Literature DB >> 23105054

Genome sequence of Nitratireductor aquibiodomus strain RA22.

Ajit Singh1, Pramod Kumar Jangir, Chanchal Kumari, Rakesh Sharma.   

Abstract

The genus Nitratireductor represents nitrate-reducing bacteria from the family Phyllobacteriaceae. Here we report the draft genome sequence of Nitratireductor aquibiodomus strain RA22, which contains 4,592,790 bp, with a G+C content of 61.30%, and has 4,241 protein coding genes.

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Mesh：

Year:  2012        PMID： 23105054      PMCID： PMC3486402          DOI： 10.1128/JB.01510-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

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Journal:  Antonie Van Leeuwenhoek       Date:  2011-07-21       Impact factor: 2.271

2.  Improved microbial gene identification with GLIMMER.

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Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

3.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

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Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

4.  IMG ER: a system for microbial genome annotation expert review and curation.

Authors:  Victor M Markowitz; Konstantinos Mavromatis; Natalia N Ivanova; I-Min A Chen; Ken Chu; Nikos C Kyrpides
Journal:  Bioinformatics       Date:  2009-06-27       Impact factor: 6.937

5.  GeneMark.hmm: new solutions for gene finding.

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Journal:  Nucleic Acids Res       Date:  1998-02-15       Impact factor: 16.971

6.  Nitratireductor pacificus sp. nov., isolated from a pyrene-degrading consortium.

Authors:  Qiliang Lai; Zhiwei Yu; Jianning Wang; Huanzi Zhong; Fengqin Sun; Liping Wang; Baojiang Wang; Zongze Shao
Journal:  Int J Syst Evol Microbiol       Date:  2010-07-09       Impact factor: 2.747

7.  Nitratireductor indicus sp. nov., isolated from deep-sea water.

Authors:  Qiliang Lai; Zhiwei Yu; Jun Yuan; Fengqin Sun; Zongze Shao
Journal:  Int J Syst Evol Microbiol       Date:  2010-03-12       Impact factor: 2.747

8.  Nitratireductor aquibiodomus gen. nov., sp. nov., a novel alpha-proteobacterium from the marine denitrification system of the Montreal Biodome (Canada).

Authors:  Normand Labbé; Serge Parent; Richard Villemur
Journal:  Int J Syst Evol Microbiol       Date:  2004-01       Impact factor: 2.747

9.  CDD: a Conserved Domain Database for the functional annotation of proteins.

Authors:  Aron Marchler-Bauer; Shennan Lu; John B Anderson; Farideh Chitsaz; Myra K Derbyshire; Carol DeWeese-Scott; Jessica H Fong; Lewis Y Geer; Renata C Geer; Noreen R Gonzales; Marc Gwadz; David I Hurwitz; John D Jackson; Zhaoxi Ke; Christopher J Lanczycki; Fu Lu; Gabriele H Marchler; Mikhail Mullokandov; Marina V Omelchenko; Cynthia L Robertson; James S Song; Narmada Thanki; Roxanne A Yamashita; Dachuan Zhang; Naigong Zhang; Chanjuan Zheng; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2010-11-24       Impact factor: 16.971

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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