Literature DB >> 23087111

The genome sequence of an isolate of Indian citrus ringspot virus infecting the sweet orange in India.

Prabha K1, V K Baranwal.   

Abstract

Whole-genome sequencing of an isolate of Mandarivirus infecting the sweet orange [Citrus sinensis (L) Blanco] in the western part of India (Pune) was done. The single-stranded positive-sense RNA genome of Indian citrus ringspot virus (ICRSV) Pune has 7,560 nucleotides (nt), excluding a poly(A) tail, comprised of 27.98% (2,115 nt) A, 32.12% (2,428 nt) C, 19.68% (1,488 nt) G, and 20.22% (1,529 nt) T residues. The genome, organized into six open reading frames (ORFs), shares 97.7% sequence identity with the complete genome of the ICRSV K1 isolate (AF406744.1) infecting the kinnow (Citrus reticulate Blanco, a hybrid between King and Willow mandarins) in north India. The ICRSV Pune genome formed a complex secondary structure with a large number of unpaired cytosine-rich regions, and recombination analysis highlighted potential recombination in the ICRSV genome.

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Year:  2012        PMID： 23087111      PMCID： PMC3486449          DOI： 10.1128/JVI.02084-12

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  6 in total

1.  Nucleotide sequence, genome organisation and phylogenetic analysis of Indian citrus ringspot virus. Brief report.

Authors:  G Rustici; R G Milne; G P Accotto
Journal:  Arch Virol       Date:  2002-11       Impact factor: 2.574

2.  Mutation of the GKS motif of the RNA-dependent RNA polymerase from potato virus X disables or eliminates virus replication.

Authors:  G F Davenport; D C Baulcombe
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3.  Putative RNA capping activities encoded by brome mosaic virus: methylation and covalent binding of guanylate by replicase protein 1a.

Authors:  T Ahola; P Ahlquist
Journal:  J Virol       Date:  1999-12       Impact factor: 5.103

4.  Secondary structure model of the coat protein gene of turnip yellow mosaic virus RNA: long, C-rich, single-stranded regions.

Authors:  K Hellendoorn; A W Mat; A P Gultyaev; C W Pleij
Journal:  Virology       Date:  1996-10-01       Impact factor: 3.616

5.  RDP3: a flexible and fast computer program for analyzing recombination.

Authors:  Darren P Martin; Philippe Lemey; Martin Lott; Vincent Moulton; David Posada; Pierre Lefeuvre
Journal:  Bioinformatics       Date:  2010-08-26       Impact factor: 6.937

6.  Viral AlkB proteins repair RNA damage by oxidative demethylation.

Authors:  Erwin van den Born; Marina V Omelchenko; Anders Bekkelund; Vibeke Leihne; Eugene V Koonin; Valerian V Dolja; Pål Ø Falnes
Journal:  Nucleic Acids Res       Date:  2008-08-21       Impact factor: 16.971
  6 in total
  2 in total

1.  Genome characterization of citrus yellow vein-clearing virus: limited heterogeneity of viral genomes in Mandarivirus-infecting different citrus species.

Authors:  Ram Prasnna Meena; K Prabha; V K Baranwal
Journal:  3 Biotech       Date:  2019-08-30       Impact factor: 2.406

2.  Characterization of a proposed dichorhavirus associated with the citrus leprosis disease and analysis of the host response.

Authors:  José Luis Cruz-Jaramillo; Roberto Ruiz-Medrano; Lourdes Rojas-Morales; José Abel López-Buenfil; Oscar Morales-Galván; Claudio Chavarín-Palacio; José Abrahán Ramírez-Pool; Beatriz Xoconostle-Cázares
Journal:  Viruses       Date:  2014-07-07       Impact factor: 5.048
  2 in total

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