Literature DB >> 23084856

Interrelationship between HIV-1 fitness and mutation rate.

Michael J Dapp1, Richard H Heineman, Louis M Mansky.   

Abstract

Differences in replication fidelity, as well as mutator and antimutator strains, suggest that virus mutation rates are heritable and prone to natural selection. Human immunodeficiency virus type 1 (HIV-1) has many distinct advantages for the study of mutation rate optimization given the wealth of structural and biochemical data on HIV-1 reverse transcriptase (RT) and mutants. In this study, we conducted parallel analyses of mutation rate and viral fitness. In particular, a panel of 10 RT mutants-most having drug resistance phenotypes-was analyzed for their effects on viral fidelity and fitness. Fidelity differences were measured using single-cycle vector assays, while fitness differences were identified using ex vivo head-to-head competition assays. As anticipated, virus mutants possessing either higher or lower fidelity had a corresponding loss in fitness. While the virus panel was not chosen randomly, it is interesting that it included more viruses possessing a mutator phenotype rather than viruses possessing an antimutator phenotype. These observations provide the first description of an interrelationship between HIV-1 fitness and mutation rate and support the conclusion that mutator and antimutator phenotypes correlate with reduced viral fitness. In addition, the findings here help support a model in which fidelity comes at a cost of replication kinetics and may help explain why retroviruses like HIV-1 and RNA viruses maintain replication fidelity near the extinction threshold.
Copyright © 2012 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23084856      PMCID: PMC3534800          DOI: 10.1016/j.jmb.2012.10.009

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  94 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Mechanistic basis for reduced viral and enzymatic fitness of HIV-1 reverse transcriptase containing both K65R and M184V mutations.

Authors:  Jérôme Deval; Kirsten L White; Michael D Miller; Neil T Parkin; Jérôme Courcambeck; Philippe Halfon; Boulbaba Selmi; Joëlle Boretto; Bruno Canard
Journal:  J Biol Chem       Date:  2003-10-09       Impact factor: 5.157

3.  Coupling ribose selection to fidelity of DNA synthesis. The role of Tyr-115 of human immunodeficiency virus type 1 reverse transcriptase.

Authors:  C E Cases-Gonzalez; M Gutierrez-Rivas; L Ménendez-Arias
Journal:  J Biol Chem       Date:  2000-06-30       Impact factor: 5.157

4.  Human immunodeficiency virus type 1 viral protein R (Vpr) arrests cells in the G2 phase of the cell cycle by inhibiting p34cdc2 activity.

Authors:  J He; S Choe; R Walker; P Di Marzio; D O Morgan; N R Landau
Journal:  J Virol       Date:  1995-11       Impact factor: 5.103

5.  A new reporter cell line to monitor HIV infection and drug susceptibility in vitro.

Authors:  A Gervaix; D West; L M Leoni; D D Richman; F Wong-Staal; J Corbeil
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-29       Impact factor: 11.205

6.  Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase.

Authors:  L M Mansky; H M Temin
Journal:  J Virol       Date:  1995-08       Impact factor: 5.103

7.  Heterogeneity of the mutation rates of influenza A viruses: isolation of mutator mutants.

Authors:  P Suárez; J Valcárcel; J Ortín
Journal:  J Virol       Date:  1992-04       Impact factor: 5.103

8.  Structure of a covalently trapped catalytic complex of HIV-1 reverse transcriptase: implications for drug resistance.

Authors:  H Huang; R Chopra; G L Verdine; S C Harrison
Journal:  Science       Date:  1998-11-27       Impact factor: 47.728

9.  Negative effects of chemical mutagenesis on the adaptive behavior of vesicular stomatitis virus.

Authors:  C H Lee; D L Gilbertson; I S Novella; R Huerta; E Domingo; J J Holland
Journal:  J Virol       Date:  1997-05       Impact factor: 5.103

10.  Therapeutically targeting RNA viruses via lethal mutagenesis.

Authors:  Jason D Graci; Craig E Cameron
Journal:  Future Virol       Date:  2008-11       Impact factor: 1.831

View more
  20 in total

Review 1.  The high cost of fidelity.

Authors:  Sarah B Lloyd; Stephen J Kent; Wendy R Winnall
Journal:  AIDS Res Hum Retroviruses       Date:  2014-01       Impact factor: 2.205

2.  Homology-Based Identification of a Mutation in the Coronavirus RNA-Dependent RNA Polymerase That Confers Resistance to Multiple Mutagens.

Authors:  Nicole R Sexton; Everett Clinton Smith; Hervé Blanc; Marco Vignuzzi; Olve B Peersen; Mark R Denison
Journal:  J Virol       Date:  2016-07-27       Impact factor: 5.103

3.  Constrained Mutational Sampling of Amino Acids in HIV-1 Protease Evolution.

Authors:  Jeffrey I Boucher; Troy W Whitfield; Ann Dauphin; Gily Nachum; Carl Hollins; Konstantin B Zeldovich; Ronald Swanstrom; Celia A Schiffer; Jeremy Luban; Daniel N A Bolon
Journal:  Mol Biol Evol       Date:  2019-04-01       Impact factor: 16.240

4.  High-Sequence Diversity and Rapid Virus Turnover Contribute to Higher Rates of Coreceptor Switching in Treatment-Experienced Subjects with HIV-1 Viremia.

Authors:  Rebecca Nedellec; Joshua T Herbeck; Peter W Hunt; Steven G Deeks; James I Mullins; Elizabeth D Anton; Jacqueline D Reeves; Donald E Mosier
Journal:  AIDS Res Hum Retroviruses       Date:  2016-10-12       Impact factor: 2.205

Review 5.  Quasispecies and virus.

Authors:  Esteban Domingo; Celia Perales
Journal:  Eur Biophys J       Date:  2018-02-03       Impact factor: 1.733

Review 6.  Intra-Host Diversity of Dengue Virus in Mosquito Vectors.

Authors:  Amanda Makha Bifani; Tanamas Siriphanitchakorn; Milly M Choy
Journal:  Front Cell Infect Microbiol       Date:  2022-06-22       Impact factor: 6.073

7.  High-Resolution Sequencing of Viral Populations during Early Simian Immunodeficiency Virus Infection Reveals Evolutionary Strategies for Rapid Escape from Emerging Env-Specific Antibody Responses.

Authors:  Sergio Ita; Alison K Hill; Evan C Lam; Fay J Dufort; Xiao Yang; Ruchi Newman; Sivan Leviyang; Ismael B Fofana; Welkin E Johnson
Journal:  J Virol       Date:  2018-03-14       Impact factor: 5.103

8.  Back to the future: revisiting HIV-1 lethal mutagenesis.

Authors:  Michael J Dapp; Steven E Patterson; Louis M Mansky
Journal:  Trends Microbiol       Date:  2012-11-27       Impact factor: 17.079

9.  A general method to eliminate laboratory induced recombinants during massive, parallel sequencing of cDNA library.

Authors:  Caryll Waugh; Deborah Cromer; Andrew Grimm; Abha Chopra; Simon Mallal; Miles Davenport; Johnson Mak
Journal:  Virol J       Date:  2015-04-09       Impact factor: 4.099

10.  Distinct Antiretroviral Mechanisms Elicited by a Viral Mutagen.

Authors:  Megan Roth; Yumeng Z McDaniel; Michele B Daly; Nathaniel Talledge; Willie M Greggs; Steven E Patterson; Baek Kim; Louis M Mansky
Journal:  J Mol Biol       Date:  2021-06-18       Impact factor: 6.151

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.