Literature DB >> 23105821

Expressed sequence tags of Aspergillus fumigatus: Extension of catalogue and their evaluation as putative drug targets and/or diagnostic markers.

Santosh Kumar Upadhyay1, Jata Shankar, Yogendra Singh, Seemi Farhat Basir, Taruna Madan, P Usha Sarma.   

Abstract

Aspergillus fumigatus a fungal pathogen is implicated in a spectrum of allergic and invasive disorders in humans. Validation of transcriptome of pathogen is essential for understanding its virulence mechanism and to identify new therapeutic targets/diagnostic markers. In order to rapidly identify genes of Aspergillus fumigatus we adopted sequencing of cDNA clones. Our earlier effort has lead to identification of 68 expressed sequence tags of Aspergillus fumigatus. Present study describes 52 more expressed sequence tags generated by sequencing 200 phage clones of a non-normalized cDNA library. One of the cDNA clones comprised of the complete coding region for tetratricopeptide repeat domain protein gene. Various homology search algorithms were employed to assign functions to expressed sequence tags coding for hypothetical proteins, and relevance of these expressed sequence tags or their protein products as drug targets/diagnostic markers was examined by searching for homologues in fungi and human.

Entities:  

Keywords:  Aspergillus fumigatus; Diagnosis; Drug target; Expressed sequence tags; Tetratricopeptide repeat domain

Year:  2009        PMID: 23105821      PMCID: PMC3453226          DOI: 10.1007/s12291-009-0024-z

Source DB:  PubMed          Journal:  Indian J Clin Biochem        ISSN: 0970-1915


  17 in total

Review 1.  TPR proteins: the versatile helix.

Authors:  Luca D D'Andrea; Lynne Regan
Journal:  Trends Biochem Sci       Date:  2003-12       Impact factor: 13.807

2.  Expressed sequence tags: alternative or complement to whole genome sequences?

Authors:  Stephen Rudd
Journal:  Trends Plant Sci       Date:  2003-07       Impact factor: 18.313

3.  Identification and assignment of function to the genes of Aspergillus fumigatus expressed at 37 degrees C.

Authors:  Jata Shankar; Shailly Nigam; Shweta Saxena; Taruna Madan; P Usha Sarma
Journal:  J Eukaryot Microbiol       Date:  2004 Jul-Aug       Impact factor: 3.346

4.  Multifunctional antigens of A. fumigatus and specific antibodies.

Authors:  S Purkayastha; T Madan; A Shah; H G Krishnamurthy; P U Sarma
Journal:  Appl Biochem Biotechnol       Date:  2000 Jan-Mar       Impact factor: 2.926

5.  Identification of vacuolar serine proteinase as a major allergen of Aspergillus fumigatus by immunoblotting and N-terminal amino acid sequence analysis.

Authors:  H D Shen; W L Lin; M F Tam; H Chou; C W Wang; J J Tsai; S R Wang; S H Han
Journal:  Clin Exp Allergy       Date:  2001-02       Impact factor: 5.018

Review 6.  Genomics of Aspergillus fumigatus.

Authors:  Catherine M Ronning; Natalie D Fedorova; Paul Bowyer; Richard Coulson; Gustavo Goldman; H Stanley Kim; Geoffrey Turner; Jennifer R Wortman; Jiujiang Yu; Michael J Anderson; David W Denning; William C Nierman
Journal:  Rev Iberoam Micol       Date:  2005-12       Impact factor: 1.044

7.  Cryptococcus neoformans with a mutation in the tetratricopeptide repeat-containing gene, CCN1, causes subcutaneous lesions but fails to cause systemic infection.

Authors:  Seyung Chung; Philippe Mondon; Yun C Chang; Kyung J Kwon-Chung
Journal:  Infect Immun       Date:  2003-04       Impact factor: 3.441

8.  bimA encodes a member of the tetratricopeptide repeat family of proteins and is required for the completion of mitosis in Aspergillus nidulans.

Authors:  K L O'Donnell; A H Osmani; S A Osmani; N R Morris
Journal:  J Cell Sci       Date:  1991-08       Impact factor: 5.285

9.  Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus.

Authors:  William C Nierman; Arnab Pain; Michael J Anderson; Jennifer R Wortman; H Stanley Kim; Javier Arroyo; Matthew Berriman; Keietsu Abe; David B Archer; Clara Bermejo; Joan Bennett; Paul Bowyer; Dan Chen; Matthew Collins; Richard Coulsen; Robert Davies; Paul S Dyer; Mark Farman; Nadia Fedorova; Natalie Fedorova; Tamara V Feldblyum; Reinhard Fischer; Nigel Fosker; Audrey Fraser; Jose L García; Maria J García; Arlette Goble; Gustavo H Goldman; Katsuya Gomi; Sam Griffith-Jones; Ryan Gwilliam; Brian Haas; Hubertus Haas; David Harris; H Horiuchi; Jiaqi Huang; Sean Humphray; Javier Jiménez; Nancy Keller; Hoda Khouri; Katsuhiko Kitamoto; Tetsuo Kobayashi; Sven Konzack; Resham Kulkarni; Toshitaka Kumagai; Anne Lafon; Anne Lafton; Jean-Paul Latgé; Weixi Li; Angela Lord; Charles Lu; William H Majoros; Gregory S May; Bruce L Miller; Yasmin Mohamoud; Maria Molina; Michel Monod; Isabelle Mouyna; Stephanie Mulligan; Lee Murphy; Susan O'Neil; Ian Paulsen; Miguel A Peñalva; Mihaela Pertea; Claire Price; Bethan L Pritchard; Michael A Quail; Ester Rabbinowitsch; Neil Rawlins; Marie-Adele Rajandream; Utz Reichard; Hubert Renauld; Geoffrey D Robson; Santiago Rodriguez de Córdoba; Jose M Rodríguez-Peña; Catherine M Ronning; Simon Rutter; Steven L Salzberg; Miguel Sanchez; Juan C Sánchez-Ferrero; David Saunders; Kathy Seeger; Rob Squares; Steven Squares; Michio Takeuchi; Fredj Tekaia; Geoffrey Turner; Carlos R Vazquez de Aldana; Janice Weidman; Owen White; John Woodward; Jae-Hyuk Yu; Claire Fraser; James E Galagan; Kiyoshi Asai; Masayuki Machida; Neil Hall; Bart Barrell; David W Denning
Journal:  Nature       Date:  2005-12-22       Impact factor: 49.962

10.  Full-length messenger RNA sequences greatly improve genome annotation.

Authors:  Brian J Haas; Natalia Volfovsky; Christopher D Town; Maxim Troukhan; Nickolai Alexandrov; Kenneth A Feldmann; Richard B Flavell; Owen White; Steven L Salzberg
Journal:  Genome Biol       Date:  2002-05-30       Impact factor: 13.583

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  2 in total

1.  Allergens/Antigens, toxins and polyketides of important Aspergillus species.

Authors:  Preetida J Bhetariya; Taruna Madan; Seemi Farhat Basir; Anupam Varma; Sarma P Usha
Journal:  Indian J Clin Biochem       Date:  2011-05-19

Review 2.  Role of Heat-Shock Proteins in Cellular Function and in the Biology of Fungi.

Authors:  Shraddha Tiwari; Raman Thakur; Jata Shankar
Journal:  Biotechnol Res Int       Date:  2015-12-31
  2 in total

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