6)0.0532 (8)0.0238 (6)0.0093 (6)0.0004 (5)−0.0013 (6)
O30.0263 (6)0.0357 (7)0.0253 (7)−0.0042 (5)−0.0021 (5)−0.0035 (5)
C1—C21.353 (3)C6—H60.9300
C1—N11.381 (2)C7—O11.253 (2)
C1—H10.9300C7—O21.255 (2)
C2—N21.373 (2)C7—C81.496 (3)
C2—H20.9300C8—C8ii1.326 (4)
C3—N11.310 (2)C8—H80.9300
C3—N21.348 (2)N1—Ni12.0670 (15)
C3—H30.9300Ni1—O12.0443 (15)
C4—C51.379 (3)Ni1—O1iii2.0443 (15)
C4—C6i1.381 (3)Ni1—N1iii2.0671 (15)
C4—H40.9300Ni1—O3iii2.1247 (13)
C5—C61.375 (3)Ni1—O32.1247 (13)
C5—N21.425 (2)O3—H3Y0.8500
C6—C4i1.381 (3)O3—H3X0.8501
C2—C1—N1109.66 (16)C3—N1—Ni1123.47 (13)
C2—C1—H1125.2C1—N1—Ni1130.81 (12)
N1—C1—H1125.2C3—N2—C2107.19 (15)
C1—C2—N2106.02 (17)C3—N2—C5125.53 (15)
C1—C2—H2127.0C2—N2—C5127.28 (15)
N2—C2—H2127.0O1—Ni1—O1iii175.41 (8)
N1—C3—N2111.46 (16)O1—Ni1—N189.42 (5)
N1—C3—H3124.3O1iii—Ni1—N193.80 (5)
N2—C3—H3124.3O1—Ni1—N1iii93.79 (5)
C5—C4—C6i119.07 (18)O1iii—Ni1—N1iii89.42 (5)
C5—C4—H4120.5N1—Ni1—N1iii91.04 (9)
C6i—C4—H4120.5O1—Ni1—O3iii87.80 (5)
C6—C5—C4120.85 (16)O1iii—Ni1—O3iii88.96 (5)
C6—C5—N2119.55 (16)N1—Ni1—O3iii177.19 (5)
C4—C5—N2119.57 (16)N1iii—Ni1—O3iii89.51 (6)
C5—C6—C4i120.07 (18)O1—Ni1—O388.96 (5)
C5—C6—H6120.0O1iii—Ni1—O387.79 (5)
C4i—C6—H6120.0N1—Ni1—O389.50 (6)
O1—C7—O2126.58 (16)N1iii—Ni1—O3177.19 (5)
O1—C7—C8116.29 (16)O3iii—Ni1—O390.09 (8)
O2—C7—C8117.06 (16)C7—O1—Ni1130.74 (12)
C8ii—C8—C7122.8 (2)Ni1—O3—H3Y109.6
C8ii—C8—H8118.6Ni1—O3—H3X109.3
C7—C8—H8118.6H3Y—O3—H3X109.5
C3—N1—C1105.67 (15)
N1—C1—C2—N20.8 (2)C4—C5—N2—C236.9 (3)
C6i—C4—C5—C60.6 (4)C3—N1—Ni1—O145.30 (16)
C6i—C4—C5—N2178.9 (2)C1—N1—Ni1—O1−131.70 (17)
C4—C5—C6—C4i−0.6 (4)C3—N1—Ni1—O1iii−131.42 (15)
N2—C5—C6—C4i−178.9 (2)C1—N1—Ni1—O1iii51.58 (17)
O1—C7—C8—C8ii−16.9 (2)C3—N1—Ni1—N1iii139.09 (17)
O2—C7—C8—C8ii160.34 (12)C1—N1—Ni1—N1iii−37.91 (15)
N2—C3—N1—C1−0.2 (2)C3—N1—Ni1—O3iii38.0 (12)
N2—C3—N1—Ni1−177.88 (12)C1—N1—Ni1—O3iii−139.0 (10)
C2—C1—N1—C3−0.4 (2)C3—N1—Ni1—O3−43.66 (15)
C2—C1—N1—Ni1177.04 (15)C1—N1—Ni1—O3139.33 (17)
N1—C3—N2—C20.7 (2)O2—C7—O1—Ni12.1 (3)
N1—C3—N2—C5−179.97 (17)C8—C7—O1—Ni1179.05 (13)
C1—C2—N2—C3−0.9 (2)O1iii—Ni1—O1—C7−73.40 (17)
C1—C2—N2—C5179.80 (19)N1—Ni1—O1—C7152.04 (17)
C6—C5—N2—C336.0 (3)N1iii—Ni1—O1—C761.04 (17)
C4—C5—N2—C3−142.3 (2)O3iii—Ni1—O1—C7−28.32 (17)
C6—C5—N2—C2−144.8 (2)O3—Ni1—O1—C7−118.44 (17)
D—H···AD—HH···AD···AD—H···A
O3—H3Y···O2iii0.851.962.7033 (18)146
O3—H3X···O2iv0.852.032.8361 (18)159
C3—H3···O2iv0.932.493.360 (2)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3Y⋯O2i 0.851.962.7033 (18)146
O3—H3X⋯O2ii 0.852.032.8361 (18)159
C3—H3⋯O2ii 0.932.493.360 (2)155

Symmetry codes: (i) ; (ii) .

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