Literature DB >> 23108465

Eleven diverse nuclear-encoded phylogenetic markers for the subfamily Panicoideae (Poaceae).

Matt C Estep1, Dilys M Vela Diaz, Jinshun Zhong, Elizabeth A Kellogg.   

Abstract

PREMISE OF THE STUDY: Polyploidy is common in the grasses and low-copy nuclear loci are needed to further our understanding of phylogenetic relationships. METHODS AND
RESULTS: Genetic and genomic resources were combined to identify loci known to influence plant and inflorescence architecture. Degenerate primers were designed and tested to amplify regions of 11 nuclear-encoded loci across the panicoid grasses.
CONCLUSIONS: The primers designed in this study amplify regions of a diverse set of genes within the panicoid grasses. Properly employed, these markers will allow the identification of allopolyploid taxa and their diploid progenitors.

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Year:  2012        PMID: 23108465     DOI: 10.3732/ajb.1200186

Source DB:  PubMed          Journal:  Am J Bot        ISSN: 0002-9122            Impact factor:   3.844


  4 in total

1.  Phylogenetic reconstruction using four low-copy nuclear loci strongly supports a polyphyletic origin of the genus Sorghum.

Authors:  Jennifer S Hawkins; Dhanushya Ramachandran; Ashley Henderson; Jasmine Freeman; Michael Carlise; Alex Harris; Zachary Willison-Headley
Journal:  Ann Bot       Date:  2015-07-02       Impact factor: 4.357

2.  Allopolyploidy, diversification, and the Miocene grassland expansion.

Authors:  Matt C Estep; Michael R McKain; Dilys Vela Diaz; Jinshun Zhong; John G Hodge; Trevor R Hodkinson; Daniel J Layton; Simon T Malcomber; Rémy Pasquet; Elizabeth A Kellogg
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-06       Impact factor: 11.205

3.  Complete Chloroplast Genomes of Erianthus arundinaceus and Miscanthus sinensis: Comparative Genomics and Evolution of the Saccharum Complex.

Authors:  Shin-Ichi Tsuruta; Masumi Ebina; Makoto Kobayashi; Wataru Takahashi
Journal:  PLoS One       Date:  2017-01-26       Impact factor: 3.240

4.  Continued Adaptation of C4 Photosynthesis After an Initial Burst of Changes in the Andropogoneae Grasses.

Authors:  Matheus E Bianconi; Jan Hackel; Maria S Vorontsova; Adriana Alberti; Watchara Arthan; Sean V Burke; Melvin R Duvall; Elizabeth A Kellogg; Sébastien Lavergne; Michael R McKain; Alexandre Meunier; Colin P Osborne; Paweena Traiperm; Pascal-Antoine Christin; Guillaume Besnard
Journal:  Syst Biol       Date:  2020-05-01       Impact factor: 15.683

  4 in total

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