Literature DB >> 23105052

Genome sequence of Pseudomonas aeruginosa DQ8, an efficient degrader of n-alkanes and polycyclic aromatic hydrocarbons.

Zhonghui Gai1, Zhengzhi Zhang, Xiaoyu Wang, Fei Tao, Hongzhi Tang, Ping Xu.   

Abstract

Pseudomonas aeruginosa DQ8, which was isolated from the crude oil polluted soil in the Daqing oilfield of China, can efficiently degrade diesel, crude oil, n-alkanes, and polycyclic aromatic hydrocarbons (PAHs). Here, we present a 6.8-Mb assembly of its genome sequence. We have annotated 23 coding sequences (CDSs) responsible for catabolism of n-alkanes and PAHs.

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Year:  2012        PMID： 23105052      PMCID： PMC3486398          DOI： 10.1128/JB.01499-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

Review 1.  Biodegradation of high-molecular-weight polycyclic aromatic hydrocarbons by bacteria.

Authors:  R A Kanaly; S Harayama
Journal:  J Bacteriol       Date:  2000-04       Impact factor: 3.490

Review 2.  The causes of Pseudomonas diversity.

Authors:  A J Spiers; A Buckling; P B Rainey
Journal:  Microbiology       Date:  2000-10       Impact factor: 2.777

3.  Organization and transcriptional characterization of catechol degradation genes involved in carbazole degradation by Pseudomonas resinovorans strain CA10.

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Journal:  Biosci Biotechnol Biochem       Date:  2002-04       Impact factor: 2.043

4.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

5.  Analysis of Pseudomonas putida alkane-degradation gene clusters and flanking insertion sequences: evolution and regulation of the alk genes.

Authors:  J B van Beilen; S Panke; S Lucchini; A G Franchini; M Röthlisberger; B Witholt
Journal:  Microbiology       Date:  2001-06       Impact factor: 2.777

6.  Degradation of n-alkanes and polycyclic aromatic hydrocarbons in petroleum by a newly isolated Pseudomonas aeruginosa DQ8.

Authors:  Zhengzhi Zhang; Zhaowei Hou; Chunyu Yang; Cuiqing Ma; Fei Tao; Ping Xu
Journal:  Bioresour Technol       Date:  2010-12-22       Impact factor: 9.642

7.  Degradation of alkyl methyl ketones by Pseudomonas veronii MEK700.

Authors:  Christina Onaca; Martin Kieninger; Karl-H Engesser; Josef Altenbuchner
Journal:  J Bacteriol       Date:  2007-03-09       Impact factor: 3.490

8.  A novel catabolic activity of Pseudomonas veronii in biotransformation of pentachlorophenol.

Authors:  I-H Nam; Y-S Chang; H-B Hong; Y-E Lee
Journal:  Appl Microbiol Biotechnol       Date:  2003-02-26       Impact factor: 4.813

9.  NCBI Reference Sequences: current status, policy and new initiatives.

Authors:  Kim D Pruitt; Tatiana Tatusova; William Klimke; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2008-10-16       Impact factor: 16.971

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  3 in total

Review 1.  Current research on simultaneous oxidation of aliphatic and aromatic hydrocarbons by bacteria of genus Pseudomonas.

Authors:  Anastasiya A Ivanova; Svetlana A Mullaeva; Olesya I Sazonova; Kirill V Petrikov; Anna A Vetrova
Journal:  Folia Microbiol (Praha)       Date:  2022-03-22       Impact factor: 2.629

2.  Aflatoxin B₁ degradation by a Pseudomonas strain.

Authors:  Lancine Sangare; Yueju Zhao; Yawa Minnie Elodie Folly; Jinghua Chang; Jinhan Li; Jonathan Nimal Selvaraj; Fuguo Xing; Lu Zhou; Yan Wang; Yang Liu
Journal:  Toxins (Basel)       Date:  2014-10-23       Impact factor: 4.546

3.  Reorganization of gene network for degradation of polycyclic aromatic hydrocarbons (PAHs) in Pseudomonas aeruginosa PAO1 under several conditions.

Authors:  Shaomin Yan; Guang Wu
Journal:  J Appl Genet       Date:  2017-07-07       Impact factor: 3.240
  3 in total

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