Literature DB >> 23065410

How did metabolism and genetic replication get married?

Vic Norris1, Corinne Loutelier-Bourhis, Alain Thierry.   

Abstract

In addressing the question of the origins of the relationship between metabolism and genetic replication, we consider the implications of a prebiotic, fission-fusion, ecology of composomes. We emphasise the importance of structures and non-specific catalysis on interfaces created by structures. From the assumption that the bells of the metabolism-replication wedding still echo in modern cells, we argue that the functional assemblies of macromolecules that constitute hyperstructures in modern bacteria are the descendants of composomes and that interactions at the hyperstructure level control the cell cycle. A better understanding of the cell cycle should help understand the original metabolism-replication marriage. This understanding requires new concepts such as metabolic signalling, metabolic sensing and Dualism, which entails the cells in a population varying the ratios of equilibrium to non-equilibrium hyperstructures so as to maximise the chances of both survival and growth. A deeper understanding of the coupling between metabolism and replication may also require a new view of cell cycle functions in creating a coherent diversity of phenotypes and in narrowing the combinatorial catalytic space. To take these ideas into account, we propose the Accordion model in which a dynamic interface between lipid domains catalysed monomer to polymer reactions and became decorated with peptides and nucleotides that favoured their own catalysis. In this model, metabolism, replication, differentiation and division all began together at the interface between extended equilibrium structures within protocells or composomes.

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Year:  2012        PMID: 23065410     DOI: 10.1007/s11084-012-9312-3

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  38 in total

Review 1.  Stress and the single cell: intrapopulation diversity is a mechanism to ensure survival upon exposure to stress.

Authors:  Ian R Booth
Journal:  Int J Food Microbiol       Date:  2002-09-15       Impact factor: 5.277

2.  Bacterial persistence as a phenotypic switch.

Authors:  Nathalie Q Balaban; Jack Merrin; Remy Chait; Lukasz Kowalik; Stanislas Leibler
Journal:  Science       Date:  2004-08-12       Impact factor: 47.728

3.  Regulation of phenotypic variability by a threshold-based mechanism underlies bacterial persistence.

Authors:  Eitan Rotem; Adiel Loinger; Irine Ronin; Irit Levin-Reisman; Chana Gabay; Noam Shoresh; Ofer Biham; Nathalie Q Balaban
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-28       Impact factor: 11.205

Review 4.  Phenotypic variation in bacteria: the role of feedback regulation.

Authors:  Wiep Klaas Smits; Oscar P Kuipers; Jan-Willem Veening
Journal:  Nat Rev Microbiol       Date:  2006-04       Impact factor: 60.633

5.  Compositional complementarity and prebiotic ecology in the origin of life.

Authors:  Axel Hunding; Francois Kepes; Doron Lancet; Abraham Minsky; Vic Norris; Derek Raine; K Sriram; Robert Root-Bernstein
Journal:  Bioessays       Date:  2006-04       Impact factor: 4.345

6.  Life without a wall or division machine in Bacillus subtilis.

Authors:  M Leaver; P Domínguez-Cuevas; J M Coxhead; R A Daniel; J Errington
Journal:  Nature       Date:  2009-02-12       Impact factor: 49.962

7.  Phenotypic heterogeneity can enhance rare-cell survival in 'stress-sensitive' yeast populations.

Authors:  Amy L Bishop; Faiza A Rab; Edward R Sumner; Simon V Avery
Journal:  Mol Microbiol       Date:  2006-12-14       Impact factor: 3.501

8.  Membrane nanotubes induced by aqueous phase separation and stabilized by spontaneous curvature.

Authors:  Yanhong Li; Reinhard Lipowsky; Rumiana Dimova
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-07       Impact factor: 11.205

9.  A hypothesis to explain division site selection in Escherichia coli by combining nucleoid occlusion and Min.

Authors:  Vic Norris; Conrad Woldringh; Eugenia Mileykovskaya
Journal:  FEBS Lett       Date:  2004-03-12       Impact factor: 4.124

10.  The stringent response and cell cycle arrest in Escherichia coli.

Authors:  Daniel J Ferullo; Susan T Lovett
Journal:  PLoS Genet       Date:  2008-12-12       Impact factor: 5.917

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  4 in total

1.  New approaches to the problem of generating coherent, reproducible phenotypes.

Authors:  Vic Norris; Ghislain Gangwe Nana; Jean-Nicolas Audinot
Journal:  Theory Biosci       Date:  2013-06-21       Impact factor: 1.919

2.  What properties of life are universal? Substance-free, scale-free life.

Authors:  Vic Norris
Journal:  Orig Life Evol Biosph       Date:  2015-03-22       Impact factor: 1.950

Review 3.  Looked at life from both sides now.

Authors:  Jillian E Smith; Allisandra K Mowles; Anil K Mehta; David G Lynn
Journal:  Life (Basel)       Date:  2014-12-11

4.  Footprints of a Singular 22-Nucleotide RNA Ring at the Origin of Life.

Authors:  Jacques Demongeot; Alexandra Henrion-Caude
Journal:  Biology (Basel)       Date:  2020-04-25
  4 in total

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