Literature DB >> 23105067

Draft genome sequence of the Sulfobacillus thermosulfidooxidans Cutipay strain, an indigenous bacterium isolated from a naturally extreme mining environment in Northern Chile.

Dante Travisany1, Alex Di Genova, Andrea Sepúlveda, Roberto A Bobadilla-Fazzini, Pilar Parada, Alejandro Maass.   

Abstract

Sulfobacillus thermosulfidooxidans strain Cutipay is a mixotrophic, acidophilic, moderately thermophilic bacterium isolated from mining environments of the north of Chile, making it an interesting subject for studying the bioleaching of copper. We introduce the draft genome sequence and annotation of this strain, which provide insights into its mechanisms for heavy metal resistance.

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Year:  2012        PMID: 23105067      PMCID: PMC3486405          DOI: 10.1128/JB.01622-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  8 in total

1.  Genome wide identification of Acidithiobacillus ferrooxidans (ATCC 23270) transcription factors and comparative analysis of ArsR and MerR metal regulators.

Authors:  Christian Hödar; Pablo Moreno; Alex di Genova; Mauricio Latorre; Angélica Reyes-Jara; Alejandro Maass; Mauricio González; Verónica Cambiazo
Journal:  Biometals       Date:  2011-08-10       Impact factor: 2.949

2.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

3.  An integrated semiconductor device enabling non-optical genome sequencing.

Authors:  Jonathan M Rothberg; Wolfgang Hinz; Todd M Rearick; Jonathan Schultz; William Mileski; Mel Davey; John H Leamon; Kim Johnson; Mark J Milgrew; Matthew Edwards; Jeremy Hoon; Jan F Simons; David Marran; Jason W Myers; John F Davidson; Annika Branting; John R Nobile; Bernard P Puc; David Light; Travis A Clark; Martin Huber; Jeffrey T Branciforte; Isaac B Stoner; Simon E Cawley; Michael Lyons; Yutao Fu; Nils Homer; Marina Sedova; Xin Miao; Brian Reed; Jeffrey Sabina; Erika Feierstein; Michelle Schorn; Mohammad Alanjary; Eileen Dimalanta; Devin Dressman; Rachel Kasinskas; Tanya Sokolsky; Jacqueline A Fidanza; Eugeni Namsaraev; Kevin J McKernan; Alan Williams; G Thomas Roth; James Bustillo
Journal:  Nature       Date:  2011-07-20       Impact factor: 49.962

4.  A whole-genome assembly of Drosophila.

Authors:  E W Myers; G G Sutton; A L Delcher; I M Dew; D P Fasulo; M J Flanigan; S A Kravitz; C M Mobarry; K H Reinert; K A Remington; E L Anson; R A Bolanos; H H Chou; C M Jordan; A L Halpern; S Lonardi; E M Beasley; R C Brandon; L Chen; P J Dunn; Z Lai; Y Liang; D R Nusskern; M Zhan; Q Zhang; X Zheng; G M Rubin; M D Adams; J C Venter
Journal:  Science       Date:  2000-03-24       Impact factor: 47.728

5.  Sulfobacillus thermosulfidooxidans: a new lineage of bacterial evolution?

Authors:  G I Karavajko; E S Bulygina; I A Tsaplina; T I Bogdanova; K M Chumakov
Journal:  FEBS Lett       Date:  1990-02-12       Impact factor: 4.124

6.  [Sulfobacillus, a new genus of thermophilic sporulating bacteria].

Authors:  R S Golovacheva; G I Karavaĭko
Journal:  Mikrobiologiia       Date:  1978 Sep-Oct

7.  [Effect of cultivation conditions on the growth and activities of sulfur metabolism enzymes and carboxylases of Sulfobacillus thermosulfidooxidans subsp. asporogenes strain 41].

Authors:  M A Egorova; I A Tsaplina; L M Zakharchuk; T I Bogdanova; E N Krasil'nikova
Journal:  Prikl Biokhim Mikrobiol       Date:  2004 Jul-Aug

8.  Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations.

Authors:  Gloria Levicán; Juan A Ugalde; Nicole Ehrenfeld; Alejandro Maass; Pilar Parada
Journal:  BMC Genomics       Date:  2008-12-03       Impact factor: 3.969

  8 in total
  12 in total

1.  Adaptive Evolution of Extreme Acidophile Sulfobacillus thermosulfidooxidans Potentially Driven by Horizontal Gene Transfer and Gene Loss.

Authors:  Xian Zhang; Xueduan Liu; Yili Liang; Xue Guo; Yunhua Xiao; Liyuan Ma; Bo Miao; Hongwei Liu; Deliang Peng; Wenkun Huang; Yuguang Zhang; Huaqun Yin
Journal:  Appl Environ Microbiol       Date:  2017-03-17       Impact factor: 4.792

2.  Comparison of environmental and isolate Sulfobacillus genomes reveals diverse carbon, sulfur, nitrogen, and hydrogen metabolisms.

Authors:  Nicholas B Justice; Anders Norman; Christopher T Brown; Andrea Singh; Brian C Thomas; Jillian F Banfield
Journal:  BMC Genomics       Date:  2014-12-15       Impact factor: 3.969

Review 3.  Microbial diversity and metabolic networks in acid mine drainage habitats.

Authors:  Celia Méndez-García; Ana I Peláez; Victoria Mesa; Jesús Sánchez; Olga V Golyshina; Manuel Ferrer
Journal:  Front Microbiol       Date:  2015-05-29       Impact factor: 5.640

Review 4.  In a quest for engineering acidophiles for biomining applications: challenges and opportunities.

Authors:  Yosephine Gumulya; Naomi J Boxall; Himel N Khaleque; Ville Santala; Ross P Carlson; Anna H Kaksonen
Journal:  Genes (Basel)       Date:  2018-02-21       Impact factor: 4.096

5.  The Bacterial Population of Neutral Mine Drainage Water of Elizabeth's Shaft (Slovinky, Slovakia).

Authors:  Jana Kisková; Zuzana Perháčová; Ladislav Vlčko; Jana Sedláková; Simona Kvasnová; Peter Pristaš
Journal:  Curr Microbiol       Date:  2018-03-12       Impact factor: 2.188

6.  Community of thermoacidophilic and arsenic resistant microorganisms isolated from a deep profile of mine heaps.

Authors:  S Casas-Flores; E Y Gómez-Rodríguez; J V García-Meza
Journal:  AMB Express       Date:  2015-08-19       Impact factor: 3.298

7.  Sulfobacillus thermosulfidooxidans strain Cutipay enhances chalcopyrite bioleaching under moderate thermophilic conditions in the presence of chloride ion.

Authors:  Roberto A Bobadilla-Fazzini; Maria Paz Cortés; Alejandro Maass; Pilar Parada
Journal:  AMB Express       Date:  2014-12-10       Impact factor: 3.298

8.  Sulfur Oxygenase Reductase (Sor) in the Moderately Thermoacidophilic Leaching Bacteria: Studies in Sulfobacillus thermosulfidooxidans and Acidithiobacillus caldus.

Authors:  Claudia Janosch; Francisco Remonsellez; Wolfgang Sand; Mario Vera
Journal:  Microorganisms       Date:  2015-10-21

9.  Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach.

Authors:  Philippe Bordron; Mauricio Latorre; Maria-Paz Cortés; Mauricio González; Sven Thiele; Anne Siegel; Alejandro Maass; Damien Eveillard
Journal:  Microbiologyopen       Date:  2015-12-17       Impact factor: 3.139

10.  Codon usage bias reveals genomic adaptations to environmental conditions in an acidophilic consortium.

Authors:  Andrew Hart; María Paz Cortés; Mauricio Latorre; Servet Martinez
Journal:  PLoS One       Date:  2018-05-09       Impact factor: 3.240

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