| Literature DB >> 23107167 |
Pietra Graebin, Tiago D Veit, Clarice S Alho, Fernando S Dias, José A B Chies.
Abstract
INTRODUCTION: Critically ill patients are characterized as individuals hospitalized in the Intensive Care Unit (ICU) and can evolve to sepsis, septic shock or even death. Among others, genetic factors can influence the outcome of critically ill patients. HLA-G is a non-classical class Ib molecule that has limited protein variability, presenting seven isoforms generated by alternative splicing, and presents immunomodulatory properties. Polymorphisms at the 3'UTR are thought to influence HLA-G gene expression. It was previously observed that increased sHLA-G5 levels were predictive of survival among septic shock patients. We assessed the frequencies of 7 polymorphisms in exon 8 at the 3' UTR of HLA-G and associated these variants with different clinical outcomes in critically ill patients.Entities:
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Year: 2012 PMID: 23107167 PMCID: PMC3682315 DOI: 10.1186/cc11845
Source DB: PubMed Journal: Crit Care ISSN: 1364-8535 Impact factor: 9.097
Clinical and demographic data of critically ill patients
| Variables | Values in critically ill patients (n = 683) |
|---|---|
| Age, years | 57 (13/97) |
| Male, n (%) | 338 (53.0) |
| APACHE II score, mean (SD) | 19.32 (7.73) |
| SOFA scores, median (min/max) | |
| SOFA-1 | 6 (0/18) |
| SOFA-2 | 6 (0/17) |
| SOFA-3 | 6 (0/18) |
| SOFA-4 | 6 (0/22) |
| SOFA-5 | 5 (0/20) |
| SOFA-6 | 5 (0/21) |
| SOFA-7 | 5 (0/24) |
| SOFA-15 | 5 (0/19) |
| SOFA-29 | 5 (0/16) |
| Length of stay, days, median (min/max) | |
| ICU | 13 (0/173) |
| ICU + hospital | 35 (1/242) |
| With sepsis, n (%) | 469 (73.5) |
| With septic shock, n (%) | 329 (51.6) |
| ICU mortality, n (%) | 210 (32.9) |
| ICU + hospital mortality, n (%) | 290 (45.7) |
APACHE-II: Acute Physiology and Chronic Health Evaluation II; SOFA: Sequential Organ Failure Assessment; n: number of patients.
HLA-G 3'UTR allelic and genotypic frequencies among critically ill patients
| +2960 INDEL | +3003C>T | +3010C>G | +3027A>C | +3035C>T | +3142C>G | +3187A>C | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| DEL | 0.578 | C | 0.109 | C | 0.521 | A | 0.034 | C | 0.861 | C | 0.463 | A | 0.699 | |
| IN | 0.421 | T | 0.890 | G | 0.478 | C | 0.965 | T | 0.141 | G | 0.536 | C | 0.304 | |
| DEL/DEL | 0.310 | C/C | 0.013 | C/C | 0.251 | A/A | 0.001 | C/C | 0.734 | C/C | 0.180 | A/A | 0.448 | |
| DEL/IN | 0.536 | C/T | 0.194 | C/G | 0.541 | A/C | 0.066 | C/T | 0.255 | C/G | 0.566 | A/C | 0.503 | |
| IN/IN | 0.154 | T/T | 0.793 | G/G | 0.208 | C/C | 0.933 | T/T | 0.011 | G/G | 0.254 | C/C | 0.049 | |
| >0.05 | <0.05 | >0.05 | <0.05 | <0.05 | >0.05 | >0.05 | ||||||||
HWE: Hardy-Weinberg equilibrium.
Heterozygosity test
| Polymorphism | Observed | Expected |
|---|---|---|
| +2960INDEL* | 0.53605 | 0.4881 |
| +3003C>T | 0.19436 | 0.19551 |
| +3010C>G* | 0.54075 | 0.4995 |
| +3027A>C | 0.06583 | 0.06664 |
| +3035C>T | 0.25549 | 0.23913 |
| +3142C>G* | 0.56583 | 0.49768 |
| +3187A>G* | 0.5047 | 0.42108 |
| Mean | 0.38043 | 0.34395 |
| SD | 0.20369 | 0.17535 |
*Polymorphisms with observed heterozygosity values greater than expected.
Carriers and noncarriers of the +2960IN_+3142G_+3187A haplotype and clinical features among 683 critically ill patients
| Variables | Number (%) of carriers of +2960IN_+3142G_+3187A | Number (%) of noncarriers of +2960IN_+3142G_+3187A | |
|---|---|---|---|
| Frequency | 436 (68.3) | 202 (31.7) | - |
| With sepsis | 323 (74.1) | 146 (72.3) | 0.701 |
| With septic shock | 237 (54.4) | 92 (45.5) | 0.047* |
| ICU mortality | 149 (34.2) | 61 (30.2) | 0.366 |
| ICU + hospital mortality | 201 (46.1) | 89 (44.1) | 0.692 |
P-value, Pearson chi-Square test with the Yates correction; *comparison between carriers and noncarriers of the haplotype +2960IN_+3142G_+3187A.
Presence/absence of the +2960IN_+3142G_+3187A (IN-G-A) haplotype in relation to progression to septic shock (SS) and mortality after SS among patients with sepsis
| With IN-G-An (%) | Without IN-G-An (%) | Odds ratio(95% CI) | ||
|---|---|---|---|---|
| With sepsis | 323 (68.9) | 146 (31.1) | - | |
| Progression to SS | 237 (73.4) | 92 (63.0) | 1.62 (1.04-2.50) | 0.031* |
| Without SS | 86 (26.6) | 54 (37.0) | ||
| ICU mortality (among SS patients) | 122/237 (51.5) | 48/92 (52.2) | 0.97 (0.58-1.62) | 0.990 |
| ICU + hospital mortality (among SS patients) | 149/237 (62.9) | 61/92 (66.3) | 0.86 (0.50-1.47) | 0.649 |
P-value, Pearson chi-Square test with the Yates correction; *chi-square test significant (P < 0.05).
Presence/absence of each allele of a given polymorphism and sepsis in all critically ill patients
| Polymorphism | Outcome | With IN, n (%) | Without IN, n (%) | |
|---|---|---|---|---|
| + 2960INDEL | Total of ICU patients | 440 (69.0) | 198 (31.0) | |
| With sepsis | 326 (74.1) | 143 (72.2) | 0.691 | |
| Without sepsis | 114 (25.9) | 55 (27.7) | ||
| +3003C>T | Total of ICU patients | 132 (20.7) | 506 (79.3) | |
| With sepsis | 98 (74.2) | 371 (73.3) | 0.831 | |
| Without sepsis | 34 (25.8) | 135 (26.7) | ||
| +3010C>G | Total of ICU patients | 505 (79.2) | 133 (20.8) | |
| With sepsis | 373 (73.9) | 96 (72.2) | 0.699 | |
| Without sepsis | 132 (26.1) | 37 (27.8) | ||
| +3027A>C | Total of ICU patients | 43 (6.7) | 595 (93.3) | |
| With sepsis | 36 (83.7) | 433 (72.8) | 0.116 | |
| Without sepsis | 7 (16.3) | 162 (27.2) | ||
| +3035C>T | Total of ICU patients | 170 (26.6) | 468 (73.4) | |
| With sepsis | 125 (73.5) | 344 (73.5) | 0.995 | |
| Without sepsis | 45 (26.5) | 124 (26.5) | ||
| +3142C>G | Total of ICU patients | 523 (82.0) | 115 (18.0) | |
| With sepsis | 391 (75.0) | 78 (67.8) | 0.159 | |
| Without sepsis | 132 (25.0) | 37 (32.2) | ||
| +3187A>G | Total of ICU patients | 607 (95.1) | 31 (4.9) | |
| With sepsis | 447 (73.6) | 22 (71.0) | 0.742 | |
| Without sepsis | 160 (26.4) | 9 (29.0) | ||
P-value, chi square test; *low values of P.
Progression to septic shock (SS) and mortality after septic shock among patients with sepsis
| Polymorphism | Outcome | With IN, n (%) | Without IN, n (%) |
| |
|---|---|---|---|---|---|
| +2960INDEL | With sepsis | 363 (74.4) | 153 (72.9) | - | - |
| Progression to SS | 266/363 (73.3) | 98/153 (64.1) | 0.046 | 0.414 | |
| ICU mortality | 135/266 (50.8) | 51/98 (52.0) | 0.920 | - | |
| ICU + hospital mortality | 162/266 (60.9) | 65/98 (66.3) | 0.409 | - | |
| +3003C>T | With sepsis | 98 (20.9) | 371 (79.1) | - | |
| Progression to SS | 71/98 (72.4) | 258/371 (69.5) | 0.663 | - | |
| ICU mortality | 44/71 (62.0) | 126/258 (48.8) | 0.068 | - | |
| ICU + hospital mortality | 50/71 (70.4) | 160/258 (62.3) | 0.244 | - | |
| +3010C>G | With sepsis | 373 (79.5) | 96 (20.5) | - | - |
| Progression to SS | 267/373 (71.6) | 62/96 (64.6) | 0.226 | - | |
| ICU mortality | 135/267 (50.6) | 35/62 (56.5) | 0.487 | - | |
| ICU + hospital mortality | 166/267 (62.2) | 44/62 (71.0) | 0.249 | - | |
| +3027 A>C | With sepsis | 36 (7.7) | 433 (92.3) | - | - |
| Progression to SS | 25/36 (69.4) | 304/433 (70.0) | 1.000 | - | |
| ICU mortality | 15/25 (60.0) | 155/304 (51.0) | 0.510 | - | |
| ICU + hospital mortality | 17/25 (68.0) | 193/304 (63.5) | 0.814 | - | |
| +3035C>T | With sepsis | 125 (26.7) | 344 (73.3) | - | - |
| Progression to SS | 96/125 (76.8) | 233/344 (67.7) | 0.075 | - | |
| ICU mortality | 51/96 (53.1) | 119/233 (51.1) | 0.828 | - | |
| ICU + hospital mortality | 63/96 (65.6) | 147/233 (63.1) | 0.757 | - | |
| +3142C>G | With sepsis | 431 (83.5) | 85 (16.5) | - | - |
| Progression to SS | 309/431 (71.7) | 55/85 (64.7) | 0.245 | - | |
| ICU mortality | 157/309 (50.8) | 29/55 (52.7) | 0.908 | - | |
| ICU + hospital mortality | 188/309 (60.8) | 39/55 (70.9) | 0.204 | - | |
| +3187A>G | With sepsis | 447 (95.3) | 22 (4.7) | - | - |
| Progression to SS | 316/447 (70.7) | 13/22 (59.1) | 0.356 | - | |
| ICU mortality | 162/316 (51.3) | 8/13 (61.5) | 0.658 | - | |
| ICU + hospital mortality | 200/316 (63.3) | 10/13 (76.9) | 0.479 | - | |
P-value, chi square test; Pcorr, P-value after Bonferroni correction (n = 9).