Literature DB >> 23115259

Global phylogeny of Shigella sonnei strains from limited single nucleotide polymorphisms (SNPs) and development of a rapid and cost-effective SNP-typing scheme for strain identification by high-resolution melting analysis.

Vartul Sangal1, Kathryn E Holt, Jianfeng Yuan, Derek J Brown, Ingrid Filliol-Toutain, François-Xavier Weill, Dong-Wook Kim, Wanderley Dias da Silveira, Derek Pickard, Nicholas R Thomson, Julian Parkhill, Jun Yu.   

Abstract

The current Shigella sonnei pandemic involves geographically associated, multidrug-resistant clones. This study has demonstrated that S. sonnei phylogeny can be accurately defined with limited single nucleotide polymorphisms (SNPs). By typing 6 informative SNPs using a high-resolution melting (HRM) assay, major S. sonnei lineages/sublineages can be identified as defined by whole-genome variation.

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Mesh：

Year:  2012        PMID： 23115259      PMCID： PMC3536230          DOI： 10.1128/JCM.02238-12

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  13 in total

1.  Development of a multiple-run high-resolution melting assay for Salmonella spp. genotyping HRM application for Salmonella spp. subtyping.

Authors:  Maksim Bratchikov; Mykolas Mauricas
Journal:  Diagn Microbiol Infect Dis       Date:  2011-11       Impact factor: 2.803

2.  Single nucleotide polymorphism (SNP)-based differentiation of Shigella isolates by pyrosequencing.

Authors:  Alice E Hayford; Mark K Mammel; David W Lacher; Eric W Brown
Journal:  Infect Genet Evol       Date:  2011-08-04       Impact factor: 3.342

3.  Molecular characterization of antimicrobial resistance in Shigella sonnei isolates in Korea.

Authors:  Sung Yong Seol; Yong Tae Kim; Young Sook Jeong; Jae Young Oh; Hee Young Kang; Dong Chan Moon; Jungmin Kim; Yoo Chul Lee; Dong Taek Cho; Je Chul Lee
Journal:  J Med Microbiol       Date:  2006-07       Impact factor: 2.472

4.  Epidemiology and evolution of genotype and antimicrobial resistance of an imported Shigella sonnei clone circulating in central Taiwan.

Authors:  Hsiao-Lun Wei; You-Wen Wang; Chun-Chin Li; Sheng Kai Tung; Chien-Shun Chiou
Journal:  Diagn Microbiol Infect Dis       Date:  2007-05-16       Impact factor: 2.803

5.  The utility of high-resolution melting analysis of SNP nucleated PCR amplicons--an MLST based Staphylococcus aureus typing scheme.

Authors:  Rachael A Lilliebridge; Steven Y C Tong; Philip M Giffard; Deborah C Holt
Journal:  PLoS One       Date:  2011-06-22       Impact factor: 3.240

6.  Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery.

Authors:  Fan Yang; Jian Yang; Xiaobing Zhang; Lihong Chen; Yan Jiang; Yongliang Yan; Xudong Tang; Jing Wang; Zhaohui Xiong; Jie Dong; Ying Xue; Yafang Zhu; Xingye Xu; Lilian Sun; Shuxia Chen; Huan Nie; Junping Peng; Jianguo Xu; Yu Wang; Zhenghong Yuan; Yumei Wen; Zhijian Yao; Yan Shen; Boqin Qiang; Yunde Hou; Jun Yu; Qi Jin
Journal:  Nucleic Acids Res       Date:  2005-11-07       Impact factor: 16.971

7.  Sex and virulence in Escherichia coli: an evolutionary perspective.

Authors:  Thierry Wirth; Daniel Falush; Ruiting Lan; Frances Colles; Patience Mensa; Lothar H Wieler; Helge Karch; Peter R Reeves; Martin C J Maiden; Howard Ochman; Mark Achtman
Journal:  Mol Microbiol       Date:  2006-06       Impact factor: 3.501

8.  A multicentre study of Shigella diarrhoea in six Asian countries: disease burden, clinical manifestations, and microbiology.

Authors:  Lorenz von Seidlein; Deok Ryun Kim; Mohammad Ali; Hyejon Lee; Xuanyi Wang; Vu Dinh Thiem; Do Gia Canh; Wanpen Chaicumpa; Magdarina D Agtini; Anowar Hossain; Zulfiqar A Bhutta; Carl Mason; Ornthipa Sethabutr; Kaisar Talukder; G B Nair; Jacqueline L Deen; Karen Kotloff; John Clemens
Journal:  PLoS Med       Date:  2006-09       Impact factor: 11.069

9.  Increased isolation and characterization of Shigella sonnei obtained from hospitalized children in Tehran, Iran.

Authors:  Reza Ranjbar; Mohammad M Soltan Dallal; Malihe Talebi; Mohammad R Pourshafie
Journal:  J Health Popul Nutr       Date:  2008-12       Impact factor: 2.000

10.  Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe.

Authors:  Kathryn E Holt; Stephen Baker; François-Xavier Weill; Edward C Holmes; Andrew Kitchen; Jun Yu; Vartul Sangal; Derek J Brown; John E Coia; Dong Wook Kim; Seon Young Choi; Su Hee Kim; Wanderley D da Silveira; Derek J Pickard; Jeremy J Farrar; Julian Parkhill; Gordon Dougan; Nicholas R Thomson
Journal:  Nat Genet       Date:  2012-08-05       Impact factor: 38.330
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  7 in total

1.  Genome diversity of Shigella boydii.

Authors:  Dane A Kania; Tracy H Hazen; Anowar Hossain; James P Nataro; David A Rasko
Journal:  Pathog Dis       Date:  2016-04-06       Impact factor: 3.166

Review 2.  Salmonella, Shigella, and yersinia.

Authors:  John P Dekker; Karen M Frank
Journal:  Clin Lab Med       Date:  2015-04-02       Impact factor: 1.935

3.  Rapid Genotyping of Shigella sonnei by Use of Multiplex High-Resolution Melting.

Authors:  Waleed Mazi; Vartul Sangal; Amir Saeed; Gunnar Sandstrom; François-Xavier Weill; Jun Yu
Journal:  J Clin Microbiol       Date:  2015-04-29       Impact factor: 5.948

4.  Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever.

Authors:  Zhemin Zhou; Angela McCann; François-Xavier Weill; Camille Blin; Satheesh Nair; John Wain; Gordon Dougan; Mark Achtman
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-04       Impact factor: 11.205

5.  Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe.

Authors:  David M Aanensen; Edward J Feil; Matthew T G Holden; Janina Dordel; Corin A Yeats; Artemij Fedosejev; Richard Goater; Santiago Castillo-Ramírez; Jukka Corander; Caroline Colijn; Monika A Chlebowicz; Leo Schouls; Max Heck; Gerlinde Pluister; Raymond Ruimy; Gunnar Kahlmeter; Jenny Åhman; Erika Matuschek; Alexander W Friedrich; Julian Parkhill; Stephen D Bentley; Brian G Spratt; Hajo Grundmann
Journal:  mBio       Date:  2016-05-05       Impact factor: 7.867

6.  Comparative Genomic and Phylogenetic Analysis of a Shiga Toxin Producing Shigella sonnei (STSS) Strain.

Authors:  Domonkos Sváb; Balázs Bálint; Bálint Vásárhelyi; Gergely Maróti; István Tóth
Journal:  Front Cell Infect Microbiol       Date:  2017-05-30       Impact factor: 5.293

7.  Use of whole genome sequencing in surveillance for antimicrobial-resistant Shigella sonnei infections acquired from domestic and international sources.

Authors:  Rebecca L Abelman; Nkuchia M M'ikanatha; Hillary M Figler; Edward G Dudley
Journal:  Microb Genom       Date:  2019-05-17
  7 in total

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