Literature DB >> 23124209

Detection of reaction intermediates during human cystathionine β-synthase-monitored turnover and H2S production.

Pramod Kumar Yadav1, Ruma Banerjee.   

Abstract

Human cystathionine β-synthase (CBS), a novel heme-containing pyridoxal 5'-phosphate enzyme, catalyzes the condensation of homocysteine and serine or cysteine to produce cystathionine and H(2)O or H(2)S, respectively. The presence of heme in CBS has limited spectrophotometric characterization of reaction intermediates by masking the absorption of the pyridoxal 5'-phosphate cofactor. In this study, we employed difference stopped-flow spectroscopy to characterize reaction intermediates formed under catalytic turnover conditions. The reactions of L-serine and L-cysteine with CBS resulted in the formation of a common aminoacrylate intermediate (k(obs) = 0.96 ± 0.02 and 0.38 ± 0.01 mM(-1) s(-1), respectively, at 24 °C) with concomitant loss of H(2)O and H(2)S and without detectable accumulation of the external aldimine or other intermediates. Homocysteine reacted with the aminoacrylate intermediate with k(obs) = 40.6 ± 3.8 s(-1) and re-formed the internal aldimine. In the reverse direction, CBS reacted with cystathionine, forming the aminoacrylate intermediate with k(obs) = 0.38 ± 0.01 mM(-1) s(-1). This study provides the first insights into the pre-steady-state kinetic mechanism of human CBS and indicates that the reaction is likely to be limited by a conformational change leading to product release.

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Year:  2012        PMID: 23124209      PMCID: PMC3527933          DOI: 10.1074/jbc.M112.414722

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  30 in total

1.  Structure and control of pyridoxal phosphate dependent allosteric threonine deaminase.

Authors:  D T Gallagher; G L Gilliland; G Xiao; J Zondlo; K E Fisher; D Chinchilla; E Eisenstein
Journal:  Structure       Date:  1998-04-15       Impact factor: 5.006

2.  Characterization of the heme and pyridoxal phosphate cofactors of human cystathionine beta-synthase reveals nonequivalent active sites.

Authors:  S Taoka; M West; R Banerjee
Journal:  Biochemistry       Date:  1999-03-02       Impact factor: 3.162

3.  Evidence for heme-mediated redox regulation of human cystathionine beta-synthase activity.

Authors:  S Taoka; S Ohja; X Shan; W D Kruger; R Banerjee
Journal:  J Biol Chem       Date:  1998-09-25       Impact factor: 5.157

4.  The quantitative significance of the transsulfuration enzymes for H2S production in murine tissues.

Authors:  Omer Kabil; Victor Vitvitsky; Peter Xie; Ruma Banerjee
Journal:  Antioxid Redox Signal       Date:  2011-05-05       Impact factor: 8.401

5.  Formation of the alpha-aminoacrylate immediate limits the overall reaction catalyzed by O-acetylserine sulfhydrylase.

Authors:  E U Woehl; C H Tai; M F Dunn; P F Cook
Journal:  Biochemistry       Date:  1996-04-16       Impact factor: 3.162

Review 6.  Structure and mechanism of O-acetylserine sulfhydrylase.

Authors:  Wael M Rabeh; Paul F Cook
Journal:  J Biol Chem       Date:  2004-04-08       Impact factor: 5.157

7.  The possible role of hydrogen sulfide as an endogenous neuromodulator.

Authors:  K Abe; H Kimura
Journal:  J Neurosci       Date:  1996-02-01       Impact factor: 6.167

8.  Cytosolic mercaptopyruvate sulfurtransferase is evolutionarily related to mitochondrial rhodanese. Striking similarity in active site amino acid sequence and the increase in the mercaptopyruvate sulfurtransferase activity of rhodanese by site-directed mutagenesis.

Authors:  N Nagahara; T Okazaki; T Nishino
Journal:  J Biol Chem       Date:  1995-07-07       Impact factor: 5.157

9.  Kinetic isotope effects as a probe of the beta-elimination reaction catalyzed by O-acetylserine sulfhydrylase.

Authors:  C C Hwang; E U Woehl; D E Minter; M F Dunn; P F Cook
Journal:  Biochemistry       Date:  1996-05-21       Impact factor: 3.162

10.  Detection and identification of intermediates in the reaction of L-serine with Escherichia coli tryptophan synthase via rapid-scanning ultraviolet-visible spectroscopy.

Authors:  W F Drewe; M F Dunn
Journal:  Biochemistry       Date:  1985-07-16       Impact factor: 3.162

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  8 in total

Review 1.  Cystathionine-β-Synthase: Molecular Regulation and Pharmacological Inhibition.

Authors:  Karim Zuhra; Fiona Augsburger; Tomas Majtan; Csaba Szabo
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2.  S-3-Carboxypropyl-l-cysteine specifically inhibits cystathionine γ-lyase-dependent hydrogen sulfide synthesis.

Authors:  Pramod K Yadav; Victor Vitvitsky; Hanseong Kim; Andrew White; Uhn-Soo Cho; Ruma Banerjee
Journal:  J Biol Chem       Date:  2019-06-03       Impact factor: 5.157

3.  Crystallographic and mutational analyses of cystathionine β-synthase in the H2 S-synthetic gene cluster in Lactobacillus plantarum.

Authors:  Yasuyuki Matoba; Tomoki Yoshida; Hisae Izuhara-Kihara; Masafumi Noda; Masanori Sugiyama
Journal:  Protein Sci       Date:  2017-02-10       Impact factor: 6.725

Review 4.  Chemical Biology of H2S Signaling through Persulfidation.

Authors:  Milos R Filipovic; Jasmina Zivanovic; Beatriz Alvarez; Ruma Banerjee
Journal:  Chem Rev       Date:  2017-11-07       Impact factor: 60.622

5.  Purification, crystallization and preliminary crystallographic analysis of the catalytic core of cystathionine β-synthase from Saccharomyces cerevisiae.

Authors:  June Ereño-Orbea; Tomas Majtan; Iker Oyenarte; Jan P Kraus; Luis Alfonso Martínez-Cruz
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-02-19       Impact factor: 1.056

6.  Structure and kinetic analysis of H2S production by human mercaptopyruvate sulfurtransferase.

Authors:  Pramod Kumar Yadav; Kazuhiro Yamada; Taurai Chiku; Markos Koutmos; Ruma Banerjee
Journal:  J Biol Chem       Date:  2013-05-22       Impact factor: 5.157

7.  A proactive genotype-to-patient-phenotype map for cystathionine beta-synthase.

Authors:  Song Sun; Jochen Weile; Marta Verby; Yingzhou Wu; Yang Wang; Atina G Cote; Iosifina Fotiadou; Julia Kitaygorodsky; Marc Vidal; Jasper Rine; Pavel Ješina; Viktor Kožich; Frederick P Roth
Journal:  Genome Med       Date:  2020-01-30       Impact factor: 11.117

8.  Catalytic specificity of the Lactobacillus plantarum cystathionine γ-lyase presumed by the crystallographic analysis.

Authors:  Yasuyuki Matoba; Masafumi Noda; Tomoki Yoshida; Kosuke Oda; Yuka Ezumi; Chiaki Yasutake; Hisae Izuhara-Kihara; Narandarai Danshiitsoodol; Takanori Kumagai; Masanori Sugiyama
Journal:  Sci Rep       Date:  2020-09-10       Impact factor: 4.379

  8 in total

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