Literature DB >> 23104063

FOXA1 and breast cancer risk.

Kerstin B Meyer1, Jason S Carroll.   

Abstract

Many SNPs associated with human disease are located in non-coding regions of the genome. A new study shows that SNPs associated with breast cancer risk are located in enhancer regions and alter binding affinity for the pioneer factor FOXA1.

Entities:  

Mesh：

Substances：

Year:  2012        PMID： 23104063     DOI： 10.1038/ng.2449

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


  14 in total

1.  FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription.

Authors:  Mathieu Lupien; Jérôme Eeckhoute; Clifford A Meyer; Qianben Wang; Yong Zhang; Wei Li; Jason S Carroll; X Shirley Liu; Myles Brown
Journal:  Cell       Date:  2008-03-21       Impact factor: 41.582

2.  Regulation of estrogen receptor-mediated long range transcription via evolutionarily conserved distal response elements.

Authors:  You Fu Pan; K D Senali Abayratna Wansa; Mei Hui Liu; Bing Zhao; Shu Zhen Hong; Peck Yean Tan; Kar Sian Lim; Guillaume Bourque; Edison T Liu; Edwin Cheung
Journal:  J Biol Chem       Date:  2008-08-25       Impact factor: 5.157

3.  Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1.

Authors:  Jason S Carroll; X Shirley Liu; Alexander S Brodsky; Wei Li; Clifford A Meyer; Anna J Szary; Jerome Eeckhoute; Wenlin Shao; Eli V Hestermann; Timothy R Geistlinger; Edward A Fox; Pamela A Silver; Myles Brown
Journal:  Cell       Date:  2005-07-15       Impact factor: 41.582

4.  An oestrogen-receptor-alpha-bound human chromatin interactome.

Authors:  Melissa J Fullwood; Mei Hui Liu; You Fu Pan; Jun Liu; Han Xu; Yusoff Bin Mohamed; Yuriy L Orlov; Stoyan Velkov; Andrea Ho; Poh Huay Mei; Elaine G Y Chew; Phillips Yao Hui Huang; Willem-Jan Welboren; Yuyuan Han; Hong Sain Ooi; Pramila N Ariyaratne; Vinsensius B Vega; Yanquan Luo; Peck Yean Tan; Pei Ye Choy; K D Senali Abayratna Wansa; Bing Zhao; Kar Sian Lim; Shi Chi Leow; Jit Sin Yow; Roy Joseph; Haixia Li; Kartiki V Desai; Jane S Thomsen; Yew Kok Lee; R Krishna Murthy Karuturi; Thoreau Herve; Guillaume Bourque; Hendrik G Stunnenberg; Xiaoan Ruan; Valere Cacheux-Rataboul; Wing-Kin Sung; Edison T Liu; Chia-Lin Wei; Edwin Cheung; Yijun Ruan
Journal:  Nature       Date:  2009-11-05       Impact factor: 49.962

5.  Common breast cancer-predisposition alleles are associated with breast cancer risk in BRCA1 and BRCA2 mutation carriers.

Authors:  Antonis C Antoniou; Amanda B Spurdle; Olga M Sinilnikova; Sue Healey; Karen A Pooley; Rita K Schmutzler; Beatrix Versmold; Christoph Engel; Alfons Meindl; Norbert Arnold; Wera Hofmann; Christian Sutter; Dieter Niederacher; Helmut Deissler; Trinidad Caldes; Kati Kämpjärvi; Heli Nevanlinna; Jacques Simard; Jonathan Beesley; Xiaoqing Chen; Susan L Neuhausen; Timothy R Rebbeck; Theresa Wagner; Henry T Lynch; Claudine Isaacs; Jeffrey Weitzel; Patricia A Ganz; Mary B Daly; Gail Tomlinson; Olufunmilayo I Olopade; Joanne L Blum; Fergus J Couch; Paolo Peterlongo; Siranoush Manoukian; Monica Barile; Paolo Radice; Csilla I Szabo; Lutecia H Mateus Pereira; Mark H Greene; Gad Rennert; Flavio Lejbkowicz; Ofra Barnett-Griness; Irene L Andrulis; Hilmi Ozcelik; Anne-Marie Gerdes; Maria A Caligo; Yael Laitman; Bella Kaufman; Roni Milgrom; Eitan Friedman; Susan M Domchek; Katherine L Nathanson; Ana Osorio; Gemma Llort; Roger L Milne; Javier Benítez; Ute Hamann; Frans B L Hogervorst; Peggy Manders; Marjolijn J L Ligtenberg; Ans M W van den Ouweland; Susan Peock; Margaret Cook; Radka Platte; D Gareth Evans; Rosalind Eeles; Gabriella Pichert; Carol Chu; Diana Eccles; Rosemarie Davidson; Fiona Douglas; Andrew K Godwin; Laure Barjhoux; Sylvie Mazoyer; Hagay Sobol; Violaine Bourdon; François Eisinger; Agnès Chompret; Corinne Capoulade; Brigitte Bressac-de Paillerets; Gilbert M Lenoir; Marion Gauthier-Villars; Claude Houdayer; Dominique Stoppa-Lyonnet; Georgia Chenevix-Trench; Douglas F Easton
Journal:  Am J Hum Genet       Date:  2008-03-20       Impact factor: 11.025

6.  Genome-wide association studies in cancer.

Authors:  Douglas F Easton; Rosalind A Eeles
Journal:  Hum Mol Genet       Date:  2008-10-15       Impact factor: 6.150

7.  Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state.

Authors:  Say Li Kong; Guoliang Li; Siang Lin Loh; Wing-Kin Sung; Edison T Liu
Journal:  Mol Syst Biol       Date:  2011-08-30       Impact factor: 11.429

8.  Genome-wide association study identifies novel breast cancer susceptibility loci.

Authors:  Douglas F Easton; Karen A Pooley; Alison M Dunning; Paul D P Pharoah; Deborah Thompson; Dennis G Ballinger; Jeffery P Struewing; Jonathan Morrison; Helen Field; Robert Luben; Nicholas Wareham; Shahana Ahmed; Catherine S Healey; Richard Bowman; Kerstin B Meyer; Christopher A Haiman; Laurence K Kolonel; Brian E Henderson; Loic Le Marchand; Paul Brennan; Suleeporn Sangrajrang; Valerie Gaborieau; Fabrice Odefrey; Chen-Yang Shen; Pei-Ei Wu; Hui-Chun Wang; Diana Eccles; D Gareth Evans; Julian Peto; Olivia Fletcher; Nichola Johnson; Sheila Seal; Michael R Stratton; Nazneen Rahman; Georgia Chenevix-Trench; Stig E Bojesen; Børge G Nordestgaard; Christen K Axelsson; Montserrat Garcia-Closas; Louise Brinton; Stephen Chanock; Jolanta Lissowska; Beata Peplonska; Heli Nevanlinna; Rainer Fagerholm; Hannaleena Eerola; Daehee Kang; Keun-Young Yoo; Dong-Young Noh; Sei-Hyun Ahn; David J Hunter; Susan E Hankinson; David G Cox; Per Hall; Sara Wedren; Jianjun Liu; Yen-Ling Low; Natalia Bogdanova; Peter Schürmann; Thilo Dörk; Rob A E M Tollenaar; Catharina E Jacobi; Peter Devilee; Jan G M Klijn; Alice J Sigurdson; Michele M Doody; Bruce H Alexander; Jinghui Zhang; Angela Cox; Ian W Brock; Gordon MacPherson; Malcolm W R Reed; Fergus J Couch; Ellen L Goode; Janet E Olson; Hanne Meijers-Heijboer; Ans van den Ouweland; André Uitterlinden; Fernando Rivadeneira; Roger L Milne; Gloria Ribas; Anna Gonzalez-Neira; Javier Benitez; John L Hopper; Margaret McCredie; Melissa Southey; Graham G Giles; Chris Schroen; Christina Justenhoven; Hiltrud Brauch; Ute Hamann; Yon-Dschun Ko; Amanda B Spurdle; Jonathan Beesley; Xiaoqing Chen; Arto Mannermaa; Veli-Matti Kosma; Vesa Kataja; Jaana Hartikainen; Nicholas E Day; David R Cox; Bruce A J Ponder
Journal:  Nature       Date:  2007-06-28       Impact factor: 49.962

9.  Breast cancer risk-associated SNPs modulate the affinity of chromatin for FOXA1 and alter gene expression.

Authors:  Richard Cowper-Sal lari; Xiaoyang Zhang; Jason B Wright; Swneke D Bailey; Michael D Cole; Jerome Eeckhoute; Jason H Moore; Mathieu Lupien
Journal:  Nat Genet       Date:  2012-09-23       Impact factor: 38.330

10.  Allele-specific up-regulation of FGFR2 increases susceptibility to breast cancer.

Authors:  Kerstin B Meyer; Ana-Teresa Maia; Martin O'Reilly; Andrew E Teschendorff; Suet-Feung Chin; Carlos Caldas; Bruce A J Ponder
Journal:  PLoS Biol       Date:  2008-05-06       Impact factor: 8.029
View more
  14 in total

1.  FOXA1 Protein Expression in ER+ and ER- Breast Cancer in Relation to Parity and Breastfeeding in Black and White Women.

Authors:  Ting-Yuan David Cheng; Song Yao; Angela R Omilian; Thaer Khoury; Matthew F Buas; Rochelle Payne-Ondracek; Sirinapa Sribenja; Wiam Bshara; Chi-Chen Hong; Elisa V Bandera; Warren Davis; Michael J Higgins; Christine B Ambrosone
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2019-12-23       Impact factor: 4.254

2.  FOXA1 transcriptionally up-regulates cyclin B1 expression to enhance chondrosarcoma progression.

Authors:  Zong-Shin Lin; Chiao-Chen Chung; Yu-Chia Liu; Tsung-Ming Chen; Yung-Luen Yu; Shao-Chun Wang; Ya-Huey Chen
Journal:  Am J Cancer Res       Date:  2018-10-01       Impact factor: 6.166

3.  A MIXED-EFFECTS MODEL FOR INCOMPLETE DATA FROM LABELING-BASED QUANTITATIVE PROTEOMICS EXPERIMENTS.

Authors:  Lin S Chen; Jiebiao Wang; Xianlong Wang; Pei Wang
Journal:  Ann Appl Stat       Date:  2017-04-08       Impact factor: 2.083

4.  The Discovery of Novel Biomarkers Improves Breast Cancer Intrinsic Subtype Prediction and Reconciles the Labels in the METABRIC Data Set.

Authors:  Heloisa Helena Milioli; Renato Vimieiro; Carlos Riveros; Inna Tishchenko; Regina Berretta; Pablo Moscato
Journal:  PLoS One       Date:  2015-07-01       Impact factor: 3.240

5.  REACTIN: regulatory activity inference of transcription factors underlying human diseases with application to breast cancer.

Authors:  Mingzhu Zhu; Chun-Chi Liu; Chao Cheng
Journal:  BMC Genomics       Date:  2013-07-26       Impact factor: 3.969

6.  BGRMI: A method for inferring gene regulatory networks from time-course gene expression data and its application in breast cancer research.

Authors:  Luis F Iglesias-Martinez; Walter Kolch; Tapesh Santra
Journal:  Sci Rep       Date:  2016-11-23       Impact factor: 4.379

7.  Primate-specific oestrogen-responsive long non-coding RNAs regulate proliferation and viability of human breast cancer cells.

Authors:  Chin-Yo Lin; Erica L Kleinbrink; Fabien Dachet; Juan Cai; Donghong Ju; Amanda Goldstone; Emily J Wood; Ka Liu; Hui Jia; Anton-Scott Goustin; Mary A Kosir; Pattaraporn Thepsuwan; Leonard Lipovich
Journal:  Open Biol       Date:  2016-12       Impact factor: 6.411

8.  SALMON: Survival Analysis Learning With Multi-Omics Neural Networks on Breast Cancer.

Authors:  Zhi Huang; Xiaohui Zhan; Shunian Xiang; Travis S Johnson; Bryan Helm; Christina Y Yu; Jie Zhang; Paul Salama; Maher Rizkalla; Zhi Han; Kun Huang
Journal:  Front Genet       Date:  2019-03-08       Impact factor: 4.599

9.  Association between CASC16 rs4784227 polymorphism and breast cancer susceptibility: A meta-analysis.

Authors:  Xiong-Shun Liang; Jun-Luan Mo; Li-Ming Hu; Chun-Mei Gong; Tao Liu; Wen-Xu Hong; Ji-Ye Yin; Zhao-Qian Liu; Hong-Hao Zhou
Journal:  Medicine (Baltimore)       Date:  2021-07-16       Impact factor: 1.817

10.  ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles.

Authors:  Tiago C Silva; Simon G Coetzee; Nicole Gull; Lijing Yao; Dennis J Hazelett; Houtan Noushmehr; De-Chen Lin; Benjamin P Berman
Journal:  Bioinformatics       Date:  2019-06-01       Impact factor: 6.937
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.