Literature DB >> 23105079

Draft genome sequence of Alicyclobacillus hesperidum strain URH17-3-68.

Ping Wang1, Li Li, Xiaoyun Chen, Nan Jiang, Guiyou Liu, Lawrence Chen, Jianyong Xu, Hui Song, Zugen Chen, Yanhe Ma.   

Abstract

Alicyclobacillus hesperidum is a thermoacidophilic bacterium. We isolated strain URH17-3-68 from hot spring sludge in Tengchong, Yunnan province, China. Its extracellular products include heat- and acid-stable enzymes which are important for industrial applications. Here we report the draft genome of this strain.

Entities:  

Mesh：

Year:  2012        PMID： 23105079      PMCID： PMC3486414          DOI： 10.1128/JB.01612-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  8 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

3.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Alicyclobacillus hesperidum sp. nov. and a related genomic species from solfataric soils of São Miguel in the Azores.

Authors:  L Albuquerque; F A Rainey; A P Chung; A Sunna; M F Nobre; R Grote; G Antranikian; M S da Costa
Journal:  Int J Syst Evol Microbiol       Date:  2000-03       Impact factor: 2.747

6.  Microbial gene identification using interpolated Markov models.

Authors:  S L Salzberg; A L Delcher; S Kasif; O White
Journal:  Nucleic Acids Res       Date:  1998-01-15       Impact factor: 16.971

7.  The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.

Authors:  Peter Schattner; Angela N Brooks; Todd M Lowe
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

8.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  8 in total
  1 in total

1.  Heterologous expression and characterization of a malathion-hydrolyzing carboxylesterase from a thermophilic bacterium, Alicyclobacillus tengchongensis.

Authors:  Zhenrong Xie; Bo Xu; Junmei Ding; Lingyun Liu; Xuelin Zhang; Junjun Li; Zunxi Huang
Journal:  Biotechnol Lett       Date:  2013-06-26       Impact factor: 2.461
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.