Literature DB >> 23105060

Complete genome sequence of Burkholderia sp. Strain GG4, a betaproteobacterium that reduces 3-oxo-N-acylhomoserine lactones and produces different N-acylhomoserine lactones.

Kar-Wai Hong1, Chong-Lek Koh, Choon-Kook Sam, Wai-Fong Yin, Kok-Gan Chan.   

Abstract

Burkholderia sp. strain GG4, isolated from the ginger rhizosphere, possesses a unique N-acylhomoserine lactone (AHL)-modifying activity that reduces 3-oxo-AHLs to 3-hydroxy-AHLs. To the best of our knowledge, this is the first sequenced genome from a bacterium of the genus Burkholderia that shows both quorum-sensing and signaling confusion activities.

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Year:  2012        PMID: 23105060      PMCID: PMC3486383          DOI: 10.1128/JB.01578-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  9 in total

1.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

2.  Synthesis of multiple N-acylhomoserine lactones is wide-spread among the members of the Burkholderia cepacia complex.

Authors:  A Gotschlich; B Huber; O Geisenberger; A Tögl; A Steidle; K Riedel; P Hill; B Tümmler; P Vandamme; B Middleton; M Camara; P Williams; A Hardman; L Eberl
Journal:  Syst Appl Microbiol       Date:  2001-04       Impact factor: 4.022

3.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

4.  Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.

Authors:  Ana Conesa; Stefan Götz; Juan Miguel García-Gómez; Javier Terol; Manuel Talón; Montserrat Robles
Journal:  Bioinformatics       Date:  2005-08-04       Impact factor: 6.937

Review 5.  Quorum quenching revisited--from signal decays to signalling confusion.

Authors:  Kar-Wai Hong; Chong-Lek Koh; Choon-Kook Sam; Wai-Fong Yin; Kok-Gan Chan
Journal:  Sensors (Basel)       Date:  2012-04-10       Impact factor: 3.576

6.  Characterization of N-acylhomoserine lactone-degrading bacteria associated with the Zingiber officinale (ginger) rhizosphere: co-existence of quorum quenching and quorum sensing in Acinetobacter and Burkholderia.

Authors:  Kok-Gan Chan; Steve Atkinson; Kalai Mathee; Choon-Kook Sam; Siri Ram Chhabra; Miguel Cámara; Chong-Lek Koh; Paul Williams
Journal:  BMC Microbiol       Date:  2011-03-08       Impact factor: 3.605

7.  NCBI Reference Sequences: current status, policy and new initiatives.

Authors:  Kim D Pruitt; Tatiana Tatusova; William Klimke; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2008-10-16       Impact factor: 16.971

8.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; David L Wheeler
Journal:  Nucleic Acids Res       Date:  2007-12-11       Impact factor: 16.971

9.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

  9 in total
  10 in total

1.  Identification and regulation of a novel Citrobacter rodentium gut colonization fimbria (Gcf).

Authors:  Gustavo G Caballero-Flores; Matthew A Croxen; Verónica I Martínez-Santos; B Brett Finlay; José L Puente
Journal:  J Bacteriol       Date:  2015-02-09       Impact factor: 3.490

2.  The Siderophore Product Ornibactin Is Required for the Bactericidal Activity of Burkholderia contaminans MS14.

Authors:  Peng Deng; Adam Foxfire; Jianhong Xu; Sonya M Baird; Jiayuan Jia; Keren H Delgado; Ronald Shin; Leif Smith; Shi-En Lu
Journal:  Appl Environ Microbiol       Date:  2017-03-31       Impact factor: 4.792

3.  Whole genome sequencing enables the characterization of BurI, a LuxI homologue of Burkholderia cepacia strain GG4.

Authors:  Kah Yan How; Kar Wai Hong; Kok-Gan Chan
Journal:  PeerJ       Date:  2015-08-06       Impact factor: 2.984

4.  Degradation of bacterial quorum sensing signaling molecules by the microscopic yeast Trichosporon loubieri isolated from tropical wetland waters.

Authors:  Cheng-Siang Wong; Chong-Lek Koh; Choon-Kook Sam; Jian Woon Chen; Yee Meng Chong; Wai-Fong Yin; Kok-Gan Chan
Journal:  Sensors (Basel)       Date:  2013-09-25       Impact factor: 3.576

5.  Unusual multiple production of N-acylhomoserine lactones a by Burkholderia sp. strain C10B isolated from dentine caries.

Authors:  Share Yuan Goh; Wen-Si Tan; Saad Ahmed Khan; Hooi Pin Chew; Noor Hayaty Abu Kasim; Wai-Fong Yin; Kok-Gan Chan
Journal:  Sensors (Basel)       Date:  2014-05-21       Impact factor: 3.576

6.  Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species.

Authors:  Amandeep Sawana; Mobolaji Adeolu; Radhey S Gupta
Journal:  Front Genet       Date:  2014-12-19       Impact factor: 4.599

7.  Disrupting quorum sensing alters social interactions in Chromobacterium violaceum.

Authors:  Sonia Mion; Nathan Carriot; Julien Lopez; Laure Plener; Annick Ortalo-Magné; Eric Chabrière; Gérald Culioli; David Daudé
Journal:  NPJ Biofilms Microbiomes       Date:  2021-04-22       Impact factor: 7.290

8.  N-acyl homoserine lactone-producing Pseudomonas putida strain T2-2 from human tongue surface.

Authors:  Jian-Woon Chen; Shenyang Chin; Kok Keng Tee; Wai-Fong Yin; Yeun Mun Choo; Kok-Gan Chan
Journal:  Sensors (Basel)       Date:  2013-09-30       Impact factor: 3.576

Review 9.  Quorum quenching agents: resources for antivirulence therapy.

Authors:  Kaihao Tang; Xiao-Hua Zhang
Journal:  Mar Drugs       Date:  2014-05-30       Impact factor: 5.118

10.  Comparative genome-wide analysis reveals that Burkholderia contaminans MS14 possesses multiple antimicrobial biosynthesis genes but not major genetic loci required for pathogenesis.

Authors:  Peng Deng; Xiaoqiang Wang; Sonya M Baird; Kurt C Showmaker; Leif Smith; Daniel G Peterson; Shien Lu
Journal:  Microbiologyopen       Date:  2016-01-14       Impact factor: 3.139

  10 in total

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