Literature DB >> 23070591

Classification using longitudinal trajectory of biomarker in the presence of detection limits.

Yeonhee Kim1, Lan Kong2.   

Abstract

Discriminant analysis is commonly used to evaluate the ability of candidate biomarkers to separate patients into pre-defined groups. Recent extension of discriminant analysis to longitudinal data enables us to improve the classification accuracy based on biomarker profiles rather than on a single biomarker measurement. However, the biomarker measurement is often limited by the sensitivity of the given assay, resulting in data that are censored at either the lower or the upper limit of detection. Inappropriate handling of censored data may affect the classification accuracy of biomarker and hinder the evaluation of its potential discrimination power. We develop a discriminant analysis method for censored longitudinal biomarker data based on mixed models and evaluate its performance by area under the receiver operation characteristic curve. Through the simulation study, we show that our method is better than the simple substitution methods in terms of parameter estimation and evaluating biomarker performance. Application to a biomarker study of patients with acute kidney injury demonstrates that our method may shed light on the potential clinical utility of biomarkers by taking into account both longitudinal trajectory and limit of detection issues.
© The Author(s) 2012.

Entities:  

Keywords:  AUC; censored biomarker; discriminant analysis; limit of detection; longitudinal

Mesh:

Substances:

Year:  2012        PMID: 23070591     DOI: 10.1177/0962280212460438

Source DB:  PubMed          Journal:  Stat Methods Med Res        ISSN: 0962-2802            Impact factor:   3.021


  4 in total

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Journal:  Cancer Prev Res (Phila)       Date:  2019-04-09

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Authors:  Riham El Saeiti; Marta García-Fiñana; David M Hughes
Journal:  Int J Biostat       Date:  2021-03-26       Impact factor: 1.829

3.  The Statistical Value of Raw Fluorescence Signal in Luminex xMAP Based Multiplex Immunoassays.

Authors:  Edmond J Breen; Woei Tan; Alamgir Khan
Journal:  Sci Rep       Date:  2016-05-31       Impact factor: 4.379

4.  Dynamic longitudinal discriminant analysis using multiple longitudinal markers of different types.

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Journal:  Stat Methods Med Res       Date:  2016-10-26       Impact factor: 3.021

  4 in total

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