Literature DB >> 23100830

Sequence analysis of a salt tolerant metagenomic clone.

Raj Kishor Kapardar1, Ravi Ranjan, Munish Puri, Rakesh Sharma.   

Abstract

Metagenome represent an unlimited resource for discovery of novel genes. Here we report, sequence analysis of a salt tolerant metagenomic clone (6B4) from a pond water metagenomic library. Clone 6B4 had an insert of 2254 bp with G+C composition of 64.06%. DNA sequence from 6B4 showed homology to DNA sequences from pro-teobacteria indicating origin of 6B4 metagenomic insert from a yet uncharacterized proteobacteria. Two encoded proteins from clone 6B4 showed match with ATP-depen-dent Clp protease adaptor protein (ClpS) and phasin, while two truncated encoded proteins showed match with poly-3-hydroxybutyrate synthase and permease. Clp complex is known to play a role in stress tolerance. Expression of ClpS from metagenomic clone is proposed to be responsible for salt tolerance of the metagenomic clone 6B4.

Entities:  

Keywords:  ClpS; Metagenome; Metagenomic; Salt tolerance

Year:  2010        PMID: 23100830      PMCID: PMC3450326          DOI: 10.1007/s12088-010-0041-x

Source DB:  PubMed          Journal:  Indian J Microbiol        ISSN: 0046-8991            Impact factor:   2.461


  5 in total

1.  Functional metagenomics reveals novel salt tolerance loci from the human gut microbiome.

Authors:  Eamonn P Culligan; Roy D Sleator; Julian R Marchesi; Colin Hill
Journal:  ISME J       Date:  2012-04-26       Impact factor: 10.302

2.  Bio-Prospecting Laccases in the Bacterial Diversity of Activated Sludge From Pulp and Paper Industry.

Authors:  Vijaya Gupta; Neena Capalash; Naveen Gupta; Prince Sharma
Journal:  Indian J Microbiol       Date:  2016-09-26       Impact factor: 2.461

3.  Functional environmental screening of a metagenomic library identifies stlA; a unique salt tolerance locus from the human gut microbiome.

Authors:  Eamonn P Culligan; Roy D Sleator; Julian R Marchesi; Colin Hill
Journal:  PLoS One       Date:  2013-12-12       Impact factor: 3.240

4.  Metagenomic Profiling of Soil Microbes to Mine Salt Stress Tolerance Genes.

Authors:  Vasim Ahmed; Manoj K Verma; Shashank Gupta; Vibha Mandhan; Nar S Chauhan
Journal:  Front Microbiol       Date:  2018-02-08       Impact factor: 5.640

5.  Molecular and Biochemical Characterization of Salt-Tolerant Trehalose-6-Phosphate Hydrolases Identified by Screening and Sequencing Salt-Tolerant Clones From the Metagenomic Library of the Gastrointestinal Tract.

Authors:  Yanxia Yang; Yunjuan Yang; Qin Fan; Zunxi Huang; Junjun Li; Qian Wu; Xianghua Tang; Junmei Ding; Nanyu Han; Bo Xu
Journal:  Front Microbiol       Date:  2020-07-07       Impact factor: 5.640

  5 in total

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