Literature DB >> 2308820

Splicing of a C. elegans myosin pre-mRNA in a human nuclear extract.

S C Ogg1, P Anderson, M P Wickens.   

Abstract

Splicing of mammalian introns requires that the intron possess at least 80 nucleotides. This length requirement presumably reflects the constraints of accommodating multiple snRNPs simultaneously in the same intron. In the free-living nematode, C. elegans, introns typically are 45 to 55 nucleotides in length. In this report, we determine whether C. elegans introns can obviate the mammalian length requirement by virtue of their structure or sequence. We demonstrate that a 53 nucleotide intron from the unc-54 gene of C. elegans does not undergo splicing in a mammalian (HeLa) nuclear extract. However, insertion of 31 nucleotides of foreign, prokaryotic sequence into the same intron results in efficient splicing. The observed splicing proceeds by the same two-step mechanism observed with mammalian introns, and exploits the same 3' and 5' splice sites as are used in C. elegans. The branch point used lies in the inserted sequence. We conclude that C. elegans splicing components are either fewer in number or smaller than their mammalian counterparts.

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Year:  1990        PMID: 2308820      PMCID: PMC330214          DOI: 10.1093/nar/18.1.143

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  21 in total

Review 1.  Cis and trans mRNA splicing in C. elegans.

Authors:  T Blumenthal; J Thomas
Journal:  Trends Genet       Date:  1988-11       Impact factor: 11.639

2.  Direct chemical method for sequencing RNA.

Authors:  D A Peattie
Journal:  Proc Natl Acad Sci U S A       Date:  1979-04       Impact factor: 11.205

3.  Alternative splicing of SV40 early pre-mRNA is determined by branch site selection.

Authors:  J C Noble; C Prives; J L Manley
Journal:  Genes Dev       Date:  1988-11       Impact factor: 11.361

4.  Multiple cis-acting sequence elements are required for efficient splicing of simian virus 40 small-t antigen pre-mRNA.

Authors:  X Y Fu; J D Colgan; J L Manley
Journal:  Mol Cell Biol       Date:  1988-09       Impact factor: 4.272

5.  A minimal intron length but no specific internal sequence is required for splicing the large rabbit beta-globin intron.

Authors:  B Wieringa; E Hofer; C Weissmann
Journal:  Cell       Date:  1984-07       Impact factor: 41.582

6.  Messenger RNA splicing in vitro: an excised intervening sequence and a potential intermediate.

Authors:  P J Grabowski; R A Padgett; P A Sharp
Journal:  Cell       Date:  1984-06       Impact factor: 41.582

7.  Protein structural domains in the Caenorhabditis elegans unc-54 myosin heavy chain gene are not separated by introns.

Authors:  J Karn; S Brenner; L Barnett
Journal:  Proc Natl Acad Sci U S A       Date:  1983-07       Impact factor: 11.205

8.  Normal and mutant human beta-globin pre-mRNAs are faithfully and efficiently spliced in vitro.

Authors:  A R Krainer; T Maniatis; B Ruskin; M R Green
Journal:  Cell       Date:  1984-04       Impact factor: 41.582

9.  The C. elegans trans-spliced leader RNA is bound to Sm and has a trimethylguanosine cap.

Authors:  J D Thomas; R C Conrad; T Blumenthal
Journal:  Cell       Date:  1988-08-12       Impact factor: 41.582

10.  Analysis of mRNA 3' end formation by modification interference: the only modifications which prevent processing lie in AAUAAA and the poly(A) site.

Authors:  L Conway; M Wickens
Journal:  EMBO J       Date:  1987-12-20       Impact factor: 11.598

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  7 in total

1.  Splicing signals in Drosophila: intron size, information content, and consensus sequences.

Authors:  S M Mount; C Burks; G Hertz; G D Stormo; O White; C Fields
Journal:  Nucleic Acids Res       Date:  1992-08-25       Impact factor: 16.971

2.  Species-specific signals for the splicing of a short Drosophila intron in vitro.

Authors:  M Guo; P C Lo; S M Mount
Journal:  Mol Cell Biol       Date:  1993-02       Impact factor: 4.272

3.  Azorhizobium caulinodans respires with at least four terminal oxidases.

Authors:  C L Kitts; R A Ludwig
Journal:  J Bacteriol       Date:  1994-02       Impact factor: 3.490

4.  Functional analysis of a C. elegans trans-splice acceptor.

Authors:  R Conrad; R F Liou; T Blumenthal
Journal:  Nucleic Acids Res       Date:  1993-02-25       Impact factor: 16.971

5.  A phylogeny of caenorhabditis reveals frequent loss of introns during nematode evolution.

Authors:  Soochin Cho; Suk-Won Jin; Adam Cohen; Ronald E Ellis
Journal:  Genome Res       Date:  2004-07       Impact factor: 9.043

6.  Splicing in Caenorhabditis elegans does not require an AG at the 3' splice acceptor site.

Authors:  R V Aroian; A D Levy; M Koga; Y Ohshima; J M Kramer; P W Sternberg
Journal:  Mol Cell Biol       Date:  1993-01       Impact factor: 4.272

Review 7.  Alternative Splicing Regulation of Cancer-Related Pathways in Caenorhabditis elegans: An In Vivo Model System with a Powerful Reverse Genetics Toolbox.

Authors:  Sergio Barberán-Soler; James Matthew Ragle
Journal:  Int J Cell Biol       Date:  2013-08-28
  7 in total

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