Literature DB >> 23118465

Complete genome of a novel endornavirus assembled from next-generation sequence data.

Yolandi Espach1, Hans J Maree, Johan T Burger.   

Abstract

Endornaviruses have large double-stranded RNA (dsRNA) genomes that carry a single open reading frame (ORF). Here we report the complete genome of a novel endornavirus, assembled from next-generation sequence data generated from Vitis vinifera-extracted dsRNA. Two different fungal hosts have been identified for this virus, suggesting that horizontal transmission of the virus is possible.

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Year:  2012        PMID： 23118465      PMCID： PMC3497628          DOI： 10.1128/JVI.02538-12

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  5 in total

1.  Mapping short DNA sequencing reads and calling variants using mapping quality scores.

Authors:  Heng Li; Jue Ruan; Richard Durbin
Journal:  Genome Res       Date:  2008-08-19       Impact factor: 9.043

2.  The wide distribution of endornaviruses, large double-stranded RNA replicons with plasmid-like properties.

Authors:  T Fukuhara; R Koga; N Aoki; C Yuki; N Yamamoto; N Oyama; T Udagawa; H Horiuchi; S Miyazaki; Y Higashi; M Takeshita; K Ikeda; M Arakawa; N Matsumoto; H Moriyama
Journal:  Arch Virol       Date:  2005-12-13       Impact factor: 2.574

3.  The remarkable evolutionary history of endornaviruses.

Authors:  Marilyn J Roossinck; Sead Sabanadzovic; Ryo Okada; Rodrigo A Valverde
Journal:  J Gen Virol       Date:  2011-07-20       Impact factor: 3.891

4.  Diversity, complexity and transmission of double-stranded RNA elements in Chalara elegans (synanam. Thielaviopsis basicola).

Authors:  Yunjung Park; Xiaobang Chen; Zamir K Punja
Journal:  Mycol Res       Date:  2006-06-09

5.  Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2008).

Authors:  E B Carstens; L A Ball
Journal:  Arch Virol       Date:  2009-06-03       Impact factor: 2.574
  5 in total
  4 in total

1.  Complete nucleotide sequence and genome organization of an endornavirus from bottle gourd (Lagenaria siceraria) in California, U.S.A.

Authors:  Sun-Jung Kwon; Shih-Hua Tan; Georgios Vidalakis
Journal:  Virus Genes       Date:  2014-05-13       Impact factor: 2.332

2.  The complete genome of a putative endornavirus identified in yerba mate (Ilex paraguariensis St. Hil.).

Authors:  Humberto J Debat; Mauro Grabiele; Patricia M Aguilera; Rosana Bubillo; Pedro D Zapata; Dardo A Marti; Daniel A Ducasse
Journal:  Virus Genes       Date:  2014-06-26       Impact factor: 2.332

3.  Citrus Tristeza Virus Genotype Detection Using High-Throughput Sequencing.

Authors:  Rachelle Bester; Glynnis Cook; Hans J Maree
Journal:  Viruses       Date:  2021-01-23       Impact factor: 5.048

4.  Towards the validation of high-throughput sequencing (HTS) for routine plant virus diagnostics: measurement of variation linked to HTS detection of citrus viruses and viroids.

Authors:  Rachelle Bester; Glynnis Cook; Johannes H J Breytenbach; Chanel Steyn; Rochelle De Bruyn; Hans J Maree
Journal:  Virol J       Date:  2021-03-22       Impact factor: 4.099
  4 in total

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