Literature DB >> 23070593

Modeling clinical outcome using multiple correlated functional biomarkers: A Bayesian approach.

Qi Long1, Xiaoxi Zhang2, Yize Zhao3, Brent A Johnson3, Roberd M Bostick4.   

Abstract

In some biomedical studies, biomarkers are measured repeatedly along some spatial structure or over time and are subject to measurement error. In these studies, it is often of interest to evaluate associations between a clinical endpoint and these biomarkers (also known as functional biomarkers). There are potentially two levels of correlation in such data, namely, between repeated measurements of a biomarker from the same subject and between multiple biomarkers from the same subject; none of the existing methods accounts for correlation between multiple functional biomarkers. We propose a Bayesian approach to model a clinical outcome of interest (e.g. risk for colorectal cancer) in the presence of multiple functional biomarkers while accounting for potential correlation. Our simulations show that the proposed approach achieves good performance in finite samples under various settings. In the presence of substantial or moderate correlation, the proposed approach outperforms an existing approach that does not account for correlation. The proposed approach is applied to a study of biomarkers of risk for colorectal neoplasms and our results show that the risk for colorectal cancer is associated with two functional biomarkers, APC and TGF-α, in particular, with their values in the region between the proliferating and differentiating zones of colorectal crypts.
© The Author(s) 2012.

Entities:  

Keywords:  Bayesian models; correlated data; functional biomarker; measurement error

Mesh:

Substances:

Year:  2012        PMID: 23070593      PMCID: PMC3548954          DOI: 10.1177/0962280212460444

Source DB:  PubMed          Journal:  Stat Methods Med Res        ISSN: 0962-2802            Impact factor:   3.021


  6 in total

1.  Testing for spatial correlation in nonstationary binary data, with application to aberrant crypt foci in colon carcinogenesis.

Authors:  Tatiyana V Apanasovich; Simon Sheather; Joanne R Lupton; Natasa Popovic; Nancy D Turner; Robert S Chapkin; Leslie A Braby; Raymond J Carroll
Journal:  Biometrics       Date:  2003-12       Impact factor: 2.571

2.  Bayesian hierarchical spatially correlated functional data analysis with application to colon carcinogenesis.

Authors:  Veerabhadran Baladandayuthapani; Bani K Mallick; Mee Young Hong; Joanne R Lupton; Nancy D Turner; Raymond J Carroll
Journal:  Biometrics       Date:  2007-06-30       Impact factor: 2.571

3.  Robust statistical methods for analysis of biomarkers measured with batch/experiment-specific errors.

Authors:  Qi Long; W Dana Flanders; Veronika Fedirko; Roberd M Bostick
Journal:  Stat Med       Date:  2010-02-10       Impact factor: 2.373

4.  Semiparametric estimation for joint modeling of colorectal cancer risk and functional biomarkers measured with errors.

Authors:  Qi Long; Xiaoxi Zhang; Roberd M Bostick
Journal:  Biom J       Date:  2011-03-15       Impact factor: 2.207

5.  Expansion of the epithelial cell proliferative compartment and frequency of adenomatous polyps in the colon correlate with the strength of family history of colorectal cancer.

Authors:  H Gerdes; J S Gillin; E Zimbalist; C Urmacher; M Lipkin; S J Winawer
Journal:  Cancer Res       Date:  1993-01-15       Impact factor: 12.701

6.  TGF-alpha expression as a potential biomarker of risk within the normal-appearing colorectal mucosa of patients with and without incident sporadic adenoma.

Authors:  Carrie R Daniel; Roberd M Bostick; William Dana Flanders; Qi Long; Veronika Fedirko; Eduard Sidelnikov; March E Seabrook
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2009-01       Impact factor: 4.254

  6 in total

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