Literature DB >> 23090238

Molecular phylogeny, population genetics, and evolution of heterocystous cyanobacteria using nifH gene sequences.

Prashant Singh1, Satya Shila Singh, Josef Elster, Arun Kumar Mishra.   

Abstract

In order to assess phylogeny, population genetics, and approximation of future course of cyanobacterial evolution based on nifH gene sequences, 41 heterocystous cyanobacterial strains collected from all over India have been used in the present study. NifH gene sequence analysis data confirm that the heterocystous cyanobacteria are monophyletic while the stigonematales show polyphyletic origin with grave intermixing. Further, analysis of nifH gene sequence data using intricate mathematical extrapolations revealed that the nucleotide diversity and recombination frequency is much greater in Nostocales than the Stigonematales. Similarly, DNA divergence studies showed significant values of divergence with greater gene conversion tracts in the unbranched (Nostocales) than the branched (Stigonematales) strains. Our data strongly support the origin of true branching cyanobacterial strains from the unbranched strains.

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Year:  2012        PMID: 23090238     DOI: 10.1007/s00709-012-0460-0

Source DB:  PubMed          Journal:  Protoplasma        ISSN: 0033-183X            Impact factor:   3.356


  18 in total

1.  Determinative value of a portion of the nifH sequence for the genera Nostoc and Anabaena (cyanobacteria).

Authors:  I Tamas; Z Svircev; S G Andersson
Journal:  Curr Microbiol       Date:  2000-09       Impact factor: 2.188

2.  Phylogenetic comparison of the cyanobacterial genera Anabaena and Aphanizomenon.

Authors:  Muriel Gugger; Christina Lyra; Peter Henriksen; Alain Couté; Jean-François Humbert; Kaarina Sivonen
Journal:  Int J Syst Evol Microbiol       Date:  2002-09       Impact factor: 2.747

3.  Molecular differentiation of the heterocystous cyanobacteria, Nostoc and Anabaena, based on complete NifD sequences.

Authors:  Brian J Henson; Linda E Watson; Susan R Barnum
Journal:  Curr Microbiol       Date:  2002-09       Impact factor: 2.188

4.  Molecular phylogeny of the heterocystous cyanobacteria (subsections IV and V) based on nifD.

Authors:  Brian J Henson; Sharon M Hesselbrock; Linda E Watson; Susan R Barnum
Journal:  Int J Syst Evol Microbiol       Date:  2004-03       Impact factor: 2.747

5.  Phylogenetic comparison among the heterocystous cyanobacteria based on a polyphasic approach.

Authors:  Arun Kumar Mishra; Ekta Shukla; Satya Shila Singh
Journal:  Protoplasma       Date:  2012-02-04       Impact factor: 3.356

6.  Genetic diversity of Cylindrospermopsis strains (cyanobacteria) isolated from four continents.

Authors:  Muriel Gugger; Renato Molica; Brigitte Le Berre; Philippe Dufour; Cécile Bernard; Jean-François Humbert
Journal:  Appl Environ Microbiol       Date:  2005-02       Impact factor: 4.792

7.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

8.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

9.  Phylogeny of cyanobacterial nifH genes: evolutionary implications and potential applications to natural assemblages.

Authors:  Jonathan P Zehr; Mark T Mellon; William D Hiorns
Journal:  Microbiology (Reading)       Date:  1997-04       Impact factor: 2.777

10.  Nucleotide sequence of a cyanobacterial nifH gene coding for nitrogenase reductase.

Authors:  M Mevarech; D Rice; R Haselkorn
Journal:  Proc Natl Acad Sci U S A       Date:  1980-11       Impact factor: 11.205

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  3 in total

1.  Decoding cyanobacterial phylogeny and molecular evolution using an evonumeric approach.

Authors:  Prashant Singh; Satya Shila Singh; Marina Aboal; Arun Kumar Mishra
Journal:  Protoplasma       Date:  2014-09-17       Impact factor: 3.356

2.  Phylogenetic analysis and molecular signatures defining a monophyletic clade of heterocystous cyanobacteria and identifying its closest relatives.

Authors:  Mohammad Howard-Azzeh; Larissa Shamseer; Herb E Schellhorn; Radhey S Gupta
Journal:  Photosynth Res       Date:  2014-06-11       Impact factor: 3.573

3.  Phylogenetic analysis of heterocystous cyanobacteria (Subsections IV and V) using highly iterated palindromes as molecular markers.

Authors:  Prashant Singh; Manish Singh Kaushik; Meenakshi Srivastava; Arun Kumar Mishra
Journal:  Physiol Mol Biol Plants       Date:  2014-07-08
  3 in total

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