Literature DB >> 23123111

Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation.

Satoshi Watanabe1, Rie Matsumi, Haruyuki Atomi, Tadayuki Imanaka, Kunio Miki.   

Abstract

[NiFe] hydrogenase maturation represents one of the most dynamic and sophisticated processes in metallocenter assembly. The Fe(CN)(2)CO moiety of [NiFe] hydrogenases is assembled via unknown transient interactions among specific maturation proteins HypC (metallochaperone), HypD (redox protein), and HypE (cyanide synthesis/donor). Here, we report the structures of the HypC-HypD and HypC-HypD-HypE complexes, providing a view of the transient interactions that take place during the maturation process. HypC binds to the conserved region of HypD through extensive hydrophobic interactions. The ternary complex formation between HypE and the HypCD complex involves both HypC and HypD, rendering the HypE conformation favorable for cyanide transfer. In the complex, the conserved cysteines of HypC and HypD form an Fe binding site. The conserved C-terminal cysteine of HypE can access the thiol redox cascade of HypD. These results provide structural insights into the Fe atom cyanation in the HypCDE complex.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 23123111     DOI: 10.1016/j.str.2012.09.018

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  16 in total

1.  Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer.

Authors:  Satoshi Watanabe; Takumi Kawashima; Yuichi Nishitani; Tamotsu Kanai; Takehiko Wada; Kenji Inaba; Haruyuki Atomi; Tadayuki Imanaka; Kunio Miki
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-08       Impact factor: 11.205

2.  Proteolytic cleavage orchestrates cofactor insertion and protein assembly in [NiFe]-hydrogenase biosynthesis.

Authors:  Moritz Senger; Sven T Stripp; Basem Soboh
Journal:  J Biol Chem       Date:  2017-05-24       Impact factor: 5.157

3.  Crystal structures of the carbamoylated and cyanated forms of HypE for [NiFe] hydrogenase maturation.

Authors:  Taiga Tominaga; Satoshi Watanabe; Rie Matsumi; Haruyuki Atomi; Tadayuki Imanaka; Kunio Miki
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

4.  hypD as a marker for [NiFe]-hydrogenases in microbial communities of surface waters.

Authors:  Christian Beimgraben; Kirstin Gutekunst; Friederike Opitz; Jens Appel
Journal:  Appl Environ Microbiol       Date:  2014-04-11       Impact factor: 4.792

5.  Identification of an Isothiocyanate on the HypEF Complex Suggests a Route for Efficient Cyanyl-Group Channeling during [NiFe]-Hydrogenase Cofactor Generation.

Authors:  Sven T Stripp; Ute Lindenstrauss; R Gary Sawers; Basem Soboh
Journal:  PLoS One       Date:  2015-07-17       Impact factor: 3.240

6.  Overproduction of the membrane-bound [NiFe]-hydrogenase in Thermococcus kodakarensis and its effect on hydrogen production.

Authors:  Tamotsu Kanai; Jan-Robert Simons; Ryohei Tsukamoto; Akihito Nakajima; Yoshiyuki Omori; Ryoji Matsuoka; Haruki Beppu; Tadayuki Imanaka; Haruyuki Atomi
Journal:  Front Microbiol       Date:  2015-08-26       Impact factor: 5.640

7.  Distribution of Hydrogenases in Cyanobacteria: A Phylum-Wide Genomic Survey.

Authors:  Vincenzo Puggioni; Sébastien Tempel; Amel Latifi
Journal:  Front Genet       Date:  2016-12-27       Impact factor: 4.599

8.  Modeling the assembly order of multimeric heteroprotein complexes.

Authors:  Lenna X Peterson; Yoichiro Togawa; Juan Esquivel-Rodriguez; Genki Terashi; Charles Christoffer; Amitava Roy; Woong-Hee Shin; Daisuke Kihara
Journal:  PLoS Comput Biol       Date:  2018-01-12       Impact factor: 4.475

9.  Alternative σI/anti-σI factors represent a unique form of bacterial σ/anti-σ complex.

Authors:  Zhen Wei; Chao Chen; Ya-Jun Liu; Sheng Dong; Jie Li; Kuan Qi; Shiyue Liu; Xiaoke Ding; Lizett Ortiz de Ora; Iván Muñoz-Gutiérrez; Yifei Li; Hongwei Yao; Raphael Lamed; Edward A Bayer; Qiu Cui; Yingang Feng
Journal:  Nucleic Acids Res       Date:  2019-06-20       Impact factor: 16.971

10.  The influence of oxygen on [NiFe]-hydrogenase cofactor biosynthesis and how ligation of carbon monoxide precedes cyanation.

Authors:  Sven T Stripp; Ute Lindenstrauss; Claudia Granich; R Gary Sawers; Basem Soboh
Journal:  PLoS One       Date:  2014-09-11       Impact factor: 3.240

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