Literature DB >> 23098881

Construction of short tandem target mimic (STTM) to block the functions of plant and animal microRNAs.

Guiliang Tang1, Jun Yan, Yiyou Gu, Mengmeng Qiao, Ruiwen Fan, Yiping Mao, Xiaoqing Tang.   

Abstract

Small RNAs are widespread in plants and animals. They largely include microRNAs (miRNAs) and short interfering RNAs (siRNAs), and they play key roles in gene and chromatin regulations. Here we describe in detail the method for an effective construction of the recently developed short tandem target mimic (STTM) technology to block small RNA functions in plants and animals. STTM is a powerful technology complementing the previous target mimic (TM) in plants and the miRNA sponge, as well as the recently defined endogenous competing RNA (CeRNA) in animals. We expect STTM will not only be effective in blocking small RNA functions in plants but will also become a popular approach in animals.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23098881      PMCID: PMC3631596          DOI: 10.1016/j.ymeth.2012.10.006

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  25 in total

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Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

2.  Elucidation of the small RNA component of the transcriptome.

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3.  Identification of glucose-regulated miRNAs from pancreatic {beta} cells reveals a role for miR-30d in insulin transcription.

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Journal:  RNA       Date:  2008-12-18       Impact factor: 4.942

4.  The early extra petals1 mutant uncovers a role for microRNA miR164c in regulating petal number in Arabidopsis.

Authors:  Catherine C Baker; Patrick Sieber; Frank Wellmer; Elliot M Meyerowitz
Journal:  Curr Biol       Date:  2005-02-22       Impact factor: 10.834

5.  MicroRNA-30d induces insulin transcription factor MafA and insulin production by targeting mitogen-activated protein 4 kinase 4 (MAP4K4) in pancreatic β-cells.

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Journal:  J Biol Chem       Date:  2012-06-25       Impact factor: 5.157

6.  MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes.

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7.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.

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Journal:  Nat Genet       Date:  2007-07-22       Impact factor: 38.330

Review 9.  MicroRNAs: target recognition and regulatory functions.

Authors:  David P Bartel
Journal:  Cell       Date:  2009-01-23       Impact factor: 41.582

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  45 in total

1.  Short tandem target mimic rice lines uncover functions of miRNAs in regulating important agronomic traits.

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Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-01       Impact factor: 11.205

2.  Knockdown of Rice MicroRNA166 Confers Drought Resistance by Causing Leaf Rolling and Altering Stem Xylem Development.

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3.  Oomycete small RNAs bind to the plant RNA-induced silencing complex for virulence.

Authors:  Florian Dunker; Adriana Trutzenberg; Jan S Rothenpieler; Sarah Kuhn; Reinhard Pröls; Tom Schreiber; Alain Tissier; Ariane Kemen; Eric Kemen; Ralph Hückelhoven; Arne Weiberg
Journal:  Elife       Date:  2020-05-22       Impact factor: 8.140

4.  Down-regulation of genes coding for core RNAi components and disease resistance proteins via corresponding microRNAs might be correlated with successful Soybean mosaic virus infection in soybean.

Authors:  Duran Bao; Oyunchuluun Ganbaatar; Xiuqi Cui; Ruonan Yu; Wenhua Bao; Bryce W Falk; Hada Wuriyanghan
Journal:  Mol Plant Pathol       Date:  2017-09-25       Impact factor: 5.663

Review 5.  The 'how' and 'where' of plant microRNAs.

Authors:  Yu Yu; Tianran Jia; Xuemei Chen
Journal:  New Phytol       Date:  2017-10-19       Impact factor: 10.151

6.  Degradation of Fungal MicroRNAs Triggered by Short Tandem Target Mimics Is via the Small-RNA-Degrading Nuclease.

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Journal:  Appl Environ Microbiol       Date:  2019-04-18       Impact factor: 4.792

7.  The lncRNA n340790 accelerates carcinogenesis of thyroid cancer by regulating miR-1254.

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8.  Small tandem target mimic-mediated blockage of microRNA858 induces anthocyanin accumulation in tomato.

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Review 10.  MicroRNAs as pharmacological targets in diabetes.

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