Literature DB >> 23089650

Nature of the attractive interaction between proton acceptors and organic ring systems.

Emmanuel Arras1, Ari Paavo Seitsonen, Florian Klappenberger, Johannes V Barth.   

Abstract

Systematic ab initio calculations are combined with a deconvolution of electrostatic contributions to analyze the interplay between potential hydrogen bond acceptors and organic rings with C(sp(2))-H groups (benzene, pyridine and cyclopentadiene). A distinct anisotropic interaction between the ring systems and the electron lone pairs of cyanide, water and other acceptor species is revealed that favors the in-plane orientation of the proton acceptor group. In the attractive regime this interaction carries a pronounced electrostatic signature. By decomposing the electrostatic contribution into parts attributed to different subunits of the ring systems we demonstrate that a major proportion of the interaction energy gain is originating from the non-adjacent moieties, that are not in close contact with. This behavior holds equally for homocyclic, heterocyclic and non-aromatic rings but contrasts that of the ethyne molecule, taken as reference for a weak hydrogen bond donor clearly exhibiting the expected localized character. The ring interaction requires the presence of π-electron clouds and typically results in an interaction energy gain of 40 to 80 meV. Our findings suggest the proton acceptor-ring interaction as a new category of intermolecular non-covalent interactions.

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Year:  2012        PMID: 23089650     DOI: 10.1039/c2cp42293j

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  4 in total

1.  Five-vertex Archimedean surface tessellation by lanthanide-directed molecular self-assembly.

Authors:  David Ecija; José I Urgel; Anthoula C Papageorgiou; Sushobhan Joshi; Willi Auwärter; Ari P Seitsonen; Svetlana Klyatskaya; Mario Ruben; Sybille Fischer; Saranyan Vijayaraghavan; Joachim Reichert; Johannes V Barth
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-10       Impact factor: 11.205

2.  Molecular mechanism of pH-dependent substrate transport by an arginine-agmatine antiporter.

Authors:  Sheng Wang; Renhong Yan; Xi Zhang; Qi Chu; Yigong Shi
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-18       Impact factor: 11.205

3.  Synthesis, characterization, monolayer assembly and 2D lanthanide coordination of a linear terphenyl-di(propiolonitrile) linker on Ag(111).

Authors:  Zhi Chen; Svetlana Klyatskaya; José I Urgel; David Écija; Olaf Fuhr; Willi Auwärter; Johannes V Barth; Mario Ruben
Journal:  Beilstein J Nanotechnol       Date:  2015-01-29       Impact factor: 3.649

4.  Unveiling Adatoms in On-Surface Reactions: Combining Scanning Probe Microscopy with van't Hoff Plots.

Authors:  Juan Carlos Moreno-López; Alejandro Pérez Paz; Stefano Gottardi; Leonid Solianyk; Jun Li; Leticia Monjas; Anna K H Hirsch; Duncan John Mowbray; Meike Stöhr
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2021-04-30       Impact factor: 4.126

  4 in total

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