Literature DB >> 23104279

Real-time quantitative PCR, pathogen detection and MIQE.

Gemma Johnson1, Tania Nolan, Stephen A Bustin.   

Abstract

Nucleic acids are the ultimate biomarker and real-time PCR (qPCR) is firmly established as the method of choice for nucleic acid detection. Together, they allow the accurate, sensitive and specific identification of pathogens, and the use of qPCR has become routine in diagnostic laboratories. The reliability of qPCR-based assays relies on a combination of optimal sample selection, assay design and validation as well as appropriate data analysis and the "Minimal Information for the Publication of real-time PCR" (MIQE) guidelines aim to improve both the reliability of assay design as well as the transparency of reporting, essential conditions if qPCR is to remain the benchmark technology for molecular diagnosis.

Mesh:

Year:  2013        PMID: 23104279     DOI: 10.1007/978-1-60327-353-4_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  17 in total

1.  Systematic evaluation of TaqMan real-time polymerase chain reaction assays targeting the dsb and gltA loci of Ehrlichia canis in recombinant plasmids and naturally infected dogs.

Authors:  Peeravit Sumpavong; Wanat Sricharern; Natnaree Inthong; Gunn Kaewmongkol; Sarawan Kaewmongkol
Journal:  Vet World       Date:  2022-03-25

2.  Optimization of PCR for quantification of simian immunodeficiency virus genomic RNA in plasma of rhesus macaques (Macaca mulatta) using armored RNA.

Authors:  C J Monjure; C D Tatum; A T Panganiban; M Arainga; V Traina-Dorge; P A Marx; E S Didier
Journal:  J Med Primatol       Date:  2013-11-22       Impact factor: 0.667

3.  Comparison between conventional and real-time PCR assays for diagnosis of visceral leishmaniasis.

Authors:  Mariana R Pereira; Fabiana Rocha-Silva; Cidiane Graciele-Melo; Camila R Lafuente; Telcia Magalhães; Rachel B Caligiorne
Journal:  Biomed Res Int       Date:  2014-02-06       Impact factor: 3.411

4.  Biomarkers for monitoring pre-analytical quality variation of mRNA in blood samples.

Authors:  Hui Zhang; Vlasta Korenková; Robert Sjöback; David Švec; Jens Björkman; Mogens Kruhøffer; Paolo Verderio; Sara Pizzamiglio; Chiara Maura Ciniselli; Ralf Wyrich; Uwe Oelmueller; Mikael Kubista; Torbjørn Lindahl; Anders Lönneborg; Edith Rian
Journal:  PLoS One       Date:  2014-11-04       Impact factor: 3.240

Review 5.  Nucleic Acid-based approaches for detection of viral hepatitis.

Authors:  Payam Behzadi; Reza Ranjbar; Seyed Moayed Alavian
Journal:  Jundishapur J Microbiol       Date:  2014-12-10       Impact factor: 0.747

Review 6.  A Basic Guide to Real Time PCR in Microbial Diagnostics: Definitions, Parameters, and Everything.

Authors:  Petr Kralik; Matteo Ricchi
Journal:  Front Microbiol       Date:  2017-02-02       Impact factor: 5.640

7.  Characterization of plasmids in extensively drug-resistant acinetobacter strains isolated in India and Pakistan.

Authors:  Lim S Jones; Maria J Carvalho; Mark A Toleman; P Lewis White; Thomas R Connor; Ammara Mushtaq; Janis L Weeks; Karthikeyan K Kumarasamy; Katherine E Raven; M Estée Török; Sharon J Peacock; Robin A Howe; Timothy R Walsh
Journal:  Antimicrob Agents Chemother       Date:  2014-11-24       Impact factor: 5.191

8.  Quantification of Gram-positive bacteria: adaptation and evaluation of a preparation strategy using high amounts of clinical tissue.

Authors:  Evelyne Mann; Katharina Pommer; Patrick Mester; Martin Wagner; Peter Rossmanith
Journal:  BMC Vet Res       Date:  2014-03-03       Impact factor: 2.741

9.  Antifungal prophylaxis of patients undergoing allogenetic hematopoietic stem cell transplantation in China: a multicenter prospective observational study.

Authors:  Lei Gao; Yuqian Sun; Fanyi Meng; Mingzhe Han; He Huang; Depei Wu; Li Yu; Hanyun Ren; Xiaojun Huang; Xi Zhang
Journal:  J Hematol Oncol       Date:  2016-09-23       Impact factor: 17.388

10.  Comparison of qPCR versus culture for the detection and quantification of Clostridium difficile environmental contamination.

Authors:  Laura K MacDougall; George Broukhanski; Andrew Simor; Jennie Johnstone; Samira Mubareka; Allison McGeer; Nick Daneman; Gary Garber; Kevin A Brown
Journal:  PLoS One       Date:  2018-08-30       Impact factor: 3.240

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