Literature DB >> 2310953

SIMFIT: a microcomputer software-toolkit for modelistic studies in biochemistry.

H G Holzhütter1, A Colosimo.   

Abstract

A software package suitable for personal computers and designed to handle simulation and fitting problems related to the study of biomolecules under pre-steady and steady state conditions is presented, and its overall architecture as well as the implemented algorithms illustrated. The peculiar features of the package are: (i) integrated capability of simulating dynamic models and fitting to them experimental data; (ii) handling of stiff problems; (iii) free use of algebraic as well as differential equations; (iv) objective comparison of models of different complexity. The above features are discussed through a number of examples taken from the direct experience of the authors in enzyme kinetics and ligand binding.

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Year:  1990        PMID: 2310953     DOI: 10.1093/bioinformatics/6.1.23

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN: 0266-7061


  9 in total

1.  An integrated study of threonine-pathway enzyme kinetics in Escherichia coli.

Authors:  C Chassagnole; B Raïs; E Quentin; D A Fell; J P Mazat
Journal:  Biochem J       Date:  2001-06-01       Impact factor: 3.857

2.  A kinetic model of vertebrate 20S proteasome accounting for the generation of major proteolytic fragments from oligomeric peptide substrates.

Authors:  H G Holzhütter; P M Kloetzel
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

3.  Metabolic control analysis and mitochondrial pathologies.

Authors:  T Letellier; M Malgat; R Rossignol; J P Mazat
Journal:  Mol Cell Biochem       Date:  1998-07       Impact factor: 3.396

4.  Metabolic control analysis and threshold effect in oxidative phosphorylation: implications for mitochondrial pathologies.

Authors:  J P Mazat; T Letellier; F Bédes; M Malgat; B Korzeniewski; L S Jouaville; R Morkuniene
Journal:  Mol Cell Biochem       Date:  1997-09       Impact factor: 3.396

5.  The kinetic basis of threshold effects observed in mitochondrial diseases: a systemic approach.

Authors:  T Letellier; R Heinrich; M Malgat; J P Mazat
Journal:  Biochem J       Date:  1994-08-15       Impact factor: 3.857

6.  Direct n.m.r. evidence for substrate-induced conformational changes in a beta-lactamase.

Authors:  M Jamin; C Damblon; A M Bauduin-Misselyn; F Durant; G C Roberts; P Charlier; G Llabres; J M Frère
Journal:  Biochem J       Date:  1994-07-01       Impact factor: 3.857

7.  The mechanism of action of DD-peptidases: the role of Threonine-299 and -301 in the Streptomyces R61 DD-peptidase.

Authors:  J M Wilkin; A Dubus; B Joris; J M Frère
Journal:  Biochem J       Date:  1994-07-15       Impact factor: 3.857

8.  Breakdown of the stereospecificity of DD-peptidases and beta-lactamases with thiolester substrates.

Authors:  C Damblon; G H Zhao; M Jamin; P Ledent; A Dubus; M Vanhove; X Raquet; L Christiaens; J M Frère
Journal:  Biochem J       Date:  1995-07-15       Impact factor: 3.857

9.  The suppression of 5-lipoxygenation of arachidonic acid in human polymorphonuclear leucocytes by the 15-lipoxygenase product (15S)-hydroxy-(5Z,8Z,11Z,13E)-eicosatetraenoic acid: structure-activity relationship and mechanism of action.

Authors:  K Petrich; P Ludwig; H Kühn; T Schewe
Journal:  Biochem J       Date:  1996-03-15       Impact factor: 3.857

  9 in total

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