Literature DB >> 23125596

Bis[4-amino-3,5-bis-(pyridin-2-yl)-4H-1,2,4-triazole-κ(2)N(1),N(5)]diaqua-cobalt(II) bis-(perchlorate).

Mi Feng1, Yu-Fei Ji, Sheng-Li Liang, Zhi-Liang Liu.   

Abstract

In the title structure, [Co(C(12)H(10)N(6))(2)(H(2)O)(2)](ClO(4))(2), the Co(II) atom lies on an inversion centre and is coordinated in a slightly distorted octa-hedral geometry by four N atoms from two 4-amino-3,5-bis-(pyridin-2-yl)-4H-1,2,4-triazole (adpt) ligands in equatorial positions and two O atoms from two water mol-ecules in axial positions. An intra-molecular N-H⋯N inter-action stabilizes the mol-ecular conformation. Inter-molecular N-H⋯O and O-H⋯O inter-actions involving the perchlorate counter-anions extend the monomeric compound into a two-dimensional network parallel to the bc plane.

Entities:  

Year:  2012        PMID: 23125596      PMCID: PMC3470152          DOI: 10.1107/S1600536812038573

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the adpt ligand, see: Geldard & Lions (1965 ▶). For background to the coordination chemistry of the adpt ligand, see: Meng et al. (2009 ▶). For intra­molecular hydrogen bonds in the adpt ligand, see: Kitchen et al. (2008 ▶). For other Co(II) coordination compounds with the same ligand, see: Keij et al. (1984 ▶); Peng et al. (2006 ▶); García-Couceiro et al. (2009 ▶); White et al. (2010 ▶).

Experimental

Crystal data

[Co(C12H10N6)2(H2O)2](ClO4)2 M = 770.38 Monoclinic, a = 8.5839 (17) Å b = 12.950 (3) Å c = 14.975 (5) Å β = 114.34 (2)° V = 1516.7 (7) Å3 Z = 2 Mo Kα radiation μ = 0.82 mm−1 T = 293 K 0.04 × 0.03 × 0.01 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.971, T max = 0.992 10155 measured reflections 2681 independent reflections 2336 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.121 S = 1.07 2681 reflections 223 parameters H-atom parameters constrained Δρmax = 0.87 e Å−3 Δρmin = −0.50 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812038573/wm2664sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812038573/wm2664Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C12H10N6)2(H2O)2](ClO4)2F(000) = 786
Mr = 770.38Dx = 1.687 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3601 reflections
a = 8.5839 (17) Åθ = 2.2–27.9°
b = 12.950 (3) ŵ = 0.82 mm1
c = 14.975 (5) ÅT = 293 K
β = 114.34 (2)°Block, dark red
V = 1516.7 (7) Å30.04 × 0.03 × 0.01 mm
Z = 2
Bruker SMART APEX CCD diffractometer2681 independent reflections
Radiation source: fine-focus sealed tube2336 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.038
ω scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −7→10
Tmin = 0.971, Tmax = 0.992k = −15→15
10155 measured reflectionsl = −17→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0587P)2 + 2.3812P] where P = (Fo2 + 2Fc2)/3
2681 reflections(Δ/σ)max < 0.001
223 parametersΔρmax = 0.87 e Å3
0 restraintsΔρmin = −0.50 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.50000.50000.50000.0181 (2)
Cl10.51836 (11)0.31957 (6)0.20373 (6)0.0255 (2)
N10.2655 (3)0.5819 (2)0.46508 (18)0.0182 (6)
N20.7370 (3)0.6987 (2)0.59168 (19)0.0203 (6)
N30.5833 (3)0.64755 (19)0.55294 (19)0.0188 (6)
N40.5287 (3)0.80947 (19)0.56599 (18)0.0165 (6)
N50.7829 (4)0.9719 (2)0.6482 (2)0.0247 (6)
N60.4322 (4)0.9001 (2)0.5607 (2)0.0295 (7)
H6A0.39840.92780.50120.044*
H6B0.49710.94520.60540.044*
O10.5064 (3)0.54303 (18)0.36619 (16)0.0287 (6)
H1A0.59520.51770.36280.043*
H1B0.50930.60850.36300.043*
O20.6254 (4)0.2589 (3)0.1740 (3)0.0633 (10)
O30.4116 (4)0.3823 (2)0.1213 (2)0.0555 (9)
O40.6210 (4)0.3837 (2)0.2840 (2)0.0475 (8)
O50.4126 (4)0.2533 (3)0.2297 (2)0.0687 (11)
C10.2804 (4)0.6823 (2)0.4928 (2)0.0181 (7)
C20.1401 (4)0.7437 (3)0.4777 (2)0.0229 (7)
H20.15370.81230.49770.027*
C3−0.0217 (4)0.7004 (3)0.4318 (3)0.0273 (8)
H3−0.11840.73980.42110.033*
C4−0.0381 (4)0.5988 (3)0.4024 (2)0.0261 (8)
H4−0.14570.56920.37040.031*
C50.1082 (4)0.5415 (3)0.4210 (2)0.0228 (7)
H50.09690.47240.40230.027*
C60.4598 (4)0.7148 (2)0.5385 (2)0.0171 (7)
C70.7014 (4)0.7965 (2)0.5981 (2)0.0190 (7)
C80.8325 (4)0.8777 (2)0.6329 (2)0.0205 (7)
C90.9991 (4)0.8547 (3)0.6470 (3)0.0285 (8)
H91.02930.78790.63780.034*
C101.1191 (5)0.9332 (3)0.6750 (3)0.0334 (9)
H101.23070.92070.68280.040*
C111.0696 (5)1.0310 (3)0.6914 (3)0.0313 (8)
H111.14771.08510.71070.038*
C120.9036 (5)1.0464 (3)0.6786 (3)0.0287 (8)
H120.87261.11160.69150.034*
U11U22U33U12U13U23
Co10.0183 (3)0.0139 (3)0.0231 (3)−0.0002 (2)0.0096 (3)−0.0014 (2)
Cl10.0309 (5)0.0211 (4)0.0282 (5)−0.0011 (3)0.0160 (4)−0.0031 (3)
N10.0186 (14)0.0168 (14)0.0212 (13)−0.0010 (11)0.0103 (11)0.0001 (11)
N20.0157 (14)0.0183 (14)0.0245 (14)−0.0012 (11)0.0058 (12)−0.0021 (11)
N30.0174 (14)0.0143 (13)0.0244 (14)0.0001 (11)0.0083 (12)−0.0013 (11)
N40.0191 (14)0.0131 (13)0.0185 (13)0.0010 (10)0.0091 (11)−0.0003 (10)
N50.0233 (15)0.0187 (14)0.0297 (16)−0.0012 (12)0.0086 (13)−0.0012 (12)
N60.0262 (16)0.0185 (15)0.0424 (18)0.0023 (12)0.0128 (14)−0.0011 (13)
O10.0389 (15)0.0206 (12)0.0312 (13)0.0066 (11)0.0191 (12)0.0034 (10)
O20.0474 (19)0.070 (2)0.073 (2)0.0008 (17)0.0256 (17)−0.0440 (19)
O30.062 (2)0.0395 (18)0.0509 (18)0.0045 (16)0.0092 (16)0.0161 (14)
O40.0537 (19)0.0519 (18)0.0393 (16)−0.0126 (15)0.0217 (14)−0.0229 (14)
O50.060 (2)0.096 (3)0.0425 (18)−0.046 (2)0.0130 (16)0.0131 (18)
C10.0217 (17)0.0179 (16)0.0181 (16)−0.0007 (13)0.0116 (14)0.0017 (12)
C20.0237 (18)0.0196 (17)0.0283 (18)0.0016 (14)0.0138 (15)−0.0002 (14)
C30.0205 (18)0.0293 (19)0.035 (2)0.0053 (15)0.0145 (16)0.0059 (15)
C40.0165 (17)0.032 (2)0.0295 (18)−0.0049 (15)0.0090 (15)−0.0010 (15)
C50.0240 (18)0.0206 (17)0.0268 (17)−0.0019 (14)0.0134 (15)−0.0012 (14)
C60.0212 (17)0.0156 (16)0.0175 (15)−0.0007 (13)0.0109 (13)0.0007 (12)
C70.0218 (17)0.0181 (16)0.0193 (16)−0.0002 (13)0.0107 (14)0.0002 (13)
C80.0214 (17)0.0196 (17)0.0198 (16)−0.0013 (13)0.0077 (14)−0.0007 (13)
C90.0248 (19)0.0256 (19)0.0339 (19)−0.0015 (15)0.0111 (16)−0.0073 (15)
C100.0230 (19)0.039 (2)0.038 (2)−0.0043 (16)0.0120 (17)−0.0086 (17)
C110.028 (2)0.029 (2)0.031 (2)−0.0115 (16)0.0065 (16)−0.0048 (16)
C120.029 (2)0.0191 (18)0.0338 (19)−0.0032 (15)0.0089 (16)−0.0063 (15)
Co1—N32.079 (3)N6—H6B0.8901
Co1—N3i2.079 (3)O1—H1A0.8500
Co1—O1i2.102 (2)O1—H1B0.8500
Co1—O12.102 (2)C1—C21.381 (4)
Co1—N12.141 (3)C1—C61.466 (4)
Co1—N1i2.141 (3)C2—C31.389 (5)
Cl1—O21.413 (3)C2—H20.9300
Cl1—O51.416 (3)C3—C41.376 (5)
Cl1—O41.428 (3)C3—H30.9300
Cl1—O31.446 (3)C4—C51.385 (5)
N1—C51.341 (4)C4—H40.9300
N1—C11.355 (4)C5—H50.9300
N2—C71.316 (4)C7—C81.470 (4)
N2—N31.372 (4)C8—C91.389 (5)
N3—C61.319 (4)C9—C101.384 (5)
N4—C61.350 (4)C9—H90.9300
N4—C71.367 (4)C10—C111.390 (5)
N4—N61.420 (4)C10—H100.9300
N5—C81.342 (4)C11—C121.372 (5)
N5—C121.350 (5)C11—H110.9300
N6—H6A0.8901C12—H120.9300
N3—Co1—N3i180.0H1A—O1—H1B109.5
N3—Co1—O1i91.15 (10)N1—C1—C2122.4 (3)
N3i—Co1—O1i88.85 (10)N1—C1—C6111.5 (3)
N3—Co1—O188.85 (10)C2—C1—C6126.1 (3)
N3i—Co1—O191.15 (10)C1—C2—C3118.4 (3)
O1i—Co1—O1180.000 (1)C1—C2—H2120.8
N3—Co1—N177.24 (10)C3—C2—H2120.8
N3i—Co1—N1102.76 (10)C4—C3—C2119.6 (3)
O1i—Co1—N188.45 (9)C4—C3—H3120.2
O1—Co1—N191.55 (9)C2—C3—H3120.2
N3—Co1—N1i102.76 (10)C3—C4—C5119.0 (3)
N3i—Co1—N1i77.24 (10)C3—C4—H4120.5
O1i—Co1—N1i91.55 (9)C5—C4—H4120.5
O1—Co1—N1i88.45 (9)N1—C5—C4122.3 (3)
N1—Co1—N1i180.000 (1)N1—C5—H5118.8
O2—Cl1—O5108.9 (3)C4—C5—H5118.8
O2—Cl1—O4109.47 (19)N3—C6—N4109.2 (3)
O5—Cl1—O4111.4 (2)N3—C6—C1120.4 (3)
O2—Cl1—O3108.0 (2)N4—C6—C1130.3 (3)
O5—Cl1—O3108.8 (2)N2—C7—N4110.1 (3)
O4—Cl1—O3110.2 (2)N2—C7—C8123.2 (3)
C5—N1—C1118.3 (3)N4—C7—C8126.7 (3)
C5—N1—Co1125.6 (2)N5—C8—C9123.3 (3)
C1—N1—Co1116.1 (2)N5—C8—C7117.4 (3)
C7—N2—N3106.5 (3)C9—C8—C7119.3 (3)
C6—N3—N2108.6 (2)C10—C9—C8118.7 (3)
C6—N3—Co1114.6 (2)C10—C9—H9120.7
N2—N3—Co1136.4 (2)C8—C9—H9120.7
C6—N4—C7105.7 (3)C9—C10—C11118.7 (3)
C6—N4—N6124.2 (3)C9—C10—H10120.7
C7—N4—N6130.1 (3)C11—C10—H10120.7
C8—N5—C12117.0 (3)C12—C11—C10118.9 (3)
N4—N6—H6A109.3C12—C11—H11120.6
N4—N6—H6B109.2C10—C11—H11120.6
H6A—N6—H6B109.5N5—C12—C11123.5 (3)
Co1—O1—H1A109.3N5—C12—H12118.2
Co1—O1—H1B109.3C11—C12—H12118.2
N3—Co1—N1—C5−179.1 (3)Co1—N3—C6—N4−173.37 (18)
N3i—Co1—N1—C50.9 (3)N2—N3—C6—C1176.9 (3)
O1i—Co1—N1—C5−87.5 (3)Co1—N3—C6—C13.0 (4)
O1—Co1—N1—C592.5 (3)C7—N4—C6—N30.0 (3)
N3—Co1—N1—C1−0.9 (2)N6—N4—C6—N3−179.7 (3)
N3i—Co1—N1—C1179.1 (2)C7—N4—C6—C1−175.8 (3)
O1i—Co1—N1—C190.7 (2)N6—N4—C6—C14.4 (5)
O1—Co1—N1—C1−89.3 (2)N1—C1—C6—N3−3.6 (4)
C7—N2—N3—C6−1.0 (3)C2—C1—C6—N3176.9 (3)
C7—N2—N3—Co1171.1 (2)N1—C1—C6—N4171.8 (3)
O1i—Co1—N3—C6−89.3 (2)C2—C1—C6—N4−7.7 (5)
O1—Co1—N3—C690.7 (2)N3—N2—C7—N41.0 (3)
N1—Co1—N3—C6−1.1 (2)N3—N2—C7—C8−177.6 (3)
N1i—Co1—N3—C6178.9 (2)C6—N4—C7—N2−0.6 (3)
O1i—Co1—N3—N299.0 (3)N6—N4—C7—N2179.1 (3)
O1—Co1—N3—N2−81.0 (3)C6—N4—C7—C8177.8 (3)
N1—Co1—N3—N2−172.8 (3)N6—N4—C7—C8−2.4 (5)
N1i—Co1—N3—N27.2 (3)C12—N5—C8—C90.2 (5)
C5—N1—C1—C20.3 (4)C12—N5—C8—C7−178.9 (3)
Co1—N1—C1—C2−178.0 (2)N2—C7—C8—N5−171.5 (3)
C5—N1—C1—C6−179.2 (3)N4—C7—C8—N510.2 (5)
Co1—N1—C1—C62.5 (3)N2—C7—C8—C99.4 (5)
N1—C1—C2—C3−0.4 (5)N4—C7—C8—C9−169.0 (3)
C6—C1—C2—C3179.1 (3)N5—C8—C9—C10−2.3 (5)
C1—C2—C3—C4−0.4 (5)C7—C8—C9—C10176.8 (3)
C2—C3—C4—C51.3 (5)C8—C9—C10—C112.3 (5)
C1—N1—C5—C40.6 (5)C9—C10—C11—C12−0.4 (5)
Co1—N1—C5—C4178.8 (2)C8—N5—C12—C111.9 (5)
C3—C4—C5—N1−1.4 (5)C10—C11—C12—N5−1.8 (6)
N2—N3—C6—N40.6 (3)
D—H···AD—HH···AD···AD—H···A
N6—H6B···N50.892.292.897 (4)125
N6—H6B···O3ii0.892.392.989 (4)124
O1—H1A···O40.852.162.782 (4)130
O1—H1B···O2iii0.852.222.983 (4)150
O1—H1B···O5iii0.852.583.284 (5)141
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N6—H6B⋯N50.892.292.897 (4)125
N6—H6B⋯O3i 0.892.392.989 (4)124
O1—H1A⋯O40.852.162.782 (4)130
O1—H1B⋯O2ii 0.852.222.983 (4)150
O1—H1B⋯O5ii 0.852.583.284 (5)141

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Towards Langmuir-Blodgett films of magnetically interesting materials: solution equilibria in amphiphilic iron(II) complexes of a triazole-containing ligand.

Authors:  Nicholas G White; Humphrey L C Feltham; Claudio Gandolfi; Martin Albrecht; Sally Brooker
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3.  High and low spin mononuclear and dinuclear iron(II) complexes of 4-amino and 4-pyrrolyl-3,5-di(2-pyridyl)-4H-1,2,4-triazoles.

Authors:  Jonathan A Kitchen; Andy Noble; Carsten D Brandt; Boujemaa Moubaraki; Keith S Murray; Sally Brooker
Journal:  Inorg Chem       Date:  2008-09-23       Impact factor: 5.165

4.  Reactivity of 4-amino-3,5-bis(pyridin-2-yl)-1,2,4-triazole, structures and magnetic properties of polynuclear and polymeric Mn(II), Cu(II) and Cd(II) complexes.

Authors:  Zhao-Sha Meng; Lei Yun; Wei-Xiong Zhang; Chao-Gang Hong; Radovan Herchel; Yong-Cong Ou; Ji-Dong Leng; Meng-Xia Peng; Zhuo-Jia Lin; Ming-Liang Tong
Journal:  Dalton Trans       Date:  2009-10-19       Impact factor: 4.390

  4 in total

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